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2015
Coelho, C., A. Foti, T. Hartmann, T. Santos-Silva, S. Leimkühler, and MJ Romão. "Structural insights into xenobiotic and inhibitor binding to human aldehyde oxidase." Nature Chemical Biology. 11 (2015): 779-783. Abstract
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Cukla, AR, R. S. Peres, J. Barata, RC Izquierdo, EA Perondi, and FJ Lorini. "A systematic approach to trajectory planning applied to modular robots." Mechatronics and its Applications (ISMA), 2015 10th International Symposium on. IEEE, 2015. 1-6. Abstract
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Conchinha, Cristina, João Vilhete Viegas D'Abreu, and J. C. Freitas. "Taller de formación robots y necesidades educativas especiales–{NEE}: {La} robótica educativa aplicada en contexto inclusivo." Ubicuo {Social}: {Aprendizage} con {TIC}. 2015. Abstract
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Soares, Paula I. P., Frederik Lochte, Coro Echeverria, Laura CJ Pereira, Joana T. Coutinho, Isabel M. M. Ferreira, Carlos M. M. Novo, and others. "Thermal and magnetic properties of iron oxide colloids: influence of surfactants." Nanotechnology. 26 (2015): 425704. Abstract
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Silva, Tiago A. N., A. Carvalho, Nuno M. M. Maia, and John E. Mottershead Uncertainty quantification by fuzzifying an experimental data set. ICEDyn2015 - International Conference on Structural Engineering Dynamics. Lagos, 2015. Abstract
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Palma, A. S., Y. Liu, H. Zhang, Y. Zhang, B. V. McCleary, G. Yu, Q. Huang, L. S. Guidolin, A. E. Ciocchini, A. Torosantucci, D. Wang, AL Carvalho, C. M. Fontes, B. Mulloy, R. A. Childs, T. Feizi, and W. Chai. "Unravelling glucan recognition systems by glycome microarrays using the designer approach and mass spectrometry." Mol Cell Proteomics (2015). AbstractWebsite

Glucans are polymers of D-glucose with differing linkages in linear or branched sequences. They are constituents of microbial and plant cell-walls and involved in important bio-recognition processes including immunomodulation, anti-cancer activities, pathogen virulence and plant cell-wall biodegradation. Translational possibilities for these activities in medicine and biotechnology are considerable. High-throughput micro-methods are needed to screen proteins for recognition of specific glucan sequences as a lead to structure-function studies and their exploitation. We describe construction of a glucome microarray, the first sequence-defined glycome-scale microarray, using a designer approach from targeted ligand-bearing glucans in conjunction with a novel high-sensitivity mass spectrometric sequencing method, as a screening tool to assign glucan recognition motifs. The glucome microarray comprises 153 oligosaccharide probes with high purity, representing major sequences in glucans. The negative-ion electrospray tandem mass spectrometry with collision-induced dissociation was used for complete linkage analysis of gluco-oligosaccharides in linear homo and hetero and branched sequences. The system is validated using antibodies and carbohydrate-binding modules known to target α- or β-glucans in different biological contexts, extending knowledge on their specificities, and applied to reveal new information on glucan recognition by two signalling molecules of the immune system against pathogens: Dectin-1 and DC-SIGN. The sequencing of the glucan oligosaccharides by the MS method and their interrogation on the microarrays provides detailed information on linkage, sequence and chain length requirements of glucan-recognizing proteins, and are a sensitive means of revealing unsuspected sequences in the polysaccharides.

Palma, Angelina S., Yan Liu, Hongtao Zhang, Yibing Zhang, Barry V. McCleary, Guangli Yu, Qilin Huang, Leticia S. Guidolin, Andres E. Ciocchini, Antonella Torosantucci, Denong Wang, Ana Luisa Carvalho, Carlos M. G. A. Fontes, Barbara Mulloy, Robert A. Childs, Ten Feizi, and Wengang Chai. "Unravelling Glucan Recognition Systems by Glycome Microarrays Using the Designer Approach and Mass Spectrometry." Molecular & Cellular Proteomics. 14 (2015): 974-988. Abstract
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Barbosa, A. R. a, A. a Lopes, R. a Monteiro, and F. b Castro. "Use of different inorganic solid wastes to produce glass foams." Wastes: Solutions, Treatments and Opportunities - Selected Papers from the 3rd Edition of the International Conference on Wastes: Solutions, Treatments and Opportunities, 2015. 2015. 25-30. Abstract

Cathode Ray Tube (CRT) waste glasses produced from dismantling TV sets were used to prepare glass foams by a simple and economic processing route, consisting of a direct sintering process of mixtures of CRT waste as glass powder with different foaming agents (coal fly ash and limestone quarrying residues). The influence of firing temperature, amount and type of foaming agent on the apparent density, pore size distribution and compressive strength have been studied. The aim of the work was to investigate the possibility to obtain glass foams using exclusively wastes as starting materials, and therefore replacing the conventional raw materials. © 2015 Taylor & Francis Group, London.

