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2011
Alagador, D., M. J. Martins, J. O. Cerdeira, M. Cabeza, and M. B. Araújo. "A probability-based approach to match species with reserves when data are at different resolutions." Biological Conservation. 144 (2011): 811-820. Abstract
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Sousa, A. M. R., J. Xavier, J. J. L. Morais, V. M. J. Filipe, and M. Vaz. "Processing discontinuous displacement fields by a spatio-temporal derivative technique." Optics and Lasers in Engineering. 49 (2011): 1402-1412. Abstract
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Santos, J. P., M. C. Martins, A. M. Costa, J. P. Marques, P. Indelicato, and F. Parente. "Production and decay of chlorine ion excited species in an electron cyclotron resonance ion source plasma." Physica Scripta. T144 (2011): 014005. AbstractWebsite

The most important processes for the creation of chlorine ion excited states from the ground configurations of Cl 10+ to Cl 15+ ions in an electron cyclotron resonance ion source, leading to the emission of K x-ray lines, were studied. Theoretical values for inner-shell excitation and ionization cross-sections, including double KL and triple KLL ionization, transition probabilities and energies for the de-excitation processes, were calculated in the framework of the multi-configuration Dirac–Fock method. With reasonable assumptions about the electron energy distribution, a theoretical Kα x-ray spectrum was obtained, which was then compared with recent experimental data.

Santos, J. P., M. C. Martins, A. M. Costa, J. P. Marques, P. Indelicato, and F. Parente. "Production and decay of chlorine ion excited species in an electron cyclotron resonance ion source plasma." Physica Scripta. T144 (2011): 014005. AbstractWebsite

The most important processes for the creation of chlorine ion excited states from the ground configurations of Cl 10+ to Cl 15+ ions in an electron cyclotron resonance ion source, leading to the emission of K x-ray lines, were studied. Theoretical values for inner-shell excitation and ionization cross-sections, including double KL and triple KLL ionization, transition probabilities and energies for the de-excitation processes, were calculated in the framework of the multi-configuration Dirac–Fock method. With reasonable assumptions about the electron energy distribution, a theoretical Kα x-ray spectrum was obtained, which was then compared with recent experimental data.

Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Pereira, Vasco, Jorge Sá Silva, Alberto Cardoso, P. Gil, P. Furtado, R. M. Silva, J. Cecílio, A. Santos, A. Gomes, Edmundo Monteiro, J. d O, and R. Eiras. "Redes de Sensores sem Fios com Desempenho Controlado – Projecto FP7 GINSENG." Ingenium (Revista da Ordem dos Engenheiros) (2011): n/a. Abstract
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Santos, J., A. Costa, C. Madruga, F. Parente, and P. Indelicato. "Relativistic transition wavelenghts and probabilities for spectral lines of Ne II." The European Physical Journal D - Atomic, Molecular, Optical and Plasma Physics. 63 (2011): 89-96. AbstractWebsite

Transition wavelengths and probabilities for several 2 p 4 3 p -2 p 4 3 s and 2 p 4 3 d -2 p 4 3 p lines in fluorine-like neon ion (NeII) have been calculated within the multiconfiguration Dirac-Fock (MCDF) method with quantum electrodynamics (QED) corrections. The results are compared with all existing experimental and theoretical data.

Santos, J. P., A. Costa, C. Madruga, F. Parente, and P. Indelicato. "Relativistic transition wavelenghts and probabilities for spectral lines of Ne II." The European Physical Journal D. 63 (2011): 89-96. AbstractWebsite

Transition wavelengths and probabilities for several 2 p 4 3 p -2 p 4 3 s and 2 p 4 3 d -2 p 4 3 p lines in fluorine-like neon ion (NeII) have been calculated within the multiconfiguration Dirac-Fock (MCDF) method with quantum electrodynamics (QED) corrections. The results are compared with all existing experimental and theoretical data.

