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2020
Ribeiro, Diana O., Aldino Viegas, Virgínia M. R. Pires, João Medeiros-Silva, Pedro Bule, Wengang Chai, Filipa Marcelo, Carlos M. G. A. Fontes, Eurico J. Cabrita, Angelina S. Palma, and Ana Luísa Carvalho. "Molecular basis for the preferential recognition of beta 1,3-1,4-glucans by the family 11 carbohydrate-binding module from Clostridium thermocellum." The FEBS journal. 287 (2020): 2723-2743. Abstract

Understanding the specific molecular interactions between proteins and $\beta$1,3-1,4-mixed-linked d-glucans is fundamental to harvest the full biological and biotechnological potential of these carbohydrates and of proteins that specifically recognize them. The family 11 carbohydrate-binding module from Clostridium thermocellum (CtCBM11) is known for its binding preference for $\beta$1,3-1,4-mixed-linked over $\beta$1,4-linked glucans. Despite the growing industrial interest of this protein for the biotransformation of lignocellulosic biomass, the molecular determinants of its ligand specificity are not well defined. In this report, a combined approach of methodologies was used to unravel, at a molecular level, the ligand recognition of CtCBM11. The analysis of the interaction by carbohydrate microarrays and NMR and the crystal structures of CtCBM11 bound to $\beta$1,3-1,4-linked glucose oligosaccharides showed that both the chain length and the position of the $\beta$1,3-linkage are important for recognition, and identified the tetrasaccharide Glc$\beta$1,4Glc$\beta$1,4Glc$\beta$1,3Glc sequence as a minimum epitope required for binding. The structural data, along with site-directed mutagenesis and ITC studies, demonstrated the specificity of CtCBM11 for the twisted conformation of $\beta$1,3-1,4-mixed-linked glucans. This is mediated by a conformation-selection mechanism of the ligand in the binding cleft through CH-$π$ stacking and a hydrogen bonding network, which is dependent not only on ligand chain length, but also on the presence of a $\beta$1,3-linkage at the reducing end and at specific positions along the $\beta$1,4-linked glucan chain. The understanding of the detailed mechanism by which CtCBM11 can distinguish between linear and mixed-linked $\beta$-glucans strengthens its exploitation for the design of new biomolecules with improved capabilities and applications in health and agriculture. DATABASE: Structural data are available in the Protein Data Bank under the accession codes 6R3M and 6R31.

Duarte, Susana, {Maria Rosário} do Cabrita, and V. Cruz-Machado. "Business model, lean and green management and industry 4.0: A conceptual relationship." Proceedings of the 13th International Conference on Management Science and Engineering Management, 2019 - Volume 1. Eds. Jiuping Xu, Gheorghe Duca, {Fang Lee } Cooke, and {Syed Ejaz } Ahmed. Advances in Intelligent Systems and Computing. Germany: Springer Verlag, 2020. 359-372. Abstract

The Industry 4.0 addresses a radical change on business processes. Through communication technology, objects interact with each other; the physical and digital worlds merge. This makes an environment more flexible, allowing to respond faster to specific customer requirements. Therefore, businesses need to rapidly adapt to avoid being left behind. A business model is required to meet the new concepts of Industry 4.0. In addition, lean and green characteristics may align with business model elements. Understanding how these concepts interact is something that need clarification. Based on literature review, a conceptual relationship between Business Model (Canvas), Lean and green management approach and Industry 4.0 approach is presented. Lean and green management characteristics are identified to be aligned through a Business Model Canvas perspective. Also, the concepts of the Industry 4.0 can be applied in each element of the Business Model Canvas. Managers and entrepreneurs can create, design or redefine their business knowing the lean and green application and Industry 4.0 execution. This research aims to contribute to the discussion of the relationships between these concepts. To the authors’ knowledge, this work is one of the first to try to relate these concepts.

