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2013
a. a. Ghumman, C., M. C. a. Moutinho, A. Santos, A. Tolstogouzov, and O. M. N. D. Teodoro. "{TOF-SIMS VG Ionex IX23LS: upgrade and application for the urinary stones analysis}." Surface and Interface Analysis. 45 (2013): 532-536. AbstractWebsite

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Duarte, Ana Rita C., Vitor E. Santo, Anabela Alves, Simone S. Silva, Joana Moreira-Silva, Tiago H. Silva, Alexandra P. Marques, Rui A. Sousa, Manuela E. Gomes, João F. Mano, and Rui L. Reis