Lai, Livia, Janene Bumstead, Yan Liu, James Garnett, Maria A. Campanero-Rhodes, Damer P. Blake, Angelina S. Palma, Wengang Chai, David J. P. Ferguson, Peter Simpson, Ten Feizi, Fiona M. Tomley, and Stephen Matthews. "The Role of Sialyl Glycan Recognition in Host Tissue Tropism of the Avian Parasite Eimeria tenella." Plos Pathogens. 7 (2011). Abstract
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Queirós, Alexandra, Pedro Conde, Vera Cunha, Paula Ambrósio, Filipe J. Marques, and Fátima Serrano. "Sexuality in the third trimester of pregnancy." Revista Portuguesa de Cl{\'ınica Geral. 27 (2011): 434-443. Abstract
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Águas, Hugo, Sanjay K. Ram, Andreia Araújo, Diana Gaspar, António Vicente, Sergej A. Filonovich, Elvira Fortunato, Rodrigo Martins, and Isabel Ferreira. "Silicon thin film solar cells on commercial tiles." Energy & Environmental Science. 4.11 (2011): 4620-4632. Abstract
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Águas, Hugo, Sanjay K. Ram, Andreia Araújo, Diana Gaspar, António Vicente, Sergej A. Filonovich, Elvira Fortunato, Rodrigo Martins, and Isabel Ferreira. "Silicon thin film solar cells on commercial tiles." Energy & Environmental Science. 4 (2011): 4620-4632. Abstract
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Ferreira, Isabel, Bruno Brás, José Inácio Martins, Nuno Correia, Pedro Barquinha, Elvira Fortunato, and Rodrigo Martins. "Solid-state paper batteries for controlling paper transistors." Electrochimica Acta. 56.3 (2011): 1099-1105. Abstract
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Hollander, Yoav, Alan Hu, João Louren{\c c}o, and Ronny Morad. "Special Session on Debugging." Hardware and Software: Verification and Testing. Eds. Sharon Barner, Ian Harris, Daniel Kroening, and Orna Raz. Vol. 6504. Lecture Notes in Computer Science, 6504. Springer Berlin / Heidelberg, 2011. 24-28. Abstract
In software, hardware, and embedded system domains, debugging is the process of locating and correcting faults in a system. Depending on the context, the various characteristics of debugging induce different challenges and solutions. Post-silicon hardware debugging, for example, needs to address issues such as limited visibility and controllability, while debugging software entails other issues, such as the handling of distributed or non-deterministic computation. The challenges that accompany such issues are the focus of many current research efforts. Solutions for debugging range from interactive tools to highly analytic techniques. We have seen great advances in debugging technologies in recent years, but bugs continue to occur, and debugging still encompasses significant portions of the life-cycles of many systems. The session covered state-of-the-art approaches as well as promising new research directions in both the hardware and software domains.
Watson, A. A., A. A. Lebedev, B. A. Hall, A. E. Fenton-May, A. A. Vagin, W. Dejnirattisai, J. Felce, J. Mongkolsapaya, A. S. Palma, Y. Liu, T. Feizi, G. R. Screaton, G. N. Murshudov, and C. A. O'Callaghan. "Structural flexibility and ligand-binding characteristics of the macrophage dengue virus receptor CLEC5A." Immunology. 135 (2011): 101. Abstract
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Watson, Aleksandra A., Andrey A. Lebedev, Benjamin A. Hall, Angharad E. Fenton-May, Alexei A. Vagin, Wanwisa Dejnirattisai, James Felce, Juthathip Mongkolsapaya, Angelina S. Palma, Yan Liu, Ten Feizi, Gavin R. Screaton, Garib N. Murshudov, and Christopher A. O'Callaghan. "Structural Flexibility of the Macrophage Dengue Virus Receptor CLEC5A IMPLICATIONS FOR LIGAND BINDING AND SIGNALING." Journal of Biological Chemistry. 286 (2011): 24208-24218. Abstract
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Barbosa, Paulo E. S., João Paulo Barros, Franklin Ramalho, Lu{\'ı}s Gomes, Jorge Figueiredo, Filipe Moutinho, Anikó Costa, and André Aranha. "SysVeritas: {A} Framework for Verifying {IOPT} Nets and Execution Semantics within Embedded Systems Design." Technological Innovation for Sustainability - Second {IFIP} {WG} 5.5/SOCOLNET Doctoral Conference on Computing, Electrical and Industrial Systems, DoCEIS 2011, Costa de Caparica, Portugal, February 21-23, 2011. Proceedings. 2011. 256-265. Abstract
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Baptista, AC, JI Martins, E. Fortunato, R. Martins, J. P. Borges, and I. Ferreira. "Thin and flexible bio-batteries made of electrospun cellulose-based membranes." Biosensors and Bioelectronics. 26.5 (2011): 2742-2745. Abstract
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Santos-Silva, T., A. Mukhopadhyay, J. D. Seixas, G. J. L. Bernardes, C. C. Romão, and MJ Romão. "Towards improved therapeutic CORMs: Understanding the reactivity of CORM-3 with proteins." Current Medicinal Chemistry. 18 (2011): 3361-3366. Abstract
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Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, P. Inacio, and J. N. Marat-Mendes. "The use of the final thermally stimulated discharge current technique to study the molecular movements around glass transition." Journal of Non-Crystalline Solids. 357 (2011): 385-390. Abstract
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ER, Neagu, Dias CJ, Lança MC, Igreja R, Inacio P, and Marat-Mendes J. N. "The use of the final thermally stimulated discharge current technique to study the molecular movements around glass transition." 354.2 (2011). Abstract

