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2016
Barros, A., S. Quraishi, M. Martins, P. Gurikov, R. Subrahmanyam, I. Smirnova, A. R. C. Duarte, and R. L. Reis. "{Hybrid Alginate-Based Cryogels for Life Science Applications}." Chemie-Ingenieur-Technik. 88 (2016). Abstract

© 2016 WILEY-VCH Verlag GmbH {&} Co. KGaA, Weinheim. This work presents a novel route toward porous scaffolds for tissue engineering and regenerative medicine (TERM) applications. Hybrid cryogels with gelatin, gellan gum, carboxymethylcellulose, and lignin were prepared by a two-step process. Textural properties of the cryogels were analyzed by SEM and micro-computed tomography. The results indicated that rapid freezing retained sample shape and yielded macroporous materials. The mechanical properties of the cryogels were characterized in compression mode. Cytotoxicity studies indicated that the hybrid-alginate cryogels did not present cytotoxicity and have the potential to be used in TERM.

Barros, A. A., I. M. Aroso, T. H. Silva, J. F. Mano, A. R. C. Duarte, and R. L. Reis. "{In vitro bioactivity studies of ceramic structures isolated from marine sponges}." Biomedical Materials (Bristol). 11 (2016). Abstract

© 2016 IOP Publishing Ltd. In this work, we focused on the potential of bioceramics from different marine sponges - namely Petrosia ficiformis, Agelas oroides and Chondrosia reniformis - for novel biomedical/industrial applications. The bioceramics from these sponges were obtained after calcination at 750 °C for 6 h in a furnace. The morphological characteristics were evaluated by scanning electron microscopy (SEM). The in vitro bioactivity of the bioceramics was evaluated in simulated body fluid (SBF) after 14 and 21 d. Observation of the bioceramics by SEM after immersion in SBF solution, coupled with spectroscopic elemental analysis (EDS), showed that the surface morphology was consistent with a calcium-phosphate (Ca/P) coating, similar to hydroxyapatite crystals (HA). Evaluation of the characteristic peaks of Ca/P crystals by Fourier transform infrared spectroscopy and x-ray diffraction further confirmed the existence of HA. Cytotoxicity studies were carried out with the different ceramics and these were compared with a commercially available Bioglass ® . In vitro tests demonstrated that marine bioceramics from these sponges are non-cytotoxic and have the potential to be used as substitutes for synthetic Bioglass ® .

Reifarth, R., et al. "{Nuclear astrophysics with radioactive ions at FAIR}." Vol. 665. Journal of Physics: Conference Series, 2016. 012044. Abstract
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2015
Johnston, E. M., S. Dell'acqua, S. R. Pauleta, I. Moura, and E. I. Solomon. "Protonation state of the Cu4S2 CuZ site in nitrous oxide reductase: redox dependence and insight into reactivity." Chem Sci. 6 (2015): 5670-5679. AbstractWebsite

Spectroscopic and computational methods have been used to determine the protonation state of the edge sulfur ligand in the Cu4S2 CuZ form of the active site of nitrous oxide reductase (N2OR) in its 3CuICuII (1-hole) and 2CuI2CuII (2-hole) redox states. The EPR, absorption, and MCD spectra of 1-hole CuZ indicate that the unpaired spin in this site is evenly delocalized over CuI, CuII, and CuIV. 1-hole CuZ is shown to have a mu2-thiolate edge ligand from the observation of S-H bending modes in the resonance Raman spectrum at 450 and 492 cm-1 that have significant deuterium isotope shifts (-137 cm-1) and are not perturbed up to pH 10. 2-hole CuZ is characterized with absorption and resonance Raman spectroscopies as having two Cu-S stretching vibrations that profile differently. DFT models of the 1-hole and 2-hole CuZ sites are correlated to these spectroscopic features to determine that 2-hole CuZ has a mu2-sulfide edge ligand at neutral pH. The slow two electron (+1 proton) reduction of N2O by 1-hole CuZ is discussed and the possibility of a reaction between 2-hole CuZ and O2 is considered.