Clemmensen, Lars B., Jesper Milàn, Jan Schulz Adolfssen, Eliza Jarl Estrup, Nicolai Frobøse, Nicole Klein, Octávio Mateus, and Oliver Wings. "The vertebrate-bearing Late Triassic Fleming Fjord Formation of central East Greenland revisited: stratigraphy, palaeoclimate and new palaeontological data." Geological Society, London, Special Publications. 434 (2015). AbstractWebsite

In Late Triassic (Norian–Rhaetian) times, the Jameson Land Basin lay at 40° N on the northern part of the supercontinent Pangaea. This position placed the basin in a transition zone between the relatively dry interior of the supercontinent and its more humid periphery. Sedimentation in the Jameson Land Basin took place in a lake–mudflat system and was controlled by orbitally forced variations in precipitation. Vertebrate fossils have consistently been found in these lake deposits (Fleming Fjord Formation), and include fishes, dinosaurs, amphibians, turtles, aetosaurs and pterosaurs. Furthermore, the fauna includes mammaliaform teeth and skeletal material. New vertebrate fossils were found during a joint vertebrate palaeontological and sedimentological expedition to Jameson Land in 2012. These new finds include phytosaurs, a second stem testudinatan specimen and new material of sauropodomorph dinosaurs, including osteologically immature individuals. Phytosaurs are a group of predators common in the Late Triassic, but previously unreported from Greenland. The finding includes well-preserved partial skeletons that show the occurrence of four individuals of three size classes. The new finds support a late Norian–early Rhaetian age for the Fleming Fjord Formation, and add new information on the palaeogeographical and palaeolatitudinal distribution of Late Triassic faunal provinces.

Silva, Tiago A. N., and Maria A. R. Loja Virtual Testing of the Hygrothermal Residual Stresses in Functionally Graded Composites: Modelling and Optimization.. Eds. M. T. Restivo, A. Cardoso, and A. M. Lopes. Online Experimentation: Emergent Technologies and IoT. IFSA Publishing, 2015. Abstract
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Mendes, MJ, S. Morawiec, T. Mateus, A. Lyubchyk, H. Águas, I. Ferreira, E. Fortunato, R. Martins, F. Priolo, and I. Crupi. "{Broadband light trapping in thin film solar cells with self-organized plasmonic nanocolloids}." Nanotechnology. 26 (2015). Abstract

© 2015 IOP Publishing Ltd. The intense light scattered from metal nanoparticles sustaining surface plasmons makes them attractive for light trapping in photovoltaic applications. However, a strong resonant response from nanoparticle ensembles can only be obtained if the particles have monodisperse physical properties. Presently, the chemical synthesis of colloidal nanoparticles is the method that produces the highest monodispersion in geometry and material quality, with the added benefits of being low-temperature, low-cost, easily scalable and of allowing control of the surface coverage of the deposited particles. In this paper, novel plasmonic back-reflector structures were developed using spherical gold colloids with appropriate dimensions for pronounced far-field scattering. The plasmonic back reflectors are incorporated in the rear contact of thin film n-i-p nanocrystalline silicon solar cells to boost their photocurrent generation via optical path length enhancement inside the silicon layer. The quantum efficiency spectra of the devices revealed a remarkable broadband enhancement, resulting from both light scattering from the metal nanoparticles and improved light incoupling caused by the hemispherical corrugations at the cells' front surface formed from the deposition of material over the spherically shaped colloids.

