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2011
Folgosa, F., C. M. Cordas, J. A. Santos, AS Pereira, JJG Moura, P. Tavares, and I. Moura. "New spectroscopic and electrochemical insights on a class I superoxide reductase: evidence for an intramolecular electron-transfer pathway." Biochemical Journal. 438 (2011): 485-494. AbstractWebsite

SORs (superoxide reductases) are enzymes involved in bacterial resistance to reactive oxygen species, catalysing the reduction of superoxide anions to hydrogen peroxide. So far three structural classes have been identified. Class I enzymes have two ironcentre-containing domains. Most studies have focused on the catalytic iron site (centre II), yet the role of centre I is poorly understood. The possible roles of this iron site were approached by an integrated study using both classical and fast kinetic measurements, as well as direct electrochemistry. A new heterometallic form of the protein with a zinc-substituted centre I, maintaining the iron active-site centre II, was obtained, resulting in a stable derivative useful for comparison with the native all-iron from. Second-order rate constants for the electron transfer between reduced rubredoxin and the different SOR forms were determined to be 2.8 x 10(7) M(-1) . s(-1) and 1.3 x 10(6) M(-1) . s(-1) for SOR(Fe(IIII)-Fe(II)) and for SOR(Fe(IIII)-Fe(III)) forms respectively, and 3.2 x 10(6) M(-1) s(-1) for the SOR(Zn(II)-Fe(III)) form. The results obtained seem to indicate that centre I transfers electrons from the putative physiological donor rubredoxin to the catalytic active iron site (intramolecular process). In addition, electrochemical results show that conformational changes are associated with the redox state of centre I, which may enable a faster catalytic response towards superoxide anion. The apparent rate constants calculated for the SOR-mediated electron transfer also support this observation.

Domingues, T., J. R. Fernandes, and L. B. Oliveira. "Oscillator noise budget for ADC systems." Mixed Design of Integrated Circuits and Systems (MIXDES), 2011 Proceedings of the 18th International Conference. IEEE, 2011. 358-361. Abstract
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Moutinho, Filipe, Lu{\'ı}s Gomes, Paulo E. S. Barbosa, João Paulo Barros, Franklin Ramalho, Jorge Figueiredo, Anikó Costa, and André Monteiro. "Petri Net Based Specification and Verification of Globally-Asynchronous-Locally-Synchronous System." Technological Innovation for Sustainability - Second {IFIP} {WG} 5.5/SOCOLNET Doctoral Conference on Computing, Electrical and Industrial Systems, DoCEIS 2011, Costa de Caparica, Portugal, February 21-23, 2011. Proceedings. 2011. 237-245. Abstract
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Capodicasa, Cristina, Paola Chiani, Carla Bromuro, Flavia De Bernardis, Marcello Catellani, Angelina S. Palma, Yan Liu, Ten Feizi, Antonio Cassone, Eugenio Benvenuto, and Antonella Torosantucci. "Plant production of anti-beta-glucan antibodies for immunotherapy of fungal infections in humans." Plant Biotechnology Journal. 9 (2011): 776-787. Abstract
