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2025
Rotatori, Filippo Maria, Fernando Escaso, Bruno Camilo, Filippo Bertozzo, Elisabete Malafaia, Octávio Mateus, Pedro Mocho, Francisco Ortega, and Miguel Moreno-Azanza and. "Evidence of large-sized ankylopollexian dinosaurs (Ornithischia: Iguanodontia) in the Upper Jurassic of Portugal." Journal of Systematic Palaeontology. 23 (2025): 2470789. Abstractevidence_of_large-sized_ankylopollexian_dinosaurs__ornithischia__iguanodontia__in_the_upper_jurassic_of_portugal.pdfWebsite

The Upper Jurassic beds of the Lusitanian Basin in central Portugal yield diverse dinosaurian fauna, dated to the Kimmeridgian–Tithonian interval. Saurischian dinosaurs are, overall, more abundant than their ornithischian counterparts, in terms of both specimens collected and species recognized. Iguanodontians are so far represented by the styracosternan Draconyx loureiroi, the dryosaurid Eousdryosaurus nanohallucis and the enigmatic dryomorphan Hesperonyx martinhotomasorum. Here we aim to highlight the diversity of this clade in the Late Jurassic of Portugal, presenting evidence for yet another species of ankylopollexian iguanodontian dinosaur, represented by the specimen SHN.JJS.015, which is housed at the Sociedade de História Natural, Torres Vedras. Detailed comparisons rule out attribution to previously known taxa, and phylogenetic analyses that include SHN.JJS.015 indicate early-diverging ankylopollexian affinities for this specimen. As there is no robust diagnosis, we do not erect a new formal species for it at this stage. Nevertheless, this specimen represents a previously unreported taxon that highlights greater diversity than previously estimated among the iguanodontians of the Late Jurassic and highlights the importance of Europe in diversification and dispersal events of this clade. A series of smaller, isolated femora from the same sub-basin as SHN.JJS.015 may represent the same taxon, presenting evidence of thriving communities of ankylopollexians during the Kimmeridgian–Tithonian interval in Portugal.

Ayık, H., Vítor H. Fernandes, and E. Korkmaz. "On monoids of monotone partial transformations of a finite chain whose domains and ranges are intervals." Algebra and Discrete Mathematics (DOI 10.12958/adm2403). 40.1 (2025): 1-13. AbstractWebsite

In this note, we consider the monoid PIM_n of all partial monotone transformations on a chain with n elements whose domains and ranges are intervals and its submonoid IM_n constituted by the full transformations. For both of these monoids, our aim is to determine their cardinalities and ranks and define them by means of presentations. We also calculate the number of nilpotent elements of PIM_n.

