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Submitted
Denifl, Stephan, Fabio Zappa, Ingo Maehr, Filipe Ferreira da Silva, Abid Aleem, Andreas Mauracher, Michael Probst, Jan Urban, Pavel Mach, Arntraud Bacher, Olof Echt, Tilmann D. Maerk, and Paul Scheier. "{Ion-Molecule Reactions in Helium Nanodroplets Doped with C-60 and Water Clusters}." {ANGEWANDTE CHEMIE-INTERNATIONAL EDITION}. {48} (Submitted): {8940-8943}. Abstract
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Khreis, J., J. Ameixa, M. Neustetter, J. Reitshammer, F. Ferreira da Silva, and S. Denifl. "{Low-energy electron interactions with chromium hexacarbonyl Cr(CO)(6)}." {XXX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2017)}. Eds. A. {Bray, S. Hodgman, J. Machacek, and A. } Kheifets. Vol. {875}. {Journal of Physics Conference Series}, {875}. Submitted. Abstract
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Blanco, F., A. Munoz, D. Almeida, F. Ferreira da Silva, P. Limao-Vieira, A. Verkhovtsev, L. Ellis-Gibbings, K. Krupa, A. Traore, and G. Garcia. "{Modeling secondary particle tracks generated by high-energy protons in water}." {XXIX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2015), PTS 1-12}. Eds. C. {Diaz, I. Rabadan, G. Garcia, L. Mendez, and F. } Martin. Vol. {635}. {Journal of Physics Conference Series}, {635}. Submitted. Abstract
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Almeida, D., D. Kinzel, Ferreira F. Da Silva, B. Puschnigg, D. Gschliesser, P. Scheier, S. Denifl, G. Garcia, L. Gonzalez, and P. Limao-Vieira. "{N-site de-methylation in pyrimidine bases as studied by low energy electrons and ab initio calculations}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {15} (Submitted): {11431-11440}. Abstract
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Almeida, D., F. Ferreira da Silva, G. Garcia, and P. Limao-Vieira. "{Negative ion chemistry of Deoxyribose and THF upon potassium atom collisions}." {XXVIII INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC AND ATOMIC COLLISIONS (ICPEAC)}. Vol. {488}. {Journal of Physics Conference Series}, {488}. Submitted. Abstract
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Ferreira da Silva, F., D. Almeida, G. Martins, Y. Nunes, G. Garcia, and P. Limao-Vieira. "{Site and bond selective H- formation in methylated pyrimidine bases driven by potassium molecule collisions}." {XXVII INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC AND ATOMIC COLLISIONS (ICPEAC 2011), PTS 1-15}. Eds. ID {Williams, HW VanDerHart, JF McCann, and DSF} Crothers. Vol. {388}. {Journal of Physics Conference Series}, {388}. Submitted. Abstract
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Ferreira da Silva, F., D. Almeida, G. Garcia, and P. Limao-Vieira. "{Site- and bond-selective H- formation in methylated pyrimidine bases driven by potassium-molecule collisions}." {XXVII INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC AND ATOMIC COLLISIONS (ICPEAC 2011), PTS 1-15}. Eds. ID {Williams, HW VanDerHart, JF McCann, and DSF} Crothers. Vol. {388}. {Journal of Physics Conference Series}, {388}. Submitted. Abstract
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Da Silva, Ferreira F., M. Nobre, A. Fernandes, R. Antunes, D. Almeida, G. Garcia, N. J. Mason, and P. Limao-Vieira. "{Spectroscopic studies of ketones as a marker for patients with diabetes}." {RADIATION DAMAGE IN BIOMOLECULAR SYSTEMS}. Ed. KG} {McGuigan. Vol. {101}. {Journal of Physics Conference Series}, {101}. Submitted. Abstract
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Da Silva, Ferreira F., D. Almeida, G. Martins, A. R. Milosavljevic, B. P. Marinkovic, S. V. Hoffmann, N. J. Mason, Y. Nunes, G. Garcia, and P. Limao-Vieira. "{The electronic states of pyrimidine studied by VUV photoabsorption and electron energy-loss spectroscopy}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {12} (Submitted): {6717-6731}. Abstract
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Ferreira da Silva, F., J. Rafael, A. Rebelo, D. Almeida, and P. Limao-Vieira. "{The role of side chains in electron transfer induced fragmentation of amino-acids}." {XXVIII INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC AND ATOMIC COLLISIONS (ICPEAC)}. Vol. {488}. {Journal of Physics Conference Series}, {488}. Submitted. Abstract
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Nobre, M., A. Fernandes, Ferreira F. Da Silva, R. Antunes, D. Almeida, V. Kokhan, S. V. Hoffmann, N. J. Mason, S. Eden, and P. Limao-Vieira. "{The VUV electronic spectroscopy of acetone studied by synchrotron radiation}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {10} (Submitted): {550-560}. Abstract
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In Press
Alan J. Cain, António Malheiro, Duarte Ribeiro. "Identities and bases in the sylvester and Baxter monoids." Journal of Algebraic Combinatorics (In Press).
Dias, S., A. Gama, P. Abrantes, M. I. Gomes, M. Fonseca, V. Reigado, D. Simões, E. Carreiras, C. Mora, A. Pinto Ferreira, O. Akpogheneta, and MO Martins. "Patterns of Sexual Risk Behavior, HIV Infection, and Use of Health Services Among Sub-Saharan African Migrants in Portugal." The Journal of Sex Research 19 (In Press).Website
2025
Rotatori, Filippo Maria, Fernando Escaso, Bruno Camilo, Filippo Bertozzo, Elisabete Malafaia, Octávio Mateus, Pedro Mocho, Francisco Ortega, and Miguel Moreno-Azanza and. "Evidence of large-sized ankylopollexian dinosaurs (Ornithischia: Iguanodontia) in the Upper Jurassic of Portugal." Journal of Systematic Palaeontology. 23 (2025): 2470789. Abstractevidence_of_large-sized_ankylopollexian_dinosaurs__ornithischia__iguanodontia__in_the_upper_jurassic_of_portugal.pdfWebsite

