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2021
Fiévet, Anouchka, Meriem Merrouch, Gaël Brasseur, Danaé Eve, Emanuele G. Biondi, Odile Valette, Sofia R. Pauleta, Alain Dolla, Zorah Dermoun, Bénédicte Burlat, and Corinne Aubert. "OrpR is a σ54-dependent activator using an iron-sulfur cluster for redox sensing in Desulfovibrio vulgaris Hildenborough." Molecular MicrobiologyMolecular Microbiology. 116.1 (2021): 231-244. AbstractWebsite

Abstract Enhancer binding proteins (EBPs) are key players of σ54-regulation that control transcription in response to environmental signals. In the anaerobic microorganism Desulfovibrio vulgaris Hildenborough (DvH), orp operons have been previously shown to be coregulated by σ54-RNA polymerase, the integration host factor IHF and a cognate EBP, OrpR. In this study, ChIP-seq experiments indicated that the OrpR regulon consists of only the two divergent orp operons. In vivo data revealed that (i) OrpR is absolutely required for orp operons transcription, (ii) under anaerobic conditions, OrpR binds on the two dedicated DNA binding sites and leads to high expression levels of the orp operons, (iii) increasing the redox potential of the medium leads to a drastic down-regulation of the orp operons expression. Moreover, combining functional and biophysical studies on the anaerobically purified OrpR leads us to propose that OrpR senses redox potential variations via a redox-sensitive [4Fe?4S]2+ cluster in the sensory PAS domain. Overall, the study herein presents the first characterization of a new Fe?S redox regulator belonging to the σ54-dependent transcriptional regulator family probably advantageously selected by cells adapted to the anaerobic lifestyle to monitor redox stress conditions.

Fernandes, Alexandra E., Octávio Mateus, Blanca Bauluz, Rute Coimbra, Lope Ezquerro, Carmen Núñez-Lahuerta, Calin Suteu, and Miguel Moreno-Azanza. "The Paimogo Dinosaur Egg Clutch Revisited: Using One of Portugal’s Most Notable Fossils to Exhibit the Scientific Method." Geoheritage. 13.3 (2021): 66. Abstractfernandes_et_al-2021-geoheritage.pdfWebsite

Found in the Upper Jurassic outcrops of Lourinhã, Portugal, and first published in 1997, the Paimogo dinosaur egg clutch is one of Portugal’s most remarkable fossils, with over one hundred eggs preserved in association with embryonic bones, of the allosauroid theropod Lourinhanosaurus. However, many questions about it have remained unanswered, even until the present day. After its discovery, this extraordinary fossil became the keystone of a small local museum, greatly kick-starting regional tourism, while also holding the fossils in trust for future generations to study. More than 20 years later, continually sustained paleontological interest from the public has even given rise to both a highly successful dinosaur theme park in the region and an aspiring UNESCO Geopark. Recently, a multidisciplinary team of preparators, paleontologists, sedimentologists, mineralogists, and geochemists revisited an unopened jacket from the original excavation using an array of techniques to address various questions. Studies are ongoing, but the corpus of information obtained and the methodologies utilized to gather data have offered an opportunity to design an exhibit around the history of the Paimogo clutch, highlighting the scientific methods involved, and asserting the importance of preserving geological heritage for the future, when new tools will doubtlessly become available to provide yet another new look at old fossils. Here, we describe our analytical procedures and present an innovative exhibit designed to introduce to the public the latest advances on the research behind an iconic piece of Portuguese geoheritage, increasing its value both as a research item and as an educational resource.

Nunes, M. J., C. M. Cordas, JJG Moura, J. P. Noronha, and L. C. Branco. "Screening of Potential Stress Biomarkers in Sweat Associated with Sports Training." Sports Medicine - Open. 7.1 (2021). AbstractWebsite
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Lima, Carlos D. L., Helena Coelho, Ana Gimeno, Filipa Trovão, Ana Diniz, Jorge S. Dias, Jesús Jiménez-Barbero, Francisco Corzana, Ana Luísa Carvalho, Eurico J. Cabrita, and Filipa Marcelo. "Structural insights into the molecular recognition mechanism of the cancer and pathogenic epitope, LacdiNAc by immune-related lectins." Chemistry – A European JournalChemistry – A European Journal. n/a.n/a (2021). AbstractWebsite

Interactions of glycan-specific epitopes to human lectin receptors represent novel immune checkpoints for investigating cancer and infection diseases. By employing a multidisciplinary approach that combines isothermal titration calorimetry, NMR spectroscopy, molecular dynamics simulations, and X-ray crystallography, we disclosed the molecular determinants that govern the recognition of the tumour and pathogenic glycobiomarker LacdiNAc (GalNAc?1-4GlcNAc, LDN), including their comparison with the ubiquitous LacNAc epitope (Gal?1-4GlcNAc, LN), by two human immune-related lectins, galectin-3 (hGal-3) and the macrophage galactose C-type lectin (hMGL). A different mechanism of binding and interactions is observed for the hGal-3/LDN and hMGL/LDN complexes, which explains the remarkable difference in the binding specificity of LDN and LN by these two lectins. The new structural clues reported herein are fundamental for the chemical design of mimetics targeting hGal-3/hMGL recognition process.