Vendele, Ingrida, Janet A. Willment, Lisete M. Silva, Angelina S. Palma, Wengang Chai, Yan Liu, Ten Feizi, Maria Spyrou, Mark H. T. Stappers, Gordon D. Brown, and Neil A. R. Gow. "{Mannan detecting C-type lectin receptor probes recognise immune epitopes with diverse chemical, spatial and phylogenetic heterogeneity in fungal cell walls.}." PLoS pathogens. 16 (2020): e1007927. Abstract

During the course of fungal infection, pathogen recognition by the innate immune system is critical to initiate efficient protective immune responses. The primary event that triggers immune responses is the binding of Pattern Recognition Receptors (PRRs), which are expressed at the surface of host immune cells, to Pathogen-Associated Molecular Patterns (PAMPs) located predominantly in the fungal cell wall. Most fungi have mannosylated PAMPs in their cell walls and these are recognized by a range of C-type lectin receptors (CTLs). However, the precise spatial distribution of the ligands that induce immune responses within the cell walls of fungi are not well defined. We used recombinant IgG Fc-CTLs fusions of three murine mannan detecting CTLs, including dectin-2, the mannose receptor (MR) carbohydrate recognition domains (CRDs) 4-7 (CRD4-7), and human DC-SIGN (hDC-SIGN) and of the $\beta$-1,3 glucan-binding lectin dectin-1 to map PRR ligands in the fungal cell wall of fungi grown in vitro in rich and minimal media. We show that epitopes of mannan-specific CTL receptors can be clustered or diffuse, superficial or buried in the inner cell wall. We demonstrate that PRR ligands do not correlate well with phylogenetic relationships between fungi, and that Fc-lectin binding discriminated between mannosides expressed on different cell morphologies of the same fungus. We also demonstrate CTL epitope differentiation during different phases of the growth cycle of Candida albicans and that MR and DC-SIGN labelled outer chain N-mannans whilst dectin-2 labelled core N-mannans displayed deeper in the cell wall. These immune receptor maps of fungal walls of in vitro grown cells therefore reveal remarkable spatial, temporal and chemical diversity, indicating that the triggering of immune recognition events originates from multiple physical origins at the fungal cell surface.

Martins, L., P. Amaro, S. Pessanha, M. Guerra, J. Machado, M. L. Carvalho, J. P. Santos, and P. Indelicato. "{Overview and calculation of X-ray K-shell transition yields for comprehensive data libraries}." X-Ray Spectrom.. 62 (2020): 63-26. AbstractWebsite

The simulation of atomic relaxation relies on data libraries with tabulated partial fluorescence yield values of radiative transitions, commonly derived from the Evaluated Atomic Data Library (EADL)....

Machado, Jorge, {Patrícia M. S. } Carvalho, Ana Félix, Delfin Doutel, {José Paulo} Santos, {Maria Luísa} Carvalho, and Sofia Pessanha. "Accuracy improvement in XRF analysis for the quantification of elements ranging from tenths to thousands μg g-1in human tissues using different matrix reference materials." Journal of Analytical Atomic Spectrometry. 35 (2020): 2920-2927. Abstract

In this work, we aim at achieving the most accurate quantitative determination of elements in human tissues by means of X-ray Fluorescence spectrometry using the external calibration approach. A calibration curve built using a set of certified reference materials (CRM) of animal tissue was compared with the one obtained with a set of CRMs of plants and leaves with lower atomic number Z but with correction of the matrix using the scattering peaks of the X-ray tube anode. Finally, a calibration curve combining the two sets of CRMs was built and the accuracy of the quantification using the three methods was compared and a more precise method of quantification was obtained. This improved approach was tested on five paired samples of normal and tumour human tissue. Despite the high heterogeneity of the samples, and given the improvement in accuracy of the measurements, significant differences were found in the elemental concentration of low-Z elements. This journal is