Ahmad, Reem, Jessica Cantwell, Carolina Borrelli, Pei Lim, Derek D'Souza, Mark N. Gaze, Syed Moinuddin, Jennifer Gains, and Catarina Veiga. "Development of age-specific population-based paediatric computational phantoms for image-based data mining and other radiotherapy applications." Biomedical Physics & Engineering Express (2025). AbstractWebsite
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Costa-Camilo, Eduardo, Fátima Cardoso, Isabel Duarte, Graça P. Carvalho, João M. G. C. F. de Almeida, Rita G. Sobral, and Carla Pinheiro. "Mediterranean Diet as a Nutraceutical and Sustainable Model for Health and Environmental Wellbeing." Gastronomy. 3 (2025): 17. AbstractWebsite
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de Randi, Ricardo Paula, Andreia Romero Fanton, Leandro Mouta Trautwein, Luiz Carlos de Almeida, and António Pinho Ramos. "Numerical analysis of fire-induced effects on load carrying capacity of slab-column connections under unbalanced moments." fib Symposium. 2025. 68-77. Abstract
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Ramos, António, Carla Marchão, Dario Coronelli, Duarte Faria, Fausta Fiorillo, Gianpaolo Rosati, Jaroslav Halvonik, João Pacheco de Almeida, Jorge de Brito, Luca Martinelli, Marco Lamperti, Miguel Fernandez Ruiz, Monica Lavagna, Robert Vollum, and Rui Marreiros. "Project RecycleSlab - Structural Behaviour of Recycled Aggregate Reinforced Concrete Flat Slabs with Drop Panels Under Seismic and Cyclic Actions." Lecture Notes in Civil Engineering. 718 LNCE (2025): 206-216. AbstractWebsite
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Viola, Catarina, César AT Laia, L. F. Vieira Ferreira, Filipe Folgosa, João Pedro Veiga, João Carlos Lima, Andreia Ruivo, and João Avó. "Selenium-doped zeolites as sustainable NIR emitters: a comprehensive photophysical study." Journal of Materials Chemistry C. 13 (2025): 22028-22040. Abstract
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Black, James R. M., Gabor Bartha, Charles W. Abbott, Sean M. Boyle, Takahiro Karasaki, Bailiang Li, Rui Chen, and others. "Ultrasensitive ctDNA detection for preoperative disease stratification in early-stage lung adenocarcinoma." Nature Medicine. 31 (2025): 70-76. AbstractWebsite
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2024
Matos, Sérgio, Yihan Ma, Qi Luo, Jonas Deuermeier, Luca Lucci, Panagiotis Gavriilidis, Asal Kiazadeh, and et al. "Reconfigurable Intelligent Surfaces for THz: Hardware Impairments and Switching Technologies." 2024 International Conference on Electromagnetics in Advanced Applications (ICEAA). IEEE, 2024. 415-420. Abstract
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Kiazadeh, Asal, Jonas Deuermeier, Emanuel Carlos, Rodrigo Martins, Sérgio Matos, \{Fábio Martinho\} Cardoso, and \{Luís Manuel\} Pessoa. "Concept paper on novel radio frequency resistive switches." NANOARCH '23. Eds. Ronald Tetzlaff, Fernando Corinto, Neil Kemp, Alon Ascoli, Andreas Mögel, \{Meng-Fan(Marvin)\} Chang, \{Joseph S. \} Friedman, Siting Liu, \{John Paul\} Strachan, Stephan Menzel, \{Mehdi B. \} Tahoori, Martin Ziegler, Jason Eshraghian, Ioannis Messaris, Christian Koitzsch, Thomas Mikolajick, and Vasileios Ntinas. Nanoarch: IEEE/ACM International Symposium on Nanoscale Architectures. United States: ACM - Association for Computing Machinery, 2024. 1-3. Abstract

For reconfigurable radios where the signals can be easily routed from one band to another band, new radio frequency switches (RF) are a fundament. The main factor driving the power consumption of the reconfigurable intelligent system (RIS) is the need for an intermediate device with static power consumption to maintain a certain surface configuration state. Since power usage scales quadratically with the RIS area, there is a relevant interest in mitigating this drawback so that this technology can be applied to everyday objects without needing such a high intrinsic power consumption. Current switch technologies such as PIN diodes, and field effect transistors (FETs) are volatile electronic devices, resulting in high static power. In addition, dynamic power dissipation related to switching event is also considerable. Regarding energy efficiency, non-volatile radio frequency resistive switch (RFRS) concept may be better alternative solution due to several advantages: smaller area, zero-hold voltage, lower actuation bias for operation, short switching time, scalability and capable to be fabricated in the backend-of-line of standard CMOS process.

Jiménez-Mejías, Pedro, Saúl Manzano, Vinita Gowda, Frank-Thorsten Krell, Mei-Ying Lin, Santiago Martín-Bravo, Laura Martín-Torrijos, Gonzalo Nieto Feliner, Sergei L. Mosyakin, Robert F. C. Naczi, Carmen Acedo, Inés Álvarez, Jorge V. Crisci, Modesto Luceño Garcés, John Manning, Juan Carlos Moreno Saiz, Muthama A. Muasya, Ricarda Riina, Andrea Sánchez Meseguer, Daniel Sánchez-Mata, and 1543 additional coauthors. "Protecting stable biological nomenclatural systems enables universal communication: A collective international appeal." 74.7 (2024): 467-472. AbstractWebsite

