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2014
Hendrickx, Christophe, Ricardo Araújo, and Octávio Mateus. "The nonavian theropod quadrate II: systematic usefulness, major trends and cladistic and phylogenetic morphometrics analyses." PeerJ PrePrints. 2 (2014): e380v2. AbstractWebsite

The skull-bone quadrate in nonavian theropods is very diverse morphologically alongside the disparity of the group as a whole. However this disparity has been underestimated for taxonomic purposes. In order to evaluate the phylogenetic potential and investigate the evolutionary transformations of the quadrate, we conducted a Catalano-Goloboff phylogenetic morphometric analysis as well as a cladistic analysis using 98 discrete quadrate related characters. The cladistic analysis provides a fully resolved tree mirroring to some degree the classification of nonavian theropods. The quadrate morphology by its own provides a wealth of data with strong phylogenetic signal and allows inference of major trends in the evolution of this bone. Important synapomorphies include: for Abelisauroidea, a lateral ramus extending to the ectocondyle; for Tetanurae, the absence of the lateral process; for Spinosauridae, a medial curvature of the ventral part of the pterygoid ramus occurring just above the mandibular articulation; for Avetheropoda, an anterior margin of the pterygoid flange formed by a roughly parabolic margin; and for Tyrannosauroidea, a semi-oval pterygoid flange shape in medial view. The Catalano-Goloboff phylogenetic morphometric analysis reveals two main morphotypes of the mandibular articulation of the quadrate linked to function. The first morphotype, characterized by an anteroposteriorly broad mandibular articulation with two ovoid/subcircular condyles roughly subequal in size, is found in Ceratosauria, Tyrannosauroidea and Oviraptorosauria. This morphotype allows a very weak displacement of the mandible laterally. The second morphotype is characterized by an elongate and anteroposteriorly narrow mandibular articulation and a long and parabolic/sigmoid ectocondyle. Present in Megalosauroidea, Carcharodontosauridae and Dromaeosauridae, this morphotype permits the lower jaw rami to be displaced laterally when the mouth opened.

Biscaia, Hugo C., Rui Micaelo, João Teixeira, and Carlos Chastre. "Numerical analysis of FRP anchorage zones with variable width." Composites Part B: Engineering. 67 (2014): 410-426. AbstractWebsite

The use of Fibre Reinforced Polymers (FRP) has recently become widespread in the construction industry. However, some drawbacks related to premature debonding of the FRP composites from the bonded substrates have been identified. One of the solutions proposed is the implementation of mechanical anchorage systems. Although some design guidelines have been developed, the actual knowledge continues to be rather limited. Thus, designers and researchers have not yet achieved any consensus on the efficiency of any particular anchor device in delaying or preventing the premature debonding failure mode that can occur in Externally Bonded Reinforcement (EBR) systems. This paper studies the debonding phenomenon of FRP anchoring systems with a linear variable width, with a numerical analysis based on the Distinct Element Method (DEM). Combined systems with constant and variable width are also discussed. The FRP-to-parent material interfaces are modelled with a rigid-linear softening bond–slip law. The numerical results showed that it is possible to attain the FRP rupture force with a variable width solution. This solution is particularly attractive when the bonded length is shorter than the effective bonded length because the strength of the interface can be highly incremented.

Franco, J., D. Martins, I. Catarino, and G. Bonfait. "Narrow gas gap in cryogenic heat switch." Applied Thermal Engineering. 70 (2014): 115-121. Abstract

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Marinheiro, J., O. Mateus, A. Alaoui, F. Amani, M. Nami, and C. Ribeiro. "New Quaternary fossil sites from the Middle Atlas of Morocco." Comunicações Geológicas. 101, Especial I (2014): 485-488. Abstractmarinheiro_et_al_2014_new_quaternary_fossil_sites_from_the_middle_atlas_of_morocco.pdf