Carvalho, Patr{\'ı}cia M. S., Sofia Pessanha, Jorge Machado, Ana Lu{\'ı}sa Silva, João Veloso, Diogo Casal, Diogo Pais, and José Paulo Santos. "Energy dispersive X-ray fluorescence quantitative analysis of biological samples with the external standard method." Spectrochimica Acta Part B: Atomic Spectroscopy. 174 (2020): 105991. AbstractWebsite
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Carvalho, Patr{\'ıcia M. S., Sofia Pessanha, Jorge Machado, Ana Lu{\'ısa Silva, João Veloso, Diogo Casal, Diogo Pais, and José Paulo Santos. "{Energy dispersive X-ray fluorescence quantitative analysis of biological samples with the external standard method}." Spectrochimica Acta Part B: Atomic Spectroscopy. 174 (2020): 105991. AbstractWebsite
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Rovisco, Ana, Andreia dos Santos, Tobias Cramer, Jorge Martins, Rita Branquinho, Hugo Águas, Beatrice Fraboni, Elvira Fortunato, Rodrigo Martins, Rui Igreja, and Pedro Barquinha. "{Piezoelectricity Enhancement of Nanogenerators Based on PDMS and ZnSnO 3 Nanowires through Microstructuration}." ACS Applied Materials & Interfaces. 12 (2020): 18421-18430. AbstractWebsite

The current trend for smart, self-sustainable, and multifunctional technology demands for the development of energy harvesters based on widely available and environmentally friendly materials. In this context, ZnSnO3 nanostructures show promising potential because of their high polarization, which can be explored in piezoelectric devices. Nevertheless, a pure phase of ZnSnO3 is hard to achieve because of its metastability, and obtaining it in the form of nanowires is even more challenging. Although some groups have already reported the mixing of ZnSnO3 nanostructures with polydimethylsiloxane (PDMS) to produce a nanogenerator, the resultant polymeric film is usually flat and does not take advantage of an enhanced piezoelectric contribution achieved through its microstructuration. Herein, a microstructured composite of nanowires synthesized by a seed-layer free hydrothermal route mixed with PDMS (ZnSnO3@PDMS) is proposed to produce nanogenerators. PFM measurements show a clear enhancement of d33 for single ZnSnO3 versus ZnO nanowires (23 ± 4 pm/V vs 9 ± 2 pm/V). The microstructuration introduced herein results in an enhancement of the piezoelectric effect of the ZnSnO3 nanowires, enabling nanogenerators with an output voltage, current, and instantaneous power density of 120 V, 13 $μ$A, and 230 $μ$W·cm-2, respectively. Even using an active area smaller than 1 cm2, the performance of this nanogenerator enables lighting up multiple LEDs and other small electronic devices, thus proving great potential for wearables and portable electronics.