Nunes, D., T. R. Calmeiro, S. Nandy, JV Pinto, A. Pimentel, P. Barquinha, P. A. Carvalho, J. C. Walmsley, E. Fortunato, and R. Martins. "{Charging effects and surface potential variations of Cu-based nanowires}." Thin Solid Films (2015): 1-9. AbstractWebsite

The presentwork reports charging effects and surface potential variations in pure copper, cuprous oxide and cu- pric oxide nanowires observed by electrostatic force microscopy (EFM) and Kelvin probe force microscopy (KPFM). The copper nanowires were produced by wet synthesis, oxidation into cuprous oxide nanowires was achieved throughmicrowave irradiation and cupric oxide nanowireswere obtained via furnace annealing in at- mospheric conditions. Structural characterization of the nanowireswas carried out byX-ray diffraction, scanning electron microscopy, transmission electron microscopy and energy dispersive X-ray spectroscopy. During the EFM experiments the electrostatic field of the positive probe charged negatively the Cu-based nanowires, which in turn polarized the SiO2 dielectric substrate. Both the probe/nanowire capacitance as well as the sub- strate polarization increased with the applied bias. Cu2O and CuO nanowires behaved distinctively during the EFMmeasurements in accordancewith their band gap energies. Thework functions(WF) of the Cu-based nano- wires, obtained by KPFM measurements, yieldedWFCuO N WFCu N WFCu2O

Aroso, I. M., R. Craveiro, Â. Rocha, M. Dionísio, S. Barreiros, R. L. Reis, A. Paiva, and A. R. C. Duarte. "{Design of controlled release systems for THEDES - Therapeutic deep eutectic solvents, using supercritical fluid technology}." International Journal of Pharmaceutics. 492 (2015). Abstract

© 2015 Elsevier B.V. Abstract Deep eutectic solvents (DES) can be formed by bioactive compounds or pharmaceutical ingredients. A therapeutic DES (THEDES) based on ibuprofen, a non-steroidal anti-inflammatory drug (NSAID), and menthol was synthesized and its thermal behavior was analyzed by differential scanning calorimetry (DSC). A controlled drug delivery system was developed by impregnating a starch:poly-Ï$μ$-caprolactone polymeric blend (SPCL 30:70) with the menthol:ibuprofen THEDES in different ratios (10 and 20 wt{%}), after supercritical fluid sintering at 20 MPa and 50 °C. The morphological characterization of SPCL matrices impregnated with THEDES was performed by scanning electron microscopy (SEM) and micro-computed tomography (micro-CT). Drug release studies were carried out in a phosphate buffered saline. The results obtained provide important clues for the development of carriers for the sustainable delivery of bioactive compounds.

Alexa, A., N. Tigau, P. Alexandru, A. Pimentel, R. Branquinho, D. Salgueiro, T. Calmeiro, R. Martins, E. Fortunato, and V. Musat. "{Morphological and optical characterization of transparent thin films obtained at low temperature using ZnO nanoparticles}." Journal of Optoelectronic and Advanced Materials. 17 (2015): 1288-1295. Abstract

Transparent metal oxides thin films are a class of inorganic conductors and semiconductors with significant importance for use in portable electronics, displays, flexible electronics, multi-functional windows and solar cells. Due to the recent development of transparent and flexible electronics, there is a growing interest in depositing metal-oxide thin-film on plastic substrates that can offer flexibility, lighter weight, and potentially lead to cheaper manufacturing by allowing printing and roll- to-roll processing. The plastic substrates, however, limit device processing to below 200oC. In this context, the deposition of high-performance semiconductor thin films from dispersions of pre-prepared oxide nanoparticles at temperatures below 200oC represents a potential key route. This paper reports on the preparation of ZnO transparent thin films using solution- processed nanoparticles (NPs) precipitated from zinc acetate alcoholic solution with potassium hydroxide. The nanoparticles size distribution, microstructure and crystallinity were measured by dynamic light scattering (DLS), Fourier transform infrared spectroscopy (FTIR) and X-ray diffraction (XRD). The thin films were deposited by spin-coating onto soda lima glass substrate, using a dispersion of 1wt{%} ZnO NPs. The morphology of the films annealed at 120 and 180oC, observed by atomic force microscopy and cross-section scanning electron microscopy, shows columnar grains with diameter ranging between 20 and 70 nm, depending on the conditions of depositions. Optical measurements indicated high transparency, between 85 and 94 {%}, in the visible range, a direct nature of band-to-band transitions and band gap values between 3,22 and 3,32 eV. The refractive index and extinction coefficient have been calculated from optical transmittance and reflectance spectra.