The fundamental value of universal nomenclatural systems in biology is that they enable unambiguous scientific communication. However, the stability of these systems is threatened by recent discussions asking for a fairer nomenclature, raising the possibility of bulk revision processes for “inappropriate” names. It is evident that such proposals come from very deep feelings, but we show how they can irreparably damage the foundation of biological communication and, in turn, the sciences that depend on it. There are four essential consequences of objective codes of nomenclature: universality, stability, neutrality, and transculturality. These codes provide fair and impartial guides to the principles governing biological nomenclature and allow unambiguous universal communication in biology. Accordingly, no subjective proposals should be allowed to undermine them.

Azevedo, Afonso, Mariana P. Coelho, Jacinta O. Pinho, Paula I. P. Soares, Catarina P. Reis, João P. Borges, and Manuela M. Gaspar. "An alternative hybrid lipid nanosystem combining cytotoxic and magnetic properties as a tool to potentiate antitumor effect of 5-fluorouracil." (2024): 122558. Abstract
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Caseiro, Catarina, Nicholas G. S. McGregor, Victor Diogo Alves, Ana Luísa Carvalho, Maria João Romão, Gideon J. Davies, Carlos M. G. A. Fontes, and Pedro Bule. "Family GH157 enzyme exhibits broad linkage tolerance and a dual endo/exo- β -glucanase activity on β-glucans." (2024): 137402. AbstractWebsite

The structural and chemical diversity of β-glucans is reflected on the variety of essential biological roles tackled by these polysaccharides. This natural heterogeneity requires an elaborate assortment of enzymatic mechanisms to assemble, degrade or modify, as well as to extract their full biotechnological potential. Recent metagenomic efforts have provided an unprecedented growth in potential new biocatalysts, most of which remain unconfirmed or uncharacterized. Here we report the first biochemical and structural characterization of two bacterial β-glucanases from the recently created glycoside hydrolase family 157 (LaGH157 and BcGH157) and investigate their molecular basis for substrate hydrolysis. Structural analysis by X-ray crystallography revealed that GH157 enzymes belong to clan GH-A, possessing a (β/α)8-barrel fold catalytic domain, two β-sandwich accessory domains and two conserved catalytic glutamates residues, with relative positions compatible with a retaining mechanism of hydrolysis. Specificity screening and enzyme kinetics suggest that the enzymes prefer mixed-linkage glucans over β-1,3-glucans. Activity screening showed that both enzymes exhibit pH optimum at 6.5 and temperature optimum for LaGH157 and BcGH157 at 25 °C and 48 °C, respectively. Product analysis with HPAEC-PAD and LC-MS revealed that both enzymes are endo-1,3(4)-β-glucanases, capable of cleaving β-1,3 and β-1,4-linked glucoses, when preceded by a β-1,3 linkage. Moreover, BcGH157 needs a minimum of 4 subsites occupied for hydrolysis to occur, while LaGH157 only requires 3 subsites. Additionally, LaGH157 possesses exohydrolytic activity on β-1,3 and branching β-1,6 linkages. This unusual bifunctional endo-1,3(4)/exo-1,3–1,6 activity constitutes an expansion on our understanding of β-glucan deconstruction, with the potential to inspire future applications.

Pan, Xiaoxi, Khalid AbdulJabbar, Jose Coelho-Lima, Anca-Ioana Grapa, Hanyun Zhang, Alvin Ho Kwan Cheung, Juvenal Baena, and others. "The artificial intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma." Nature Cancer. 5 (2024): 347-363. AbstractWebsite
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da Silva, Vicente M., and A. N. Antão. "Computational Upper- and Lower-Bound 3D Limit Analysis Using the Hoek–Brown Yield Criterion." International Journal of Geomechanics. 24 (2024): 04024036. AbstractWebsite

