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2015
Rocha, André Dion{\'ısio, Ricardo Silva Peres, Luis Flores, and Jose Barata. "A multiagent based knowledge extraction framework to support plug and produce capabilities in manufacturing monitoring systems." Mechatronics and its Applications (ISMA), 2015 10th International Symposium on. IEEE, 2015. 1-5. Abstract
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Echeverria, Coro, Paula Soares, Ana Robalo, Laura Pereira, Carlos M. M. Novo, Isabel Ferreira, and João Paulo Borges. "One-pot synthesis of dual-stimuli responsive hybrid PNIPAAm-chitosan microgels." Materials & Design. 86 (2015): 745-751. Abstract
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Rodrigues, J.a, Mata Pimentel Nunes Martins Fortunato Neves Monteiro Costa D. a A. b. "One-step synthesis of ZnO decorated CNT buckypaper composites and their optical and electrical properties." Materials Science and Engineering B: Solid-State Materials for Advanced Technology. 195 (2015): 38-44. AbstractWebsite

ZnO/CNT composites were prepared using ZnO nanoparticles and tetrapods synthesized by the Laser Assisted Flow Deposition method. The co-operative behaviour between these two materials may give rise to the production of advanced functional materials with a wide range of applications in electronics and optoelectronics. Despite some degree of aggregation in the case of the nanoparticles, scanning electron microscopy images evidence that the produced ZnO structures are well dispersed in the CNT buckypapers. Independent of the ZnO morphology the samples resistivity was shown to be of the order of ∼10-1 Ω cm while in the case of the electron mobility, the composite with tetrapods reveals a lower value than the ones obtained for the remaining samples. Well-structured ZnO luminescence was observed mainly in ultraviolet highlighting the high optical quality of the produced structures. The temperature dependence of the luminescence reveals a distinct trend for the composites with ZnO tetrapods and ZnO nanoparticles. © 2015 Elsevier B.V.

Xing, L., M. G. Lockley, D. Marty, J. Zhang, Y. Wang, H. Klein, R. T. McCrea, L. G. Buckley, M. Belvedere, O. Mateus, G. D. Gierli?ski, L. Piñuela, W. S. Persons, F. Wang, H. Ran, H. Dai, and X. Xie. "An ornithopod-dominated tracksite from the lower Cretaceous Jiaguan Formation (Barremian-Albian) of Qijiang, South-Central China: New discoveries, ichnotaxonomy, preservation and palaeoecology." PLoS ONE. 10 (2015). Abstract
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d Ruivo, C.R.a b, Vaz D. C. c. "Prediction of the heat gain of external walls: An innovative approach for full-featured excitations based on the simplified method of Mackey-and-Wright." Applied Energy. 155 (2015): 378-392. AbstractWebsite

Nowadays, simulation tools are available for calculating the thermal loads of multiple rooms of buildings, for given inputs. However, due to inaccuracies or uncertainties in some of the input data (e.g., thermal properties, air infiltrations flow rates, building occupancy), the evaluated thermal load may represent no more than just an estimate of the actual thermal load of the spaces. Accordingly, in certain practical situations, simplified methods may offer a more reasonable trade-off between effort and results accuracy than advanced software. Hence, despite the advances in computing power over the last decades, simplified methods for the evaluation of thermal loads are still of great interest nowadays, for both the practicing engineer and the graduating student, since these can be readily implemented or developed in common computational-tools, like a spreadsheet.The method of Mackey and Wright (M&W) is a simplified method that upon values of the decrement factor and time lag of a wall (or roof) estimates the instantaneous rate of heat transfer through its indoor surface. It assumes cyclic behaviour and shows good accuracy when the excitation and response have matching shapes, but it involves non negligible error otherwise, for example, in the case of walls of high thermal inertia.The aim of this study is to develop a simplified procedure that considerably improves the accuracy of the M&W method, particularly for excitations that noticeably depart from the sinusoidal shape, while not introducing a need for an excessive volume of data or complexity in the production of results.In the first simplified procedure discussed in the paper, a full-featured excitation is decomposed into a Fourier series and then the wall's thermal behaviour is reconstructed from the application of the M&W method to each of the N sinusoidal components. Even though this established approach can lead to the most accurate results, given a sufficiently high N, it requires the knowledge of the decrement factor and time lag associated to each component of the Fourier series, which can represent a considerable amount of data.The chief result of the research though is a novel procedure based on a parameter, γ, that weigh-averages the approximate solution obtained by considering a single term Fourier decomposition of the excitation and the solution by considering the actual excitation. The procedure is more accurate than the original M&W method and will be of interest to researchers with the means of generating values of γ for the walls which the end users of their research are interested in. It provides promising results for walls ranging from massive to negligible mass. It has been noticed that while using the same values of γ that had been optimized for the wall facing east, acceptable results are also obtained when altered external excitations are imposed, namely due to intermittency of the direct solar radiation or due to a distinct value of the external heat transfer coefficient. © 2015 Elsevier Ltd.