Conchinha, Cristina, João Vilhete Viegas D’Abreu, and João Correia de Freitas. "{PERCEPÇÃO} {DOS} {PROFESSORES} {PORTUGUESES} {SOBRE} {A} {ROBÓTICA} {EDUCATIVA} {APLICADA} À{S} {NECESSIDADES} {EDUCATIVAS} {ESPECIAIS}." Challenges 2015 (2015): 52. Abstract
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Nunes, D., A. Pimentel, JV Pinto, T. R. Calmeiro, S. Nandy, P. Barquinha, L. Pereira, P. A. Carvalho, E. Fortunato, and R. Martins. "{Photocatalytic behavior of TiO2 films synthesized by microwave irradiation}." Catalysis Today (2015). AbstractWebsite
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Schuster, Christian S., Seweryn Morawiec, Manuel J. Mendes, Maddalena Patrini, Emiliano R. Martins, Liam Lewis, Isodiana Crupi, and Thomas F. Krauss. "{Plasmonic and diffractive nanostructures for light trapping - an experimental comparison}." Optica. 2 (2015): 194-200. AbstractWebsite

Metal nanoparticles and diffractive nanostructures are widely studied for enhancing light trapping efficiency in thin-film solar cells. Both have achieved high performance enhancements, but there are very few direct comparisons between the two. Also, it is difficult to accurately determine the parasitic absorption of metal nanoparticles. Here, we assess the light trapping efficiencies of both approaches in an identical absorber configuration. We use a 240 nm thick amorphous silicon slab as the absorber layer and either a quasi-random supercell diffractive nanostructure or a layer of self-assembled metal nanoparticles for light trapping. Both the plasmonic and diffractive structures strongly enhance the absorption in the red/near-infrared regime. At longer wavelengths, however, parasitic absorption becomes evident in the metal nanoparticles, which reduces the overall performance of the plasmonic approach. We have formulated a simple analytical model to assess the parasitic absorption and effective reflectivity of a plasmonic reflector and to demonstrate good agreement with the experimental data.

2014
Santos, Jose Paulo, Maria Conceição Martins, Ana Maria Costa, José Pires Marques, Paul Indelicato, and Fernando Parente. "Theoretical determination of K X-ray transition energy and probability values for highly charged ions of lanthanum and cerium." The European Physical Journal D. 68 (2014): 244. AbstractWebsite
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Santos, Jose Paulo, Maria Conceição Martins, Ana Maria Costa, José Pires Marques, Paul Indelicato, and Fernando Parente. "Theoretical determination of K X-ray transition energy and probability values for highly charged ions of lanthanum and cerium." The European Physical Journal D. 68 (2014): 244. AbstractWebsite
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Guimarães, D., J. P. Santos, M. L. Carvalho, M. S. Diniz, B. House, and V. M. Miller. "Analytical evidence of heterogeneous lead accumulation in the hypothalamic defence area and nucleus tractus solitarius." NeuroToxicology. 44 (2014): 91-97. AbstractWebsite

Lead is a potent toxicant associated with adverse cardiovascular effects and hypertension in children. Yet, few studies have determined if autonomic dysfunction associated with lead exposure involves brain regions which regulate autonomic responses. Central autonomic nuclei such as the nucleus tractus solitarius (NTS) and hypothalamic defence area (HDA) may be particularly sensitive to lead infiltration because they are adjacent to ventricles and areas with semi-permeable blood-brain-barriers. To understand if autonomic nuclei are sensitive to lead accumulation Wistar rats were exposed to lead from the gestational period and lead levels were quantified in brain regions that regulate arterial pressure: the NTS and the HDA. Energy dispersive X-ray fluorescence (EDXRF) was used to quantify total brain lead levels and revealed no differences between exposed and control tissues; measured values were close to the detection limit (2μg/g). Electrothermal atomic absorption spectrometry (ETAAS) was also used, which has a greater sensitivity, to quantify lead. There was ∼2.1μg/g lead in the NTS and ∼3.1μg/g lead in the HDA of exposed rats, and no lead in the control rats. There were greater lead levels in the HDA (∼50%) as compared with the NTS. Pathology studies revealed more prominent lead granules in the HDA as compared with the NTS. Increased microglia and astrocyte activation was also noted in the NTS of lead exposed rats as compared with the HDA. Regional differences in neuro-inflammatory responses likely contribute to heterogeneous lead accumulation, with enhanced clearance of lead in the NTS. Future studies will resolve the mechanisms underpinning tissue-specific lead accumulation.