Cardoso, Joao O., Joao Paulo Borges, and Alexandre Velhinho. "Structural metamaterials with negative mechanical/thermomechanical indices: A review." (2021). Abstract
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Baumann, Manuel, Jens Peters, Hüseyin Ersoy, Marcel Weil, Guy Fournier, António B. Moniz, and Nelson Chibeles Martins. "Decision making support for the selection of stationary batteries." Energy Transition and Sustainability Conference (APEEN 2021). online: CENSE, 2021.
Duarte, S., Cabrita Cruz-Machado M. R. V. "Lean and Green Modelling in Healthcare Supply Chains: The Case of Massive COVID-19 Vaccine Distribution." Proceedings of the 4th European International Conference on Industrial Engineering and Operations Management. Rome, Italy, : IEOM, 2021.
Boavida, Nuno, António Brandão Moniz, and Marta Candeias. "Changes in productivity and labour relations: AI in the automotive sector in Portugal." International Colloquium GERPISA - Le Réseau International de L’Automobile. online: ENS Paris-Saclay, 2021. Abstract

New technologies, sustainability policies, protectionism and consumers preferences are pushing for the reorganization of the automotive cluster. (ILO, 2020) Due to recent technological advances derived from the application of AI in the domains of autonomous driving, connectivity, automation, and robotics, the automotive sector is evolving from the traditional, linear, product-oriented value chain to a mobility, service oriented one including new players (ILO, 2020). In fact, in the last years, several digital competences centers are supplying the automotive sector and have been installed in Portugal. These changes are put in place to enhance the product quality, to control costs and to improve productivity. The product shift is done to respond to new regulations on environmental protection, and to enable the control of some emergent market niches.
The paper will contribute to answer the question: what are the expectable changes in productivity due to the introduction of AI in the automotive sector and at new players in the automotive value chain in Portugal? Do they have impacts in traditional labour relations in the sector? Did the COVID-19 had an effect in the acceleration of such changes? Does the employment in the automotive sector changed with the recent automation trends in Portugal? Are there signs of improvement in qualifications with increases in automation? Or can we observe a clear job precarity in the automotive labour market with increased application of cyber physical systems in this sector? We want to develop this framework of questions to collect new data and obtain results that will be based on case studies from the automotive cluster. We will use, as well, secondary statistical analysis. Finally, changes in the productivity and labour market will be discussed in relation to the employment volume and skills in the automotive sector.
In this recently approved national project, we will focus on AI (cyber-physical systems, intelligent automation, robotics, IoT) as the most relevant emergent technology to understand the development of automation in this manufacturing sector (Geels et al., 2012; Moniz 2018). R&D investments in industrial processes in general may reflect productivity improvements derived from the increased automation process, but that may not be the general trend. Our empirical data are based until now on initial case studies from the automotive and components sector combined with database search by keywords that sign intelligence automation developments and AI applications selected from national R&D projects on robotics, machine learning, collaborative tools, human-machine interaction and autonomous systems, supported by European structural funds. The implications on industrial productivity and employment will be discussed in relation to automation trends in the automotive sector.

Brandao Moniz, António, José Maria Castro Caldas, Nuno Boavida, and João Vasco Lopes. "Reconfigurations in automotive Global Value Chains (GVC) and its impact on Portuguese employment." International Colloquium GERPISA - Le Réseau International de L’Automobile. online: ENS Paris-Saclay, 2021. Abstract