Picado, Ana, Susana M. Paixao, Liliana Moita, Luis Silva, Mario S. Diniz, Joana Lourenco, Isabel Peres, Luisa Castro, Jose Brito Correia, Joana Pereira, Isabel Ferreira, Antnio Pedro Alves Matos, Pedro Barquinha, and Elsa Mendonca. "A multi-integrated approach on toxicity effects of engineered TiO2 nanoparticles." Frontiers of Environmental Science & Engineering. 9 (2015): 793-803. AbstractWebsite
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Diepold, Marc, Luis M. P. Fernandes, Jorge Machado, Pedro Amaro, Marwan Abdou-Ahmed, Fernando D. Amaro, Aldo Antognini, François Biraben, Tzu-Ling Chen, Daniel S. Covita, Andreas J. Dax, Beatrice Franke, Sandrine Galtier, Andrea L. Gouvea, Johannes Götzfried, Thomas Graf, Theodor W. Hänsch, Malte Hildebrandt, Paul Indelicato, Lucile Julien, Klaus Kirch, Andreas Knecht, Franz Kottmann, Julian J. Krauth, Yi-Wei Liu, Cristina M. B. Monteiro, Françoise Mulhauser, Boris Naar, Tobias Nebel, François Nez, Jose Paulo Santos, Joaquim M. F. dos Santos, Karsten Schuhmann, Csilla I. Szabo, David Taqqu, João F. C. A. Veloso, Andreas Voss, Birgit Weichelt, and Randolf Pohl. "Improved x-ray detection and particle identification with avalanche photodiodes." Review of Scientific Instruments. 86 (2015): 053102-7. AbstractWebsite
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Diepold, Marc, Luis M. P. Fernandes, Jorge Machado, Pedro Amaro, Marwan Abdou-Ahmed, Fernando D. Amaro, Aldo Antognini, Fran{\c c}ois Biraben, Tzu-Ling Chen, Daniel S. Covita, Andreas J. Dax, Beatrice Franke, Sandrine Galtier, Andrea L. Gouvea, Johannes Götzfried, Thomas Graf, Theodor W. Hänsch, Malte Hildebrandt, Paul Indelicato, Lucile Julien, Klaus Kirch, Andreas Knecht, Franz Kottmann, Julian J. Krauth, Yi-Wei Liu, Cristina M. B. Monteiro, Fran{\c c}oise Mulhauser, Boris Naar, Tobias Nebel, Fran{\c c}ois Nez, José Paulo Santos, Joaquim M. F. dos Santos, Karsten Schuhmann, Csilla I. Szabo, David Taqqu, João F. C. A. Veloso, Andreas Voss, Birgit Weichelt, and Randolf Pohl. "{Improved x-ray detection and particle identification with avalanche photodiodes}." Review of Scientific Instruments. 86 (2015): 053102. AbstractWebsite
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Bahubalindruni, Pydi Ganga, Vitor Grade Tavares, Pedro Barquinha, Candido Duarte, Nuno Cardoso, Pedro Guedes de Oliveira, Rodrigo Martins, and Elvira Fortunato. "a-GIZO TFT neural modeling, circuit simulation and validation." Solid-State Electronics. 105 (2015): 30-36. AbstractWebsite
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Ullaha, Sana, Fabio {De Matteis}, Rita Branquinho, Elvira Fortunato, Rodrigo Martins, and Ivan Davoli. "{A combination of solution synthesis {&} solution combustion synthesis for highly conducting and transparent Aluminum Zinc Oxide thin films}." 2015 IEEE 15th International Conference on Nanotechnology (IEEE-NANO). IEEE, 2015. 144-147. Abstract