Mano, Francisca, Ivo M. Aroso, Susana Barreiros, João Paulo Borges, Rui L. Reis, Ana Rita C. Duarte, and Alexandre Paiva. "Production of poly (vinyl alcohol)(PVA) fibers with encapsulated natural deep eutectic solvent (NADES) using electrospinning." ACS Sustainable Chemistry & Engineering. 3 (2015): 2504-2509. Abstract
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Guerra-Guimaraes, Leonor, Rita Tenente, Carla Pinheiro, Ines Chaves, Maria Ceu do Silva, Fernando M. H. Cardoso, Sebastien Planchon, Danielle R. Barros, Jenny Renaut, and Candido P. Ricardo. "Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix." Frontiers in Plant Science. 6 (2015). AbstractWebsite
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Guerra-Guimaraes, Leonor, Rita Tenente, Carla Pinheiro, Ines Chaves, Maria Ceu do Silva, Fernando M. H. Cardoso, Sebastien Planchon, Danielle R. Barros, Jenny Renaut, and Candido P. Ricardo. "Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix." Frontiers in Plant Science. 6 (2015). Abstract
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Zivy, Michel, Stefanie Wienkoop, Jenny Renaut, Carla Pinheiro, Estelle Goulas, and Sebastien Carpentier. "The quest for tolerant varieties: the importance of integrating "omics" techniques to phenotyping." Frontiers in Plant Science. 6 (2015). Abstract
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Echeverria, Coro, Pedro L. Almeida, Gabriel Feio, João L. Figueirinhas, Alejandro D. Rey, and Maria H. Godinho. "Rheo-NMR study of water-based cellulose liquid crystal system at high shear rates." Polymer. 65 (2015): 18-25. Abstract
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Ramos, Luís P., Pedro Mota, and João T. Mexia. "Sample Partitioning Estimation for Ergodic Diffusions." Communications in Statistics - Simulation and Computation. 44 (2015): 105-117. AbstractWebsite

In this article, we present a new technique to obtain estimators for parameters of ergodic processes. When a diffusion is ergodic its transition density converges to the invariant density Durett (1996). This convergence enabled us to introduce a sample partitioning technique that gives, in each subsample, observations that can be treated as independent and identically distributed. Within this framework, is possible the construction of estimators like maximum likelihood estimators or others.

Coelho, Catarina, Alessandro Foti, Tobias Hartmann, Teresa Santos-Silva, Silke Leimkuehler, and Maria Joao Romao. "Structural insights into xenobiotic and inhibitor binding to human aldehyde oxidase." Nature Chemical Biology. 11 (2015): 779-+. Abstract
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Coelho, C., A. Foti, T. Hartmann, T. Santos-Silva, S. Leimkühler, and MJ Romão. "Structural insights into xenobiotic and inhibitor binding to human aldehyde oxidase." Nature Chemical Biology. 11 (2015): 779-783. Abstract
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Silva, Teresa Pereira, João Pedro Veiga, Daniel PS Oliveira, Maria João Batista, Diogo Rosa, and Ondina M. Figueiredo. "A utilização da radiação de sincrotrão no estudo de materiais geológicos; breve abordagem sobre experiências recentes de um grupo de utilizadores." Geonovas (2015). Abstract
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Silva, Tiago A. N., and Maria A. R. Loja Virtual Testing of the Hygrothermal Residual Stresses in Functionally Graded Composites: Modelling and Optimization.. Eds. M. T. Restivo, A. Cardoso, and A. M. Lopes. Online Experimentation: Emergent Technologies and IoT. IFSA Publishing, 2015. Abstract
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Barros, Alexandre A., A. N. A. Rita, A. R. C. Duarte, Ricardo A. Pires, Belém Sampaio-Marques, Paula Ludovico, Estevão Lima, João F. Mano, and Rui L. Reis. "{Bioresorbable ureteral stents from natural origin polymers}." Journal of Biomedical Materials Research - Part B Applied Biomaterials. 103 (2015): 608-617. Abstract