The Upper Jurassic beds of the Lusitanian Basin in central Portugal yield diverse dinosaurian fauna, dated to the Kimmeridgian–Tithonian interval. Saurischian dinosaurs are, overall, more abundant than their ornithischian counterparts, in terms of both specimens collected and species recognized. Iguanodontians are so far represented by the styracosternan Draconyx loureiroi, the dryosaurid Eousdryosaurus nanohallucis and the enigmatic dryomorphan Hesperonyx martinhotomasorum. Here we aim to highlight the diversity of this clade in the Late Jurassic of Portugal, presenting evidence for yet another species of ankylopollexian iguanodontian dinosaur, represented by the specimen SHN.JJS.015, which is housed at the Sociedade de História Natural, Torres Vedras. Detailed comparisons rule out attribution to previously known taxa, and phylogenetic analyses that include SHN.JJS.015 indicate early-diverging ankylopollexian affinities for this specimen. As there is no robust diagnosis, we do not erect a new formal species for it at this stage. Nevertheless, this specimen represents a previously unreported taxon that highlights greater diversity than previously estimated among the iguanodontians of the Late Jurassic and highlights the importance of Europe in diversification and dispersal events of this clade. A series of smaller, isolated femora from the same sub-basin as SHN.JJS.015 may represent the same taxon, presenting evidence of thriving communities of ankylopollexians during the Kimmeridgian–Tithonian interval in Portugal.

2024
Azevedo, Afonso, Mariana P. Coelho, Jacinta O. Pinho, Paula I. P. Soares, Catarina P. Reis, João P. Borges, and Manuela M. Gaspar. "An alternative hybrid lipid nanosystem combining cytotoxic and magnetic properties as a tool to potentiate antitumor effect of 5-fluorouracil." (2024): 122558. Abstract
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Caseiro, Catarina, Nicholas G. S. McGregor, Victor Diogo Alves, Ana Luísa Carvalho, Maria João Romão, Gideon J. Davies, Carlos M. G. A. Fontes, and Pedro Bule. "Family GH157 enzyme exhibits broad linkage tolerance and a dual endo/exo- β -glucanase activity on β-glucans." (2024): 137402. AbstractWebsite