Aluminum Zinc Oxide has been extensively investigated as a cheap alternative to transparent conducting tin oxide films for electronic and optoelectronic applications. Thin films of Aluminum Zinc Oxide have been developed successfully through a combination of solution combustion synthesis and solution synthesis. Zn(NO3)3·6H2O as metal source was dissolved in 2-methoxyethanol as solvent through combustion synthesis with Urea as fuel while dopant source of AlCl3·6H2O was mixed separately in solvent to avoid aluminum oxide formation in the films. Precursor solutions were obtained mixing Zn {&} Al separate solutions in 9:1, 8:2, and 7:3 ratios respectively with oxide, fuel and dopant concentrations of 0.5, 0.25, 0.1, and 0.05 M. The film stacks have been prepared through spin-coating with heating at 400°C for 10 minutes after each deposition to remove residuals and evaporate solvents. Thermal annealing in oven at 600°C for 1 hour followed by rapid thermal annealing at 500°C {&} 600°C first in vacuum and then in N2-5{%}H2 environment respectively for 10 minutes each reduced the resistivity of film stacks. Film stack with 10 layers for an average thickness of 0.5$μ$m gave the best Hall Effect resistivity of 3.2 × 10-2 $Ømega$-cm in the case of 0.5M solution with Zn:Al mixing ratio of 9:1 for RTA annealings at 600°C with an average total transparency of 80 {%} in the wavelength range of 400-1200 nm. The results show a clear trend that increasing the amount of ingredients resistivity could further be decreased.

Saponaro, A., C. Donadoni, S. R. Pauleta, F. Cantini, M. Matzapetakis, G. Thiel, L. Banci, B. Santoro, and A. Moroni. "HCN Channels: The Molecular Basis for their cAMP-TRIP8b Regulation." Biophysical Journal. Vol. 108. Biophys J, 108. 2015. 366a. Abstract
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Duarte, Susana, and Virgilio Cruz-Machado. "Investigating lean and green supply chain linkages through a balanced scorecard framework." International Journal of Management Science and Engineering Management. 10 (2015): 20-29. Abstract

This paper investigates how to evaluate lean and green supply chain performance through a traditional Balanced Scorecard (BSC). To attain the paper's objective, in a first stage a literature review was carried out to provide a comprehensive understanding of how lean and green can be compatible in a supply chain, how the performance should be evaluated, and how the BSC can evaluate the lean and green supply chain performance. Next, a conceptual framework was developed to investigate how lean and green initiatives can affect supply chain performance. A causal diagram was used to represent the relationships between each lean and green measure through the traditional four BSC perspectives: financial, customer, internal business process and learning and growth. It is possible to recognize that lean and green initiatives influence the linkages between performance measures. These linkages were established by anecdotal evidence derived from the literature review; they are an example of how to evaluate the organization's supply chain. The proposed diagram can be the basis for further research in lean and green supply chain performance. To the author's knowledge, this study is the first to attempt to understand how to apply BSCs to evaluate the integration of lean and green paradigms on supply chain performance.

Marques, A. C., L. Santos, M. N. Costa, J. M. Dantas, P. Duarte, A. Gonçalves, R. Martins, C. A. Salgueiro, and E. Fortunato. "{Office Paper Platform for Bioelectrochromic Detection of Electrochemically Active Bacteria using Tungsten Trioxide Nanoprobes}." Scientific Reports. 5 (2015): 9910. AbstractWebsite

Electrochemically active bacteria (EAB) have the capability to transfer electrons to cell exterior, a feature that is currently explored for important applications in bioremediation and biotechnology fields. However, the number of isolated and characterized EAB species is still very limited regarding their abundance in nature. Colorimetric detection has emerged recently as an attractive mean for fast identification and characterization of analytes based on the use of electrochromic materials. In this work, WO3 nanoparticles were synthesized by microwave assisted hydrothermal synthesis and used to impregnate non-treated regular office paper substrates. This allowed the production of a paper-based colorimetric sensor able to detect EAB in a simple, rapid, reliable, inexpensive and eco-friendly method. The developed platform was then tested with Geobacter sulfurreducens, as a proof of concept. G. sulfurreducens cells were detected at latent phase with an RGB ratio of 1.10 ± 0.04, and a response time of two hours.