In this work, stents were produced from natural origin polysaccharides. Alginate, gellan gum, and a blend of these with gelatin were used to produce hollow tube (stents) following a combination of templated gelation and critical point carbon dioxide drying. Morphological analysis of the surface of the stents was carried out by scanning electron microscopy. Indwelling time, encrustation, and stability of the stents in artificial urine solution was carried out up to 60 days of immersion. In vitro studies carried out with simulated urine demonstrated that the tubes present a high fluid uptake ability, about 1000{%}. Despite this, the materials are able to maintain their shape and do not present an extensive swelling behavior. The bioresorption profile was observed to be highly dependent on the composition of the stent and it can be tuned. Complete dissolution of the materials may occur between 14 and 60 days. Additionally, no encrustation was observed within the tested timeframe. The ability to resist bacterial adherence was evaluated with Gram-positive Staphylococcus aureus and two Gram-negatives Escherichia coli DH5 alpha and Klebsiella oxytoca. For K. oxytoca, no differences were observed in comparison with a commercial stent (Biosoft((R)) duo, Porges), although, for S. aureus all tested compositions had a higher inhibition of bacterial adhesion compared to the commercial stents. In case of E. coli, the addition of gelatin to the formulations reduced the bacterial adhesion in a highly significant manner compared to the commercial stents. The stents produced by the developed technology fulfill the requirements for ureteral stents and will contribute in the development of biocompatible and bioresorbable urinary stents.

Aroso, Ivo M., Ana Rita C. Duarte, Ricardo R. Pires, João F. Mano, and Rui L. Reis. "{Cork processing with supercritical carbon dioxide: Impregnation and sorption studies}." Journal of Supercritical Fluids. 104 (2015): 251-258. AbstractWebsite

Abstract The present study relates to the use of supercritical carbon dioxide (SCCO{\textless}inf{\textgreater}2{\textless}/inf{\textgreater}) to modify the properties of cork by incorporation of new molecules. The impact of SCCO{\textless}inf{\textgreater}2{\textless}/inf{\textgreater}processing on the morphology and on the mechanical properties was found to be negligible.The impregnation of disperse blue 14 (blue dye) on cubic shaped cork samples of 5 mm occurs progressively,is dependent of the processing conditions and of the presence of lenticels and growth rings. The impregnation of the samples bulk was achieved with processing at 10 MPa and 313 K for 16 h. The solubility and sorption of SCCO{\textless}inf{\textgreater}2{\textless}/inf{\textgreater} in the cork matrix was measured using circular discs and the diffusion coefficients calculated to be on the order of 10{\textless}sup{\textgreater}-8{\textless}/sup{\textgreater} cm{\textless}sup{\textgreater}2{\textless}/sup{\textgreater}/s, the same order as for wood materials. This work demonstrates the feasibility of supercritical fluid technology to impart new features to cork, which may lead to innovative architectural, outdoor and industrial applications.

Aroso, I. M., R. Craveiro, Â. Rocha, M. Dionísio, S. Barreiros, R. L. Reis, A. Paiva, and A. R. C. Duarte. "{Design of controlled release systems for THEDES - Therapeutic deep eutectic solvents, using supercritical fluid technology}." International Journal of Pharmaceutics. 492 (2015). Abstract

© 2015 Elsevier B.V. Abstract Deep eutectic solvents (DES) can be formed by bioactive compounds or pharmaceutical ingredients. A therapeutic DES (THEDES) based on ibuprofen, a non-steroidal anti-inflammatory drug (NSAID), and menthol was synthesized and its thermal behavior was analyzed by differential scanning calorimetry (DSC). A controlled drug delivery system was developed by impregnating a starch:poly-Ï$μ$-caprolactone polymeric blend (SPCL 30:70) with the menthol:ibuprofen THEDES in different ratios (10 and 20 wt{%}), after supercritical fluid sintering at 20 MPa and 50 °C. The morphological characterization of SPCL matrices impregnated with THEDES was performed by scanning electron microscopy (SEM) and micro-computed tomography (micro-CT). Drug release studies were carried out in a phosphate buffered saline. The results obtained provide important clues for the development of carriers for the sustainable delivery of bioactive compounds.