Guimarães, D., J. P. Santos, M. L. Carvalho, M. S. Diniz, B. House, and V. M. Miller. "Analytical evidence of heterogeneous lead accumulation in the hypothalamic defence area and nucleus tractus solitarius." NeuroToxicology. 44 (2014): 91-97. AbstractWebsite

Lead is a potent toxicant associated with adverse cardiovascular effects and hypertension in children. Yet, few studies have determined if autonomic dysfunction associated with lead exposure involves brain regions which regulate autonomic responses. Central autonomic nuclei such as the nucleus tractus solitarius (NTS) and hypothalamic defence area (HDA) may be particularly sensitive to lead infiltration because they are adjacent to ventricles and areas with semi-permeable blood-brain-barriers. To understand if autonomic nuclei are sensitive to lead accumulation Wistar rats were exposed to lead from the gestational period and lead levels were quantified in brain regions that regulate arterial pressure: the NTS and the HDA. Energy dispersive X-ray fluorescence (EDXRF) was used to quantify total brain lead levels and revealed no differences between exposed and control tissues; measured values were close to the detection limit (2μg/g). Electrothermal atomic absorption spectrometry (ETAAS) was also used, which has a greater sensitivity, to quantify lead. There was ∼2.1μg/g lead in the NTS and ∼3.1μg/g lead in the HDA of exposed rats, and no lead in the control rats. There were greater lead levels in the HDA (∼50%) as compared with the NTS. Pathology studies revealed more prominent lead granules in the HDA as compared with the NTS. Increased microglia and astrocyte activation was also noted in the NTS of lead exposed rats as compared with the HDA. Regional differences in neuro-inflammatory responses likely contribute to heterogeneous lead accumulation, with enhanced clearance of lead in the NTS. Future studies will resolve the mechanisms underpinning tissue-specific lead accumulation.

Saponaro, A., S. R. Pauleta, F. Cantini, M. Matzapetakis, C. Hammann, C. Donadoni, L. Hu, G. Thiel, L. Banci, B. Santoro, and A. Moroni. "Structural basis for the mutual antagonism of cAMP and TRIP8b in regulating HCN channel function." Proc Natl Acad Sci U S A. 111 (2014): 14577-82. AbstractWebsite

cAMP signaling in the brain mediates several higher order neural processes. Hyperpolarization-activated cyclic nucleotide-gated (HCN) channels directly bind cAMP through their cytoplasmic cyclic nucleotide binding domain (CNBD), thus playing a unique role in brain function. Neuronal HCN channels are also regulated by tetratricopeptide repeat-containing Rab8b interacting protein (TRIP8b), an auxiliary subunit that antagonizes the effects of cAMP by interacting with the channel CNBD. To unravel the molecular mechanisms underlying the dual regulation of HCN channel activity by cAMP/TRIP8b, we determined the NMR solution structure of the HCN2 channel CNBD in the cAMP-free form and mapped on it the TRIP8b interaction site. We reconstruct here the full conformational changes induced by cAMP binding to the HCN channel CNBD. Our results show that TRIP8b does not compete with cAMP for the same binding region; rather, it exerts its inhibitory action through an allosteric mechanism, preventing the cAMP-induced conformational changes in the HCN channel CNBD.

Katriel, Jacob, J. P. Marques, P. Indelicato, A. M. Costa, M. C. Martins, J. P. Santos, and F. Parente. "Approach towards the critical charge of some excited states of the Be isoelectronic series." Physical Review A. 90 (2014): 052519-5. AbstractWebsite
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Santos, I., M. S. Diniz, M. L. Carvalho, and J. P. Santos. "Assessment of Essential Elements and Heavy Metals Content on Mytilus galloprovincialis from River Tagus Estuary." Biological Trace Element Research (2014). AbstractWebsite

Trace elemental content was analysed in edible tissues of Mytilus galloprovincialis collected in five different sampling areas near the mouth of river Tagus estuary in Lisbon. The concentrations of essential elements (S, K, Ca, Fe, Cu, Zn, As, Br and Sr) were determined by energy-dispersive X-ray fluorescence (EDXRF) spectrometry, while toxic elements (Cr, Cd, Hg, Se and Pb) were measured by inductively coupled plasma-atomic emission spectrometry (ICP-AES). The results show that the essential elements K and S are present at the highest concentrations in all the studied samples reaching 2,920 and 4,520 μg g(-1) (fresh weight), respectively. The highest levels of heavy metals found were in two areas close to the city for Pb and Cd, but below the maximum allowed values.

Moura, I., C. Carreira, S. Pauleta, R. F. Nunes, J. J. Moura, S. Ramos, S. Dell'acqua, and O. Einsle. "INSIGHTS INTO THE CATALYTICCYCLE OF Pseudomonas nautica NITROUS OXIDE REDUCTASE." Journal of Biological Inorganic Chemistry. Vol. 19. J Biol Inorg Chem, 19. 2014. S104. Abstract
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