Nunes, Daniela, Lidia Santos, Paulo Duarte, Ana Pimentel, Joana V. Pinto, Pedro Barquinha, Patricia A. Carvalho, Elvira Fortunato, and Rodrigo Martins. "Room Temperature Synthesis of Cu2O Nanospheres: Optical Properties and Thermal Behavior." Microscopy and Microanalysis. 21 (2015): 108-119. AbstractWebsite
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Benis, E. P., S. Doukas, T. J. M. Zouros, P. Indelicato, F. Parente, C. Martins, J. P. Santos, and J. P. Marques. "Evaluation of the effective solid angle of a hemispherical deflector analyser with injection lens for metastable Auger projectile states." Nuclear Inst. and Methods in Physics Research, B. 365 (2015): 457-461. AbstractWebsite

Nuclear Inst. and Methods in Physics Research, B, 365 (2015) 457-461. doi:10.1016/j.nimb.2015.07.006

Amaro, Pedro, Beatrice Franke, Julian J. Krauth, Marc Diepold, Filippo Fratini, Laleh Safari, Jorge Machado, Aldo Antognini, Franz Kottmann, Paul Indelicato, Randolf Pohl, and Jose Paulo Santos. "Quantum interference effects in laser spectroscopy of muonic hydrogen, deuterium, and helium-3." Physical Review A. 92 (2015): 022514-7. AbstractWebsite
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Guerra, M., J. M. Sampaio, T. I. Madeira, F. Parente, P. Indelicato, J. P. Marques, J. P. Santos, J. Hoszowska, Cl J. Dousse, L. Loperetti, F. Zeeshan, M. Muller, R. Unterumsberger, and B. Beckhoff. "Theoretical and experimental determination of L-shell decay rates, line widths, and fluorescence yields in Ge." Physical Review A. 92 (2015): 022507-9. AbstractWebsite
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Amaro, Pedro, Beatrice Franke, Julian J. Krauth, Marc Diepold, Filippo Fratini, Laleh Safari, Jorge Machado, Aldo Antognini, Franz Kottmann, Paul Indelicato, Randolf Pohl, and José Paulo Santos. "{Quantum interference effects in laser spectroscopy of muonic hydrogen, deuterium, and helium-3}." Physical Review A. 92 (2015): 022514. AbstractWebsite
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Ameller, David, Xavier Franch, Cristina Gómez, João Araújo, Richard Berntsson Svensson, Stefan Biffl, Jordi Cabot, Vittorio Cortellessa, Maya Daneva, Daniel Mendez Fernández, Ana Moreira, Henry Muccini, Antonio Vallecillo, Manuel Wimmer, Vasco Amaral, Hugo Brunelière, Loli Burgueño, Miguel Goulão, Bernhard Schätz, and Sabine Teufl. "Handling Non-Functional Requirements in Model-Driven Development: An Ongoing Industrial Survey." 23rd International Conference on Requirements Engineering (RE'15) - RE: Next! Ottawa, Canada: IEEE Computer Society, 2015.
Fliedel, C., V. Rosa, F. M. Alves, A. M. Martins, T. Avilés, and S. Dagorne. "P,O-Phosphinophenolate zinc(ii) species: Synthesis, structure and use in the ring-opening polymerization (ROP) of lactide, ε-caprolactone and trimethylene carbonate." Dalton Transactions. 44.27 (2015): 12376-12387. AbstractWebsite
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Kauf, T., V. Rosa, C. Fliedel, R. Pattacini, N. Deibel, T. Avilés, B. Sarkar, and P. Braunstein. "Reactivity of TCNE and TCNQ derivatives of quinonoid zwitterions with Cu(I)." Dalton Transactions. 44.12 (2015): 5441-5450. AbstractWebsite
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Nunes, D., L. Santos, P. Duarte, A. Pimentel, JV Pinto, P. Barquinha, P. A. Carvalho, E. Fortunato, and R. Martins. "Room Temperature Synthesis of Cu2O Nanospheres: Optical Properties and Thermal Behavior." Microscopy and Microanalysis. 21.01 (2015): 11. Abstract