Barros, A. A., C. Oliveira, R. L. Reis, E. Lima, and A. R. C. Duarte. "{Ketoprofen-eluting biodegradable ureteral stents by CO{\textless}inf{\textgreater}2{\textless}/inf{\textgreater}impregnation: In vitro study}." International Journal of Pharmaceutics. 495 (2015). Abstract

© 2015 Elsevier B.V. Ureteral stents are indispensable tools in urologic practice. The main complications associated with ureteral stents are dislocation, infection, pain and encrustation. Biodegradable ureteral stents are one of the most attractive designs with the potential to eliminate several complications associated with the stenting procedure. In this work we hypothesize the impregnation of ketoprofen, by CO 2 -impregnation in a patented biodegradable ureteral stent previously developed in our group. The biodegradable ureteral stents with each formulation: alginate-based, gellan gum-based were impregnated with ketoprofen and the impregnation conditions tested were 100 bar, 2 h and three different temperatures (35 °C, 40°C and 50°C). The impregnation was confirmed by FTIR and DSC demonstrated the amorphization of the drug upon impregnation. The in vitro elution profile in artificial urine solution (AUS) during degradation of a biodegradable ureteral stent loaded with ketoprofen was evaluated. According to the kinetics results these systems have shown to be very promising for the release ketoprofen in the first 72 h, which is the necessary time for anti-inflammatory delivery after the surgical procedure. The in vitro release studied revealed an influence of the temperature on the impregnation yield, with a higher impregnation yield at 40°C. Higher yields were also obtained for gellan gum-based stents. The non-cytotoxicity characteristic of the developed ketoprofen-eluting biodegradable ureteral stents was evaluated in L929 cell line by MTS assay which demonstrated the feasibility of this product as a medical device.

Quraishi, Sakeena, Marta Martins, Alexandre A. Barros, Pavel Gurikov, S. P. Raman, Irina Smirnova, Ana Rita C. Duarte, and Rui L. Reis. "{Novel non-cytotoxic alginate–lignin hybrid aerogels as scaffolds for tissue engineering}." Journal of Supercritical Fluids. 105 (2015): 1-8. AbstractWebsite

This paper presents a novel approach toward the production of hybrid alginate–lignin aerogels. The key idea of the approach is to employ pressurized carbon dioxide for gelation. Exposure of alginate and lignin aqueous alkali solution containing calcium carbonate to CO2at 4.5 MPa resulted in a hydrogel formation. Various lignin and CaCO3concentrations were studied. Stable hydrogels could be formed up to 2:1 (w/w) alginate-to-lignin ratio (1.5 wt{%} overall biopolymer concentration). Upon substitution of water with ethanol, gels were dried in supercritical CO2to produce aerogels. Aerogels with bulk density in the range 0.03–0.07 g/cm3, surface area up to 564 m2/g and pore volume up to 7.2 cm3/g were obtained. To introduce macroporosity, the CO2induced gelation was supplemented with rapid depressurization (foaming process). Macroporosity up to 31.3 ± 1.9{%} with interconnectivity up to 33.2 ± 8.3{%} could be achieved at depressurization rate of 3 MPa/min as assessed by micro-CT. Young's modulus of alginate–lignin aerogels was measured in both dry and wet states. Cell studies revealed that alginate–lignin aerogels are non-cytotoxic and feature good cell adhesion making them attractive candidates for a wide range of applications including tissue engineering and regenerative medicine.

Martins, Marta, Alexandre A. Barros, Sakeena Quraishi, Pavel Gurikov, S. P. Raman, Irina Smirnova, Ana Rita C. Duarte, and Rui L. Reis. "{Preparation of macroporous alginate-based aerogels for biomedical applications}." Journal of Supercritical Fluids (2015). AbstractWebsite

Aerogels are a special class of ultra-light porous materials with growing interest in biomedical applications due to their open pore structure and high surface area. However, they usually lack macroporosity, while mesoporosity is typically high. In this work, carbon dioxide induced gelation followed by expansion of the dissolved CO{\textless}inf{\textgreater}2{\textless}/inf{\textgreater} was performed to produce hybrid calcium-crosslinked alginate-starch hydrogels with dual meso- and macroporosity. The hydrogels were subjected to solvent exchange and supercritical drying to obtain aerogels. Significant increase in macroporosity from 2 to 25{%} was achieved by increasing expansion rate from 0.1 to 30 bar/min with retaining mesoporosity (BET surface and BJH pore volume in the range 183-544m{\textless}sup{\textgreater}2{\textless}/sup{\textgreater}/g and 2.0-6.8cm{\textless}sup{\textgreater}3{\textless}/sup{\textgreater}/g, respectively). In vitro bioactivity studies showed that the alginate-starch aerogels are bioactive, i.e. they form hydroxyapatite crystals when immersed in a simulated body fluid solution. Bioactivity is attributed to the presence of calcium in the matrix. The assessment of the biological performance showed that the aerogels do not present a cytotoxic effect and the cells are able to colonize and grow on their surface. Results presented in this work provide a good indication of the potential of the alginate-starch aerogels in biomedical applications, particularly for bone regeneration.