The paleontological richness of Morocco has been scientifically known since at least the early 20th century. The region of the Middle Atlas, more specifically the Boulemane area, has been however only sparsely studied since the 1960s when it provided vertebrate fossils from the Middle Jurassic. In September 2013, a Moroccan-Portuguese expedition to the village of Taghrout, Boulemane, made excavations in a Pleistocene fossil site that once was a small high-altitude sedimentary basin, uncharted in previous geological maps. The excavations yielded bone material from large mammals, the most common findings are elephants ascribed to Elephas, but artiodactyls, turtles, and in-situ Acheulean tools were also collected. This represents a new and important paleontological and archeological site. In addition to the discoveries of Taghrout, the expedition also retrieved Quaternary vertebrate material from a nearby cave and found new Jurassic localities, with arcosaur bones and dinosaur footprints, in El Mers.

Varandas, J. N., A. Paixão, E. Fortunato, P. Holscher, and R. Calçada. "Non-linear Elastic Behaviour of Unbound Aggregates in FEM representing Railway Transition Zones." Proceedings of the Second International Conference on Railway Technology: Research, Development and Maintenance. Ajaccio, France: Civil-Comp Press, 2014.
Varandas, J. N., A. Paixão, E. Fortunato, P. Hölscher, and R. Calçada. "Numerical Modelling of Railway Bridge Approaches: Influence of Soil Non-Linearity." International Journal of Railway Technology. 3.4 (2014): 73-95.
Gaspar, D., S. N. Fernandes, AG De Oliveira, J. G. Fernandes, P. Grey, R. V. Pontes, L. Pereira, R. Martins, M. H. Godinho, and E. Fortunato. "Nanocrystalline cellulose applied simultaneously as the gate dielectric and the substrate in flexible field effect transistors." Nanotechnology. 25.9 (2014): 094008. Abstract
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Palma, Angelina S., Ten Feizi, Robert A. Childs, Wengang Chai, and Yan Liu. "The neoglycolipid (NGL)-based oligosaccharide microarray system poised to decipher the meta-glycome." Current Opinion in Chemical Biology. 18 (2014): 87-94. Abstract
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Araújo, R., M. J. Polcyn, J. Lindgren, LL Jacobs, AS Schulp, O. Mateus, A. O. Gon?alves, and M. - L. Morais. "New aristonectine elasmosaurid plesiosaur specimens from the Early Maastrichtian of Angola and comments on paedomorphism in plesiosaurs." Geologie en Mijnbouw/Netherlands Journal of Geosciences. 94 (2014): 93-108. Abstract
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Araújo, R., M. J. Polcyn, AS Schulp, O. Mateus, LL Jacobs, A. O. Gon?alves, and M. - L. Morais. "A new elasmosaurid from the early Maastrichtian of Angola and the implications of girdle morphology on swimming style in plesiosaurs." Geologie en Mijnbouw/Netherlands Journal of Geosciences. 94 (2014): 109-120. Abstract
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Pessoa, Joao Costa, Gisela Goncalves, Somnath Roy, Isabel Correia, Sameena Mehtab, Marino F. A. Santos, and Teresa Santos-Silva. "New insights on vanadium binding to human serum transferrin." Inorganica Chimica Acta. 420 (2014): 60-68. Abstract
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Marinheiro, J., O. Mateus, A. Alaoui, F. Amani, M. Nami, and C. Ribeiro. "New Quaternary fossil sites from the Middle Atlas of Morocco." Comunica\\c cões Geológicas. 101, Especial I (2014): 485-488. Abstract

The paleontological richness of Morocco has been scientifically known since at least the early 20th century. The region of the Middle Atlas, more specifically the Boulemane area, has been however only sparsely studied since the 1960s when it provided vertebrate fossils from the Middle Jurassic. In September 2013, a Moroccan-Portuguese expedition to the village of Taghrout, Boulemane, made excavations in a Pleistocene fossil site that once was a small high-altitude sedimentary basin, uncharted in previous geological maps. The excavations yielded bone material from large mammals, the most common findings are elephants ascribed to Elephas, but artiodactyls, turtles, and in-situ Acheulean tools were also collected. This represents a new and important paleontological and archeological site. In addition to the discoveries of Taghrout, the expedition also retrieved Quaternary vertebrate material from a nearby cave and found new Jurassic localities, with arcosaur bones and dinosaur footprints, in El Mers.