The present work reports a simple and easy wet chemistry synthesis of cuprous oxide (Cu2O) nanospheres at room temperature without surfactants and using different precursors. Structural characterization was carried out by X-ray diffraction, transmission electron microscopy, and scanning electron microscopy coupled with focused ion beam and energy-dispersive X-ray spectroscopy. The optical band gaps were determined from diffuse reflectance spectroscopy. The photoluminescence behavior of the as-synthesized nanospheres showed significant differences depending on the precursors used. The Cu2O nanospheres were constituted by aggregates of nanocrystals, in which an on/off emission behavior of each individual nanocrystal was identified during transmission electron microscopy observations. The thermal behavior of the Cu2O nanospheres was investigated with in situ X-ray diffraction and differential scanning calorimetry experiments. Remarkable structural differences were observed for the nanospheres annealed in air, which turned into hollow spherical structures surrounded by outsized nanocrystals. FAU - Nunes, Daniela

Santos, T. C., A. R. De Oliveira, J. M. Dantas, C. A. Salgueiro, and C. M. Cordas. "Thermodynamic and kinetic characterization of PccH, a key protein in microbial electrosynthesis processes in Geobacter sulfurreducens." Biochimica et Biophysica Acta - Bioenergetics. 1847.10 (2015): 1113-1118. AbstractWebsite
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Xing, Lida, Martin G. Lockley, Daniel Marty, Jianping Zhang, Yan Wang, Hendrik Klein, Richard T. McCrea, Lisa G. Buckley, Matteo Belvedere, Octávio Mateus, Gerard D. Gierliński, Laura Piñuela, Scott W. Persons, IV, Fengping Wang, Hao Ran, Hui Dai, and Xianming Xie. "An Ornithopod-Dominated Tracksite from the Lower Cretaceous Jiaguan Formation (Barremian–Albian) of Qijiang, South-Central China: New Discoveries, Ichnotaxonomy, Preservation and Palaeoecology." PLoS ONE. 10 (2015): e0141059. Abstractlida_et_al_2015_an_ornithopod-dominated_tracksite_from_the.pdfWebsite

The historically-famous Lotus Fortress site, a deep 1.5–3.0-meter-high, 200-meter-long horizonal notch high up in near-vertical sandstone cliffs comprising the Cretaceous Jiaguan Formation, has been known since the 13th Century as an impregnable defensive position. The site is also extraordinary for having multiple tetrapod track-bearing levels, of which the lower two form the floor of part of the notch, and yield very well preserved asseamblages of ornithopod, bird (avian theropod) and pterosaur tracks. Trackway counts indicate that ornithopods dominate (69%) accounting for at least 165 trackmakers, followed by bird (18%), sauropod (10%), and pterosaur (3%). Previous studies designated Lotus Fortress as the type locality of Caririchnium lotus and Wupus agilis both of which are recognized here as valid ichnotaxa. On the basis of multiple parallel trackways both are interpreted as representing the trackways of gregarious species. C. lotus is redescribed here in detail and interpreted to indicate two age cohorts representing subadults that were sometimes bipedal and larger quadrupedal adults. Two other previously described dinosaurian ichnospecies, are here reinterpreted as underprints and considered nomina dubia. Like a growing number of significant tetrapod tracksites in China the Lotus Fortress site reveals new information about the composition of tetrapod faunas from formations in which the skeletal record is sparse. In particular, the site shows the relatively high abundance of Caririchium in a region where saurischian ichnofaunas are often dominant. It is also the only site known to have yielded Wupus agilis. In combination with information from other tracksites from the Jiaguan formation and other Cretaceous formations in the region, the track record is proving increasingly impotant as a major source of information on the vertebrate faunas of the region. The Lotus Fortress site has been developed as a spectacular, geologically-, paleontologically- and a culturally-significant destination within Qijiang National Geological Park.

Vale, Tiago, Ricardo J. Dias, João A. Silva, and João M. Lourenço. "Execução concorrente e determinista de transações." Proceedings of INForum Simpósio de Informática. INForum 2015. Covilhã, Portugal 2015. Abstractinforum15-pot.pdf

Neste artigo apresentamos um protocolo de controlo de concorrência que garante que a execução concorrente de transações é equivalente à sua execução sequencial por uma ordem predefinida. Isto permite executar programas que usam transações de forma determinista. O protocolo (1) permite, pela primeira vez, a execução determinista de programas que usam memória transacional por hardware; e (2) garante a execução determinista de programas que usam memória transacional por software com um desempenho claramente superior ao estado da arte.

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