During electric polarization charge is injected into the material. The structure is decorated with space charge and during the subsequent heating an apparent peak and the genuine peaks that are related to dipole randomization and charge detrapping are observed. The method is used here to analyze the molecular movements in polyimide in the temperature range from 293 to 623K. Two weak relaxations have been observed around 337K and around 402K. The electrical conductivity changes with temperature in agreement with the Arrhenius law only below (W=(0.84±0.03) eV ) and above ( W=(0.82±0.03) eV) the temperature range where the β relaxation is observed. The variation of the electrical conductivity with temperature, in the range of the β relaxation, is controlled by the variation of the charge currier mobility with temperature and it shows a non-Arrhenius behavior. We suggest that the β1 sub-glass relaxation is related to the rotation or oscillation of phenyl groups and the β2 sub-glass relaxation is related to the rotation or oscillation of the imidic ring. At higher temperatures an apparent peak was observed. The relaxation time of the trapped charge, at 573K, is high than 8895s.

Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, P. Inacio, and J. N. Marat-Mendes. "The use of the final thermally stimulated discharge current technique to study the molecular movements around glass transition." Journal of Non-Crystalline Solids. 357 (2011): 385-390. AbstractWebsite

During electric polarization charge is injected into the material. The structure is decorated with space charge and during the subsequent heating an apparent peak and the genuine peaks that are related to dipole randomization and charge detrapping are observed. The method is used here to analyze the molecular movements in polyimide in the temperature range from 293 to 623 K. Two weak relaxations have been observed around 337 K and around 402 K. The electrical conductivity changes with temperature in agreement with the Arrhenius law only below (W= (0.84 +/- 0.03) eV) and above ( W (0.82 +/- 0.03) eV) the temperature range where the beta relaxation is observed. The variation of the electrical conductivity with temperature, in the range of the beta relaxation, is controlled by the variation of the charge currier mobility with temperature and it shows a non-Arrhenius behavior. We suggest that the beta(1) sub-glass relaxation is related to the rotation or oscillation of phenyl groups and the beta(2) sub-glass relaxation is related to the rotation or oscillation of the imidic ring. At higher temperatures an apparent peak was observed. The relaxation time of the trapped charge, at 573 K, is high than 8895 s. (C) 2010 Elsevier B.V. All rights reserved.

Neagu, E. R., C. J. Dias, M. C. Lanca, R. Igreja, P. Inacio, and J. N. Marat-Mendes. "The use of the final thermally stimulated discharge current technique to study the molecular movements around glass transition." Journal of Non-Crystalline Solids. 357 (2011): 385-390. Abstract
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Silva, Simone S., Ana Rita C. Duarte, Ana Paula Carvalho, João F. Mano, and Rui L. Reis. "{Green processing of porous chitin structures for biomedical applications combining ionic liquids and supercritical fluid technology}." Acta Biomaterialia. 7 (2011): 1166-1172. Abstract

The application of green chemistry principles in the processing of materials for advanced technologies is a steadily increasing field of research. In this work porous chitin-based materials were developed by combining the processing of chitin using ionic liquids (ILs) as a green solvent together with the use of supercritical fluid technology (SCF) as clean technology. Chitin was dissolved in 1-butyl-3-imidazolium acetate, followed by regeneration of the polymer in ethanol in specific moulds. The IL was removed using Soxhlet extraction and successive steps of extraction with SCF using carbon dioxide/ethanol ratios of 50/50 and 70/30. The developed porous chitin-based structures (ChIL) can be classified as mesoporous materials, with very low density and high porosity. The cytotoxicity of ChIL extracts was investigated using L929 fibroblast-like cells, and the results demonstrated that the produced materials have extremely low cytotoxicity levels. Therefore, the findings suggest that the porous chitin structures may be potential candidates for a number of biomedical applications, including tissue engineering. © 2010 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.