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Sousa, A. M. R., J. Xavier, J. J. L. Morais, V. M. J. Filipe, and M. Vaz. "Processing discontinuous displacement fields by a spatio-temporal derivative technique." Optics and Lasers in Engineering. 49 (2011): 1402-1412. Abstract
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Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Pereira, Vasco, Jorge Sá Silva, Alberto Cardoso, P. Gil, P. Furtado, R. M. Silva, J. Cecílio, A. Santos, A. Gomes, Edmundo Monteiro, J. d O, and R. Eiras. "Redes de Sensores sem Fios com Desempenho Controlado – Projecto FP7 GINSENG." Ingenium (Revista da Ordem dos Engenheiros) (2011): n/a. Abstract
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Filanovsky, I. M., and L. B. Oliveira. "Regenerative current amplifier using van der Pol approximation." Circuits and Systems (MWSCAS), 2011 IEEE 54th International Midwest Symposium on. IEEE, 2011. 1-4. Abstract
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Lai, Livia, Janene Bumstead, Yan Liu, James Garnett, Maria A. Campanero-Rhodes, Damer P. Blake, Angelina S. Palma, Wengang Chai, David J. P. Ferguson, Peter Simpson, Ten Feizi, Fiona M. Tomley, and Stephen Matthews. "The Role of Sialyl Glycan Recognition in Host Tissue Tropism of the Avian Parasite Eimeria tenella." Plos Pathogens. 7 (2011). Abstract
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Orestes Cerdeira, J., R. M. V. Figueiredo, A. Pereira, and C. Requejo. "Scheduling with sequence-dependent batch setup times: Planning tests for a pharmaceutic industry." International Journal of Mathematical Modelling and Numerical Optimisation. 2 (2011): 273-287. Abstract
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Silva, A., D. Cavalheiro, S. Abdollahvand, L. B. Oliveira, M. Figueiredo, and J. Goes. "A self-biased ring oscillator with quadrature outputs operating at 600 MHz in a 130 nm CMOS technology." Mixed Design of Integrated Circuits and Systems (MIXDES), 2011 Proceedings of the 18th International Conference. IEEE, 2011. 221-224. Abstract
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Águas, Hugo, Sanjay K. Ram, Andreia Araújo, Diana Gaspar, António Vicente, Sergej A. Filonovich, Elvira Fortunato, Rodrigo Martins, and Isabel Ferreira. "Silicon thin film solar cells on commercial tiles." Energy & Environmental Science. 4.11 (2011): 4620-4632. Abstract
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Águas, Hugo, Sanjay K. Ram, Andreia Araújo, Diana Gaspar, António Vicente, Sergej A. Filonovich, Elvira Fortunato, Rodrigo Martins, and Isabel Ferreira. "Silicon thin film solar cells on commercial tiles." Energy & Environmental Science. 4 (2011): 4620-4632. Abstract
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Ferreira, Isabel, Bruno Brás, José Inácio Martins, Nuno Correia, Pedro Barquinha, Elvira Fortunato, and Rodrigo Martins. "Solid-state paper batteries for controlling paper transistors." Electrochimica Acta. 56.3 (2011): 1099-1105. Abstract
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Ferreira, I.a, Brás Martins Correia Barquinha Fortunato Martins B. a J. I. "Solid-state paper batteries for controlling paper transistors." Electrochimica Acta. 56 (2011): 1099-1105. AbstractWebsite