The structural and chemical diversity of β-glucans is reflected on the variety of essential biological roles tackled by these polysaccharides. This natural heterogeneity requires an elaborate assortment of enzymatic mechanisms to assemble, degrade or modify, as well as to extract their full biotechnological potential. Recent metagenomic efforts have provided an unprecedented growth in potential new biocatalysts, most of which remain unconfirmed or uncharacterized. Here we report the first biochemical and structural characterization of two bacterial β-glucanases from the recently created glycoside hydrolase family 157 (LaGH157 and BcGH157) and investigate their molecular basis for substrate hydrolysis. Structural analysis by X-ray crystallography revealed that GH157 enzymes belong to clan GH-A, possessing a (β/α)8-barrel fold catalytic domain, two β-sandwich accessory domains and two conserved catalytic glutamates residues, with relative positions compatible with a retaining mechanism of hydrolysis. Specificity screening and enzyme kinetics suggest that the enzymes prefer mixed-linkage glucans over β-1,3-glucans. Activity screening showed that both enzymes exhibit pH optimum at 6.5 and temperature optimum for LaGH157 and BcGH157 at 25 °C and 48 °C, respectively. Product analysis with HPAEC-PAD and LC-MS revealed that both enzymes are endo-1,3(4)-β-glucanases, capable of cleaving β-1,3 and β-1,4-linked glucoses, when preceded by a β-1,3 linkage. Moreover, BcGH157 needs a minimum of 4 subsites occupied for hydrolysis to occur, while LaGH157 only requires 3 subsites. Additionally, LaGH157 possesses exohydrolytic activity on β-1,3 and branching β-1,6 linkages. This unusual bifunctional endo-1,3(4)/exo-1,3–1,6 activity constitutes an expansion on our understanding of β-glucan deconstruction, with the potential to inspire future applications.

da Silva, Vicente M., and A. N. Antão. "Computational Upper- and Lower-Bound 3D Limit Analysis Using the Hoek–Brown Yield Criterion." International Journal of Geomechanics. 24 (2024): 04024036. AbstractWebsite

The Hoek–Brown failure criterion has been widely applied to predict the strength of rock masses, demonstrating its relevance in diverse geotechnical contexts. This paper presents a novel 3D numerical implementation of the Hoek–Brown criterion in a finite-element limit analysis code. The proposed formulation is unique in its ability to produce strict upper and lower bounds for 3D problems, providing more accurate and reliable predictions of failure mechanisms compared to previous formulations. The validity of the formulation is demonstrated through comparisons with known analytical solutions or other authors’ numerical solutions. Furthermore, the proposed numerical tool is used to determine the stability of shallow circular tunnels in rock masses, highlighting its practical applicability in engineering design.

Haque, S., M. Alexandre, A. T. Vicente, K. Li, C. S. Schuster, S. Yang, H. Águas, R. Martins, R. A. S. Ferreira, and MJ Mendes. "Photon shifting and trapping in perovskite solar cells for improved efficiency and stability." Light: Science and Applications. 13 (2024). AbstractWebsite
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Akalin, S. A., M. Erol, B. Uzunbayir, S. Oguzlar, S. Yildirim, F. P. Gokdemir Choi, S. Gunes, U. D. Yilmazer Menda, and MJ Mendes. "Physically-Deposited Hole Transporters in Perovskite PV: NiOx Improved with Li/Mg Doping." Advanced Materials Technologies. 9 (2024). AbstractWebsite
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Alexandre, M., I. M. Santos, R. Martins, and MJ Mendes. "SCATMM: Easy-to-Use Graphical User Interface for Light Propagation in Arbitrary Multilayers." Journal of Open Research Software. 12 (2024). AbstractWebsite
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S. Fernandes, I., D. Antunes, R. Martins, MJ Mendes, and A. S. Reis-Machado. "Solar fuels design: Porous cathodes modeling for electrochemical carbon dioxide reduction in aqueous electrolytes." Heliyon. 10 (2024). AbstractWebsite
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Marques, N., S. Jana, MJ Mendes, H. Águas, R. Martins, and S. Panigrahi. "Surface modification of halide perovskite using EDTA-complexed SnO2 as electron transport layer in high performance solar cells." RSC Advances. 14 (2024): 12397-12406. AbstractWebsite
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Akalin, S. A., T. Mateus, G. Ribeiro, J. Deuermeier, T. Calmeiro, H. Águas, R. Martins, A. T. Vicente, MJ Mendes, and U. D. Yilmazer Menda. "Ultra-flexible, high-performing NAN transparent electrodes for bendable optoelectronic applications." Journal of Materials Science: Materials in Electronics. 35 (2024). AbstractWebsite
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Alexandre, M., H. Águas, E. Fortunato, R. Martins, and MJ Mendes. "Understanding the Potential of Light Absorption in Dots-in-Host Semiconductors." ACS Photonics (2024). AbstractWebsite
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2023
Gonçalves, Adriana, Beatriz T. Simões, Filipe V. Almeida, Susete N. Fernandes, Manuel Valente, Tânia Vieira, Célia Henriques, João Paulo Borges, and Paula I. P. Soares. "Engineering dual-stimuli responsive poly (vinyl alcohol) nanofibrous membranes for cancer treatment by magnetic hyperthermia." 145 (2023): 213275. Abstract
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