In this paper we will address the impacts on work and employment in Portugal of undergoing reconfigurations in automotive Global Value Chains (GVC). Due to its contributions to employment, exports and production the automotive sector is regarded as strategic for Portugal. Currently, it is caught in the midst of a turmoil, spurred by major trends that are reshaping its global outlook, with perils and opportunities for firms and workers depending on their position in different segments of GVC. The emergence of GVC transformed the patterns of international division of labour, trade and investment. Countries and regions specialize not only in products and services but increasingly in tasks and functions. Value is created globally and is apportioned along the chain depending on the tasks performed, the resources and type of workforce engaged in production in each node, its geographical location and the relative power relations within the production network. Typically, along GVC’s production stages, labour intensive, low skill tasks are ascribed – offshored and subcontracted by lead firms – to firms and workers in peripheral countries, while knowledge intensive, more complex or higher skilled tasks are retained in core regions. The value captured, as well as the share of value ascribed to labour and the quality of employment, are broadly correlated with its position in the chain. GVC, besides firms or even sectors, thus become an appropriate locus for analysing labour processes and employment patterns.
Major trends reconfiguring automotive global networks of production, include: (i) automation; (ii) digitalisation; (iii) electrification of vehicles; (iv) shifting geographies of production; and (v) industrial, employment and social policies. Manufacture of vehicles is known to be an automation-intensive sector permeated by technological developments such as new cyber-physical systems and flexible lightweight robots with an impact on work and employment, particularly on low-skilled workers. National and regional industrial, trade and investment policies articulated with company strategies, are also participating in the reshaping of the automotive GVC and changing the geographies of production. Finally, employment and social policies impinge on and are conditioned by foreign investment and location decisions of automotive multinationals, thus participating in the reshaping of GVC. In order to respond to the main overarching research question (what are the actual and prospective impacts on work and employment in Portugal driven by transitions taking place in the automotive GVC?) an analytical model will be designed. It will place the ongoing and prospective transformations of work and employment patterns as consequence of the interplay of actor’s strategies and public policies, against the background of structures and institutions. The research study will be based on major OEM operating in Portugal (VW, Stellantis, Mitsubishi and Toyota) and on automotive supply chain companies, most of them major player on the automotive GVC (Faurecia, KWD, Vintech, Sodecia, Preh).

Peliz, Marina, Nuno Boavida, and António Brandão Moniz. "Portuguese Field Work on the Involvement of Social Partner at the Education and Training Systems." 2nd Scientific meeting of the project INVOLVE. online: Notus, 2021.
Conti, Simone, Octávio Mateus, and G. Sala. "Mechanical characterization of tibial bone material of an ostrich." Rossi V., Fanti F., Barbieri G., Cavalazzi B. & Scarponi D. (Editors) 2021. Paleodays 2021. Abstract Book del XXI Convegno della Società Paleontologica Italiana, live virtual edition: 127 pp. Bologna (Italy): University of Bologna, 2021. conti_et_al_2021_ostrich_bone.pdf
Boavida, Nuno, António Brandão Moniz, Reinhard Naumann, Isabel Roque, and Raquel Azevedo Case studies on digital labour platforms in Portugal: Final National Report of Project CrowdWork. Lisbon: CICS.NOVA, 2021. Abstract

This report is the 3rd and final report elaborated for the project CrowdWork by the Portuguese team. The text provides the context in which digital platforms operate, as well as the main governmental initiatives in some of the sectors. Five case studies provide a description of each sector and an analysis of the existing / emerging collective
organisations, their promotors, rationale and extension. In the last chapter, the text presents our main conclusions and recommendations for policy making.

Karlovich, Alexei, and Eugene Shargorodsky. "Algebras of convolution type operators with continuous data do not always contain all rank one operators." Integral Equations and Operator Theory. 93.2 (2021): 16.Website
Sara, Russo, Arnaldo Batista, Filipa Esgalhado, Catarina Palma R. dos Reis, Fátima Serrano, Valentina Vassilenko, and Manuel Ortigueira. "Alvarez waves in pregnancy: a comprehensive review." Biophysical Reviews. 1 (2021): 12.
Costa, Francisco, and Octávio Mateus The application of carved extruded polystyrene and papier-mâché clay for recreating missing bones of fossil dinosaurs for museum exhibit. XIX Encontro de Jovens Investigadores em Paleontologia, .Livro de resumos., 2021. Abstractcostamateu2021ejip.pdf

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Esgalhado, Filipa, Fernandes; Beatriz, Valentina Vassilenko, Batista; Arnaldo, and Sara Russo. "The Application of Deep Learning Algorithms for PPG Signal Processing and Classification." Computers 2021. Special Issue Computing, Electrical and Industrial Systems. 10, 158 (2021).the_application_of_deep_learning_algorithms_for_ppg_signal.pdf
Coelho, T., and H. Rocha As características do jogo e o conhecimento profissional do professor: que pontos de contacto?. XVI Congresso Internacional Galego-Portugués de Psicopedagogia. Braga, Portugal, 2021. Abstract

For most teachers, the use of games is not a common practice. This limited professional experience forces the teacher to reflect on the use of games, on how to integrate them into class work, and on how to enhance the development of learning based on them. Our objective is to analyse a set of game scenarios and study aspects that characterise each of them, relating these characteristics to aspects of the professional knowledge to teach with technology. The study adopts an interpretative and qualitative methodology that seeks to understand the relationship between teachers' choices and their professional knowledge. The main findings suggest that the different characteristics of the game scenarios imply the creation of different working environments in the classroom; enhance the emergence of different student difficulties, requiring different ways to support their work; allowing/promoting different conceptual approaches; and the work with different representations. These differences between the game scenarios point to different emphases on the teaching and learning knowledge and the chemistry knowledge, suggesting different mobilizations of the teacher's professional knowledge.