A commercial sheet of paper based on natural cellulose fibers acting as permeable membrane with thin film metal cathode (Cu) and anode (Al) layers in each face was used to produce paper batteries that could be interconnected in series and rechargeable using water as electrolyte. Their electrical characteristics and the set of electrochemical reactions that support the experimental behavior observed are described in this paper. A series of integrated batteries able to supply a voltage of about 3 V and a current ranging from 0.7 μA to 25 μA in cells with sizes of 1.2 cm × 3.0 cm for a relative humidity in the range of 50-65% were produced in a single sheet of paper, and successfully applied to control the ON/OFF gate state of paper transistors. © 2010 Elsevier Ltd. All rights reserved.

Watson, A. A., A. A. Lebedev, B. A. Hall, A. E. Fenton-May, A. A. Vagin, W. Dejnirattisai, J. Felce, J. Mongkolsapaya, A. S. Palma, Y. Liu, T. Feizi, G. R. Screaton, G. N. Murshudov, and C. A. O'Callaghan. "Structural flexibility and ligand-binding characteristics of the macrophage dengue virus receptor CLEC5A." Immunology. 135 (2011): 101. Abstract
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Watson, Aleksandra A., Andrey A. Lebedev, Benjamin A. Hall, Angharad E. Fenton-May, Alexei A. Vagin, Wanwisa Dejnirattisai, James Felce, Juthathip Mongkolsapaya, Angelina S. Palma, Yan Liu, Ten Feizi, Gavin R. Screaton, Garib N. Murshudov, and Christopher A. O'Callaghan. "Structural Flexibility of the Macrophage Dengue Virus Receptor CLEC5A IMPLICATIONS FOR LIGAND BINDING AND SIGNALING." Journal of Biological Chemistry. 286 (2011): 24208-24218. Abstract
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Bras, Joana L. A., Alan Cartmell, Ana Lusia M. Carvalho, Genny Verze, Edward A. Bayer, Yael Vazana, Marcia A. S. Correia, Jose A. M. Prates, Supriya Ratnaparkhe, Alisdair B. Boraston, Maria J. Romao, Carlos M. G. A. Fontes, and Harry J. Gilbert. "Structural insights into a unique cellulase fold and mechanism of cellulose hydrolysis (vol 108, pg 5237, 2011)." Proceedings of the National Academy of Sciences of the United States of America. 108 (2011): 8525. Abstract
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Barbosa, Paulo E. S., João Paulo Barros, Franklin Ramalho, Lu{\'ı}s Gomes, Jorge Figueiredo, Filipe Moutinho, Anikó Costa, and André Aranha. "SysVeritas: {A} Framework for Verifying {IOPT} Nets and Execution Semantics within Embedded Systems Design." Technological Innovation for Sustainability - Second {IFIP} {WG} 5.5/SOCOLNET Doctoral Conference on Computing, Electrical and Industrial Systems, DoCEIS 2011, Costa de Caparica, Portugal, February 21-23, 2011. Proceedings. 2011. 256-265. Abstract
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Baptista, AC, JI Martins, E. Fortunato, R. Martins, J. P. Borges, and I. Ferreira. "Thin and flexible bio-batteries made of electrospun cellulose-based membranes." Biosensors and Bioelectronics. 26.5 (2011): 2742-2745. Abstract
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Surzhykov, A., P. Indelicato, J. P. Santos, P. Amaro, Th Stöhlker, and S. Fritzsche. "Two-photon absorption of few-electron heavy ions." Physical Review A. 84 (2011): 022511. AbstractWebsite

The two-photon absorption of few-electron ions has been studied by using second-order perturbation theory and Dirac's relativistic equation. Within this framework, the general expressions for the excitation cross sections and rates are derived including a full account of the higher-order multipole terms in the expansion of the electron-photon interaction. While these expressions can be applied to any ion, independent of its particular shell structure, detailed computations are carried out for the two-photon absorption of hydrogen-, helium-, and berylliumlike ions and are compared with the available theoretical and experimental data. The importance of relativistic and nondipole effects in the analysis and computation of induced two-photon transitions is pointed out. Moreover, we discuss the potential of these transitions for atomic parity-violation studies in the high-Z domain.

Surzhykov, A., P. Indelicato, J. P. Santos, P. Amaro, Th Stöhlker, and S. Fritzsche. "Two-photon absorption of few-electron heavy ions." Physical Review A. 84 (2011): 022511. AbstractWebsite

The two-photon absorption of few-electron ions has been studied by using second-order perturbation theory and Dirac's relativistic equation. Within this framework, the general expressions for the excitation cross sections and rates are derived including a full account of the higher-order multipole terms in the expansion of the electron-photon interaction. While these expressions can be applied to any ion, independent of its particular shell structure, detailed computations are carried out for the two-photon absorption of hydrogen-, helium-, and berylliumlike ions and are compared with the available theoretical and experimental data. The importance of relativistic and nondipole effects in the analysis and computation of induced two-photon transitions is pointed out. Moreover, we discuss the potential of these transitions for atomic parity-violation studies in the high-Z domain.

Fortunato, E., Martins R. "Where science fiction meets reality? With oxide semiconductors!" Physica Status Solidi - Rapid Research Letters. 5 (2011): 336-339. AbstractWebsite

Transparent electronics is today one of the most advanced topics for a wide range of device applications, where the key components are wide band gap semiconductors, where oxides of different origin play an important role, not only as passive components but also as active components similar to what we observe in conventional semiconductors. As passive components they include the use of these materials as dielectrics for a wide range of electronic devices and also as transparent electrical conductors for use in several optoelectronic applications, such as liquid crystal displays, organic light emitting diodes, solar cells, optical sensors etc. As active materials, they exploit the use of truly electronic semiconductors where the main emphasis is being put on transparent thin film transistors, light emitting diodes, lasers, ultraviolet sensors and integrated circuits among others. © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Poettner, W., L. Wolf, J. Cecílio, P. Furtado, R. M. Silva, Jorge Sá Silva, Alberto Cardoso, J. Brown, C. Sreenan, A. Klein, U. Roedig, V. Vassiliou, T. Voigt, T. O. Donovan, Z. He, Z. Zinonos, and P. Gil. "WSN Evaluation in Industrial Environments First results and lessons learned." DCOSS. n/a 2011. Abstract
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