Marinheiro, J., O. Mateus, A. Alaoui, F. Amani, M. Nami, and C. Ribeiro. "New Quaternary fossil sites from the Middle Atlas of Morocco." Comunicações Geológicas. 101 (2014): 485-488. Abstract
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Marinheiro, J., O. Mateus, A. Alaoui, F. Amani, M. Nami, and C. Ribeiro. "New quaternary fossil sites from the middle atlas of morocco,Novas jazidas fossilíferas do Quaternário do Médio-Atlas de Marrocos." Comunicacoes Geologicas. 101 (2014): 485-488. Abstract
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Núñez, C., M. Diniz, A. A. Dos Santos, J. L. Capelo, and C. Lodeiro. "New rhodamine dimer probes for mercury detection via color changes and enhancement of the fluorescence emission: Fast recognition in cellulose supported devices." Dyes and Pigments. 101 (2014): 156-163. AbstractWebsite
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Coutinho, M. L., V. S. F. Muralha, J. Mirao, and JP Veiga. "Non-destructive characterization of oriental porcelain glazes and blue underglaze pigments using mu-EDXRF, mu-Raman and VP-SEM." Applied Physics a-Materials Science & Processing. 114 (2014): 695-703. Abstract
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Hendrickx, Christophe, Ricardo Araújo, and Octávio Mateus The nonavian theropod quadrate I: standardized terminology and overview of the anatomy, function and ontogeny. PeerJ PrePrints, 2014. Abstract
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Marques, Filipe J., and Carlos A. Coelho. "A note on the distribution of the linear combination of independent Gamma random variables." AIP Conference Proceedings. Vol. 1618. AIP, 2014. 527-530. Abstract
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2013
MB, Gawande, Rathi AK, Branco PS, Potewar TM, Velhinho A, Nogueira ID, Tolstogouzov A, Ghumman CAA, and Teodoro OMND. "Nano-MgO-ZrO2 Mixed Metal oxides: Extensive characterization by SIMS and application in the reduction of carbonyl compounds and in multicomponent reactions." 3 (2013): 3611-3617. Abstract
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Ana, Baptista, Soares Paula, Ferreira Isabel, and Borges João Paulo. "Nanofibers and Nanoparticles in Biomedical Applications." Bioengineered Nanomaterials. Ed. Ashutosh Tiwari Atul Tiwari. CRC Press, 2013. 93-123. Abstract
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Pauleta, S. R., S. Dell'acqua, and I. Moura. "Nitrous oxide reductase." Coordination Chemistry Reviews. 257 (2013): 332-349. AbstractWebsite

Nitrous oxide is a potent greenhouse gas, whose atmospheric concentration has been increasing since the introduction of the Haber Bosch process led to the widespread use of nitrogenous fertilizers. One of the pathways to its destruction is reduction to molecular nitrogen by the enzyme nitrous oxide reductase found in denitrifying bacteria. This enzyme catalyzes the last step of the denitrification pathway. It has two copper centers, a binuclear CuA center, similar to the one found in cytochrome c oxidase, and the CuZ center, a unique tetranuclear copper center now known to possess either one or two sulfide bridges. Nitrous oxide reductase has been isolated in different forms, depending on the oxidation state and molecular forms of its Cu centers. Recently, the structure of a purple form, which has both centers in the oxidized state, revealed that the CuZ center has the form [Cu4S2]. This review summarizes the biogenesis and regulation of nitrous oxide reductase, and the spectroscopic and kinetic properties of nitrous oxide reductase. The proposed activation and catalytic mechanism, as well as, electron transfer pathways are discussed in the light of the various structures of the CuZ center. (C) 2012 Published by Elsevier B.V.