Barros, Alexandre A., Ivo M. Aroso, Tiago H. Silva, João F. Mano, Ana Rita C. Duarte, and Rui L. Reis. "{Water and carbon dioxide: Green solvents for the extraction of collagen/gelatin from marine sponges}." ACS Sustainable Chemistry and Engineering. 3 (2015): 254-260. Abstract

Marine sponges are extremely rich in natural products and are considered a promising biological resource. The major objective of this work is to couple a green extraction process with a natural origin raw material to obtain sponge origin collagen/gelatin for biomedical applications. Marine sponge collagen has unique physicochemical properties, but its application is hindered by the lack of availability due to inefficient extraction methodologies. Traditional extraction methods are time consuming as they involve several operating steps and large amounts of solvents. In this work, we propose a new extraction methodology under mild operating conditions in which water is acidified with carbon dioxide (CO2) to promote the extraction of collagen/gelatin from different marine sponge species. An extraction yield of approximately 50{%} of collagen/gelatin was achieved. The results of Fourier transformed infrared spectroscopy (FTIR), circular dichroism (CD), and differential scanning calorimetry (DSC) spectra suggest a mixture of collagen/gelatin with high purity, and the analysis of the amino acid composition has shown similarities with collagen from other marine sources. Additionally, in vitro cytotoxicity studies did not demonstrate any toxicity effects for three of the extracts.

2014
Fliedel, Christophe, Vitor Rosa, Carla I. M. Santos, Pablo J. Gonzalez, Rui M. Almeida, Clara S. B. Gomes, Pedro T. Gomes, Amelia M. N. D. A. Lemos, Gabriel Aullon, Richard Welter, and Teresa Aviles. "{Copper(II) complexes of bis(aryl-imino)acenaphthene ligands: synthesis, structure, DFT studies and evaluation in reverse ATRP of styrene}." {DALTON TRANSACTIONS}. {43} (2014): {13041-13054}. Abstract

{Two new Ar-BIAN Cu(II) complexes (where Ar-BIAN = bis(aryl-imino)acenaphthene) of formulations {[}CuCl2(Mes-BIAN)] (1) (Mes = 2,4,6-Me3C6H2) and {[}CuCl2(Dipp-BIAN)] (2) (Dipp = 2,6-iPr(2)C(6)H(3)) were synthesised by direct reaction of CuCl2 suspended in dichloromethane with the respective ligands Mes-BIAN (L1) and Dipp-BIAN (L2), dissolved in dichloromethane, under an argon atmosphere. Attempts to obtain these compounds by solubilising CuCl2 in methanol and adding a dichloromethane solution of the corresponding ligand, under aerobic conditions, gave also compound 1, but, in the case of L2, the Cu(I) dimer {[}CuCl(Dipp-BIAN)](2) (3) was obtained instead of compound 2. The compounds were fully characterised by elemental analyses, MALDI-TOF mass spectrometry, FT-IR, H-1 NMR and EPR spectroscopic techniques. The solid-state molecular structures of compounds 1-3 were determined by single crystal X-ray diffraction, showing the expected chelation of the Ar-BIAN ligands and two chloride ligands completing the coordination sphere of the Cu(11) centre. In the case of the complex 1, an intermediate coordination geometry around the Cu(II) centre, between square planar and tetrahedral, was revealed, while the complex 2 showed an almost square planar geometry. The structural differences and evaluation of energetic changes were rationalised by DFT calculations. Analysis of the electrochemical behaviour of complexes 1-3 was performed by cyclic voltammetry and the experimental redox potentials for Cu(II)/Cu(I) pairs have been compared with theoretical values calculated by DFT in the gas phase and in dichloromethane and methanol solutions. The complex 1 exhibited good activity in the reverse atom transfer radical polymerisation (ATRP) of styrene.}

Rodrigues, Paula, Cristiana J. Silva, and Delfim F. M. Torres. "Cost-Effectiveness Analysis of Optimal Control Measures for Tuberculosis." BULLETIN OF MATHEMATICAL BIOLOGY. 76 (2014): 2627-2645. Abstract

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Lopes, Joao Sollari, Paula Rodrigues, Suani T. R. Pinho, Roberto F. S. Andrade, Raquel Duarte, and Gabriela M. M. Gomes. "Interpreting measures of tuberculosis transmission: a case study on the Portuguese population." BMC INFECTIOUS DISEASES. 14 (2014). Abstract

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