The Hoek–Brown failure criterion has been widely applied to predict the strength of rock masses, demonstrating its relevance in diverse geotechnical contexts. This paper presents a novel 3D numerical implementation of the Hoek–Brown criterion in a finite-element limit analysis code. The proposed formulation is unique in its ability to produce strict upper and lower bounds for 3D problems, providing more accurate and reliable predictions of failure mechanisms compared to previous formulations. The validity of the formulation is demonstrated through comparisons with known analytical solutions or other authors’ numerical solutions. Furthermore, the proposed numerical tool is used to determine the stability of shallow circular tunnels in rock masses, highlighting its practical applicability in engineering design.

Hobor, Sebastijan, Maise Al Bakir, Crispin T. Hiley, Marcin Skrzypski, Alexander M. Frankell, Bjorn Bakker, Thomas B. K. Watkins, and others. "Mixed responses to targeted therapy driven by chromosomal instability through p53 dysfunction and genome doubling." Nature Communications. 15 (2024). AbstractWebsite
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Haque, S., M. Alexandre, A. T. Vicente, K. Li, C. S. Schuster, S. Yang, H. Águas, R. Martins, R. A. S. Ferreira, and MJ Mendes. "Photon shifting and trapping in perovskite solar cells for improved efficiency and stability." Light: Science and Applications. 13 (2024). AbstractWebsite
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Akalin, S. A., M. Erol, B. Uzunbayir, S. Oguzlar, S. Yildirim, F. P. Gokdemir Choi, S. Gunes, U. D. Yilmazer Menda, and MJ Mendes. "Physically-Deposited Hole Transporters in Perovskite PV: NiOx Improved with Li/Mg Doping." Advanced Materials Technologies. 9 (2024). AbstractWebsite
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Hynds, Robert E., Ariana Huebner, David R. Pearce, Mark S. Hill, Ayse U. Akarca, David A. Moore, Sophia Ward, and others. "Representation of genomic intratumor heterogeneity in multi-region non-small cell lung cancer patient-derived xenograft models." Nature Communications. 15 (2024). AbstractWebsite
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Alexandre, M., I. M. Santos, R. Martins, and MJ Mendes. "SCATMM: Easy-to-Use Graphical User Interface for Light Propagation in Arbitrary Multilayers." Journal of Open Research Software. 12 (2024). AbstractWebsite
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S. Fernandes, I., D. Antunes, R. Martins, MJ Mendes, and A. S. Reis-Machado. "Solar fuels design: Porous cathodes modeling for electrochemical carbon dioxide reduction in aqueous electrolytes." Heliyon. 10 (2024). AbstractWebsite
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Marques, N., S. Jana, MJ Mendes, H. Águas, R. Martins, and S. Panigrahi. "Surface modification of halide perovskite using EDTA-complexed SnO2 as electron transport layer in high performance solar cells." RSC Advances. 14 (2024): 12397-12406. AbstractWebsite
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Akalin, S. A., T. Mateus, G. Ribeiro, J. Deuermeier, T. Calmeiro, H. Águas, R. Martins, A. T. Vicente, MJ Mendes, and U. D. Yilmazer Menda. "Ultra-flexible, high-performing NAN transparent electrodes for bendable optoelectronic applications." Journal of Materials Science: Materials in Electronics. 35 (2024). AbstractWebsite
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Alexandre, M., H. Águas, E. Fortunato, R. Martins, and MJ Mendes. "Understanding the Potential of Light Absorption in Dots-in-Host Semiconductors." ACS Photonics (2024). AbstractWebsite
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2023
Guerra-Guimarães, Leonor, Carla Pinheiro, Ana Sofia F. Oliveira, Andrea Mira-Jover, Javier Valverde, Fernanda A. F. de Guedes, Herlander Azevedo, Vitor Várzea, and Antonio Jesús Muñoz Pajares. "The chloroplast protein HCF164 is predicted to be associated with Coffea SH9 resistance factor against Hemileia vastatrix." Scientific Reports. 13 (2023). AbstractWebsite
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