Couto, Paula, Fernando Pinho, Maria João Falcão Silva, and Frederico Mesquita. "Contributos para o CICS Português: tabelas de formas de informação e da gestão e direção de projeto." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Couto, Paula, Maria João Falcão Silva, and Fernando Pinho. "Enquadramento para a definição de um CICS para Portugal." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Couto, Paula, Maria João Falcão Silva, Fernando Pinho, and João Barcelos. "Reabilitação de edifícios públicos qualificados baseada em análise multicritério." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Silva, Maria João Falcão, Paula Couto, Fernando Pinho, and Sara Silva. "Reabilitação energética de edifícios baseada na metodologia BIM." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Couto, Paula, Maria João Falcão Silva, Manuel Baião, Fernando Pinho, and Tiago Neto. "Tecnologia e custos em obras de reabilitação de edifícios escolares." CIRMARE 2020 - V Congresso Internacional “Recuperação, Manutenção e Reabilitação de Edifícios”. Online & Universidade Federal do Rio de Janeiro 2020.
Silva, Maria João Falcão, Paula Couto, and Fernando Pinho. "Inspeção e diagnóstico na reabilitação de edifícios: Intervenção num edifício público." ENCORE2020 - 4º Encontro sobre Conservação e Reabilitação de Edifícios. ISBN 978-972-49-2313-0. LNEC. Lisboa 2020.
Silva, Maria João Falcão, Paula Couto, and Fernando Pinho. "Laser Scanning no apoio à reabilitação funcional de um edifício." ENCORE2020 - 4º Encontro sobre Conservação e Reabilitação de Edifícios. ISBN 978-972-49-2313-0. LNEC. Lisboa 2020.
Silva, Maria João Falcão, Paula Couto, and Fernando Pinho. "Reabilitação energética de edifícios baseada na metodologia BIM." ENCORE2020 - 4º Encontro sobre Conservação e Reabilitação de Edifícios. ISBN 978-972-49-2313-0. LNEC. Lisboa 2020.
Couto, Paula, Maria João Falcão Silva, Manuel Baião, and Fernando Pinho. "Tecnologias e custos em intervenções de reabilitação: Aplicação a edifícios escolares." ENCORE2020 - 4º Encontro sobre Conservação e Reabilitação de Edifícios. ISBN 978-972-49-2313-0. LNEC. Lisboa 2020.
Couto, Paula, Maria João Falcão Silva, and Fernando Pinho. "Contributos para um CICS nacional: Tabelas de produtos, de propriedades, de formas de informação, de gestão e direção de Projeto e de elementos." 3º Congresso Português de Building Information Modelling. ISBN 978-972-752-272-9. FEUP. Porto 2020.
Silva, Sara, Maria João Falcão, Paula Couto, and Fernando Pinho. "BIM methodology in energetic rehabilitation of buildings: application to a public research laboratory." REHABEND 2020 - Euro-American Congress on Construction Pathology, Rehabilitation Technology and Heritage Management. ISBN: 978-84-09-17873-5. University of Cantabria, Spain 2020.
Lopes, João, Maria João Falcão Silva, Paula Couto, and Fernando Pinho. "BIM methodology to support the functional rehabilitation of a building." REHABEND 2020 - Euro-American Congress on Construction Pathology, Rehabilitation Technology and Heritage Management. ISBN: 978-84-09-17873-5. University of Cantabria, Spain 2020.
Neto, Tiago, Paula Couto, Maria João Falcão Silva, and Fernando Pinho. "Costs and technologies in school buildings rehabilitation works." REHABEND 2020 - Euro-American Congress on Construction Pathology, Rehabilitation Technology and Heritage Management. ISBN: 978-84-09-17873-5. University of Cantabria, Spain 2020.
Barcelos, João, Maria João Falcão Silva, Paula Couto, and Fernando Pinho. "Multicriteria analysis to support decision in public buildings rehabilitation interventions." REHABEND 2020 - Euro-American Congress on Construction Pathology, Rehabilitation Technology and Heritage Management. ISBN: 978-84-09-17873-5. University of Cantabria, Spain 2020.
Perdigão, Patrícia, Bruno Miguel Morais Faustino, Jaime Faria, João Paulo Canejo, João Paulo Borges, Isabel Ferreira, and Ana Catarina Baptista. "Conductive Electrospun Polyaniline/Polyvinylpyrrolidone Nanofibers: Electrical and Morphological Characterization of New Yarns for Electronic Textiles." 8.4 (2020): 24. Abstract
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Carreira, Cíntia, Rute F. Nunes, Olga Mestre, Isabel Moura, and Sofia R. Pauleta. "The effect of pH on Marinobacter hydrocarbonoclasticus denitrification pathway and nitrous oxide reductase." 25.7 (2020): 927-940. AbstractWebsite

Increasing atmospheric concentration of N2O has been a concern, as it is a potent greenhouse gas and promotes ozone layer destruction. In the N-cycle, release of N2O is boosted upon a drop of pH in the environment. Here, Marinobacter hydrocarbonoclasticus was grown in batch mode in the presence of nitrate, to study the effect of pH in the denitrification pathway by gene expression profiling, quantification of nitrate and nitrite, and evaluating the ability of whole cells to reduce NO and N2O. At pH 6.5, accumulation of nitrite in the medium occurs and the cells were unable to reduce N2O. In addition, the biochemical properties of N2O reductase isolated from cells grown at pH 6.5, 7.5 and 8.5 were compared for the first time. The amount of this enzyme at acidic pH was lower than that at pH 7.5 and 8.5, pinpointing to a post-transcriptional regulation, though pH did not affect gene expression of N2O reductase accessory genes. N2O reductase isolated from cells grown at pH 6.5 has its catalytic center mainly as CuZ(4Cu1S), while that from cells grown at pH 7.5 or 8.5 has it as CuZ(4Cu2S). This study evidences that an in vivo secondary level of regulation is required to maintain N2O reductase in an active state.