Larrinaga, Pello, Carlos Chastre, José T. San-José, and Leire Garmendia. "Non-linear analytical model of composites based on basalt textile reinforced mortar under uniaxial tension." Composites Part B: Engineering. 55 (2013): 518-527. AbstractWebsite

The recent development of inorganic based composites as low-cost materials in reinforced concrete structural strengthening and precast thin-walled components, requires the creation of models that predict the mechanical behaviour of these materials. Textile Reinforced Mortar (TRM) shows complex stress–strain behaviour in tension derived from the heterogeneity of its constituent materials. This complexity is mainly caused by the formation of several cracks in the inorganic matrix. The multiple cracking leads to a decrease in structural stiffness. Due to the severe conditions of the serviceability limit state in structural elements, the prediction of the stress–strain curve is essential for design and calculation purposes. After checking other models, an empirical nonlinear approach, which is based on the crack control expression included in the Eurocode 2, is proposed in this paper. Following this scope, this paper presents an experimental campaign focused on 31 TRM specimens reinforced with four different reinforcing ratios. The results are analysed and satisfactorily contrasted with the presented non-linear approach.

Pimenta, Jorge, Aldino Viegas, João Sardinha, Ivo C. Martins, Eurico J. Cabrita, Carlos M. G. A. Fontes, Jose A. M. Prates, and Rosa M. L. N. Pereira. "NMR Solution Structure and SRP54M predicted interaction of the N-Terminal sequence (1-30) of the ovine Doppel protein." Peptides. 49 (2013): 32-40. AbstractWebsite

Prion protein (PrPC) biosynthesis involves a multi-step process that includes translation and post-translational modifications. While PrP has been widely investigated, for the homolog Doppel (Dpl), limited knowledge is available. In this study, we focused on a vital step of eukaryotic protein biosynthesis: targeting by the signal recognition particle (SRP). Taking the ovine Dpl (OvDpl(1-30)) peptide as a template, we studied its behavior in two different hydrophobic environments using CD and NMR spectroscopy. In both trifluoroethanol (TFE) and dihexanoyl-sn-glycero-3-phosphatidylcholine (DHPC), the OvDpl(1-30) peptide revealed to fold in an alpha-helical conformation with a well-defined central region extending from residue Cys8 until Ser22. The NMR structure was subsequently included in a computational docking complex with the conserved M-domain of SRP54 protein (SRP54M), and further compared with the N-terminal structures of mouse Dpl and bovine PrPC proteins. This allowed the determination of (i) common predicted N-terminal/SRP54M polar contacts (Asp331, Gln335, Glu365 and Lys432) and (ii) different N–C orientations between prion and Dpl peptides at the SRP54M hydrophobic groove, that are in agreement with each peptide electrostatic potential. Together, these findings provide new insights into the biosynthesis of prion-like proteins. Besides they also show the role of protein conformational switches in signalization toward the endoplasmic membrane, a key event of major significance in the cell cycle. They are thus of general applicability to the study of the biological function of prion-like as well as other proteins.

Biscaia, Hugo C., Carlos Chastre, and Manuel A. G. Silva. "Nonlinear numerical analysis of the debonding failure process of FRP-to-concrete interfaces." Composites Part B: Engineering. 50 (2013): 210-223. AbstractWebsite

The paper analyses numerical solutions for the process leading to debonding failure of fiber reinforced polymers (FRP)-to-concrete interfaces in shear tests with the FRP plate subjected to a tensile load at one end. Any realistic local nonlinear bond-slip law can be used in the numerical analysis proposed in the present study. However, only a Popovics’ type expression is employed in the numerical process due to its use in different studies found in the literature. Effective bond length (Leff) is discussed and an expression depending on the Popovics’ constant (nP) is proposed to calculate it. Assuming a fracture in pure Mode II, the debonding process is analyzed in detail and distributions of bond stresses and strains in the FRP plate along the interface are presented. The load-displacement behaviour is also presented and the influence of the local bond-slip law on the debonding process is discussed.

N.J.Ford, M. L. Morgado, and M. Rebelo Nonpolynomial approximation of solutions to delay fractional differential equations. Proceedings of the 13th International Conference on Computational and Mathematical Methods in Science and Engineering, CMMSE2013. Almería , Spain.: ISBN:978-84-616-2723-3, 2013.