Fernandes, Cláudio A., Alexei Yu. Karlovich, and Yuri I. Karlovich. "Banach algebras of Fourier multipliers equivalent at infinity to nice Fourier multipliers." Banach Journal of Mathematical Analysis. 15 (2021): 29.Website
Fernandes, Cláudio A., Alexei Yu. Karlovich, and Yuri I. Karlovich. "Calkin images of Fourier convolution operators with slowly oscillating symbols." Operator Theory, Functional Analysis and Applications. Operator Theory: Advances and Applications, vol 282. Basel: Birkhäuser Basel, 2021. 193-218.
Botelho, M. C., and H. Rocha Conceptualizações do conhecimento do professor para a integração da tecnologia no ensino da matemática. XVI Congresso Internacional Galego-Portugués de Psicopedagogia. Braga, Portugal, 2021. Abstract

The potential of technology for teaching and learning mathematics has been widely recognized. However, research has shown that the integration of technology into teaching practice has proved to be difficult, with teachers' knowledge and professional development being identified as a determinant factor. Although there tends to be a focus on the teacher's knowledge of technology, the literature suggests that attention needs to be given to how to integrate technology into teaching practice, thereby involving other types of knowledge. This awareness has led several authors, inspired by Shulman's work, to develop models or conceptualizations of the knowledge required for effective integration of technology.
This study is based on a literature review of the research conducted on the models TPACK - Technological Pedagogical and Content Knowledge, KTMT - Knowledge for Teaching Mathematics with Technology, and PTK/MPTK - Mathematical Pedagogical Technology Knowledge and aims to carry out an analysis of the similarities and differences between the models considered. The main conclusions reached suggest the existence of a common basis for the models considered, but also point to several differences between them, with some highlighting the role of technology and its impact on the teaching and learning process, while others aim to integrate into the model elements based on research on technology or theories related to technology integration, such as instrumental genesis.

Batista, Arnaldo G., Ricardo Cebola, Filipa Esgalhado, Sara Russo, Catarina Palma R. dos Reis, Fátima Serrano, Valentina Vassilenko, and Manuel Ortigueira. "The contractiongram: A method for the visualization of uterine contraction evolution using the electrohysterogram." Biomedical Signal Processing and Control. 67 (2021).
Marques, M. I. F., and O. Mateus Dinosaur tracksites from Portugal, focused on the carbonated platform of North and Central Lusitanian Basin. 3rd Palaeontological Virtual Congress, .Book of Abstracts. ISBN 978-84-09-36657-6, 2021. Abstractmarques_mateus_2021_pvc3_tracks.pdf

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Filipe, Luís, and K. T. Petrova. "Direct esterification of sucrose: novel lead-compounds against cancer." Annals of Medicine. 53:sup1 (2021): 28-29. DOI: 10.1080/07853890.2021.1896911.
Secci, Lorenzo, Massimo Lapi, Emanuele Teoni, Antonio Pinho Ramos, and Maurizio Orlando. "Eccentric punching strength of continuous flat slabs—Analysis of different experimental setups." Structural Concrete. n/a (2021). AbstractWebsite

Abstract This paper analyses the performance of the experimental setups to assess the punching strength of slab-column connections in continuous flat slabs under vertical and horizontal loading. In the last years, several experimental campaigns have been performed to investigate the punching strength of slab-column connections, but most of the experimental tests concerned isolated slab-column connections. Among the few setups aimed at reproducing the eccentric punching failure in continuous flat slabs, the setup developed at the NOVA School of Science and Technology in Lisbon is considered in this paper. The performance of the Lisbon setup is assessed through nonlinear finite element analyses, calibrated on experimental data, by comparison with numerical results of a theoretical continuous setup. Then, the performance of the isolated setups, used in many researches and at the base of some international codes, is also evaluated through the same finite element model. Numerical analyses highlight that the setup developed in Lisbon could provide reliable ultimate rotations of continuous flat slab connections, but it underestimates the punching strength. Despite isolated setups lead to similar results when compared with the Lisbon setup, the latter seems to provide a better representation of a continuous slab-column connection. The numerical analyses presented in this paper have been performed assuming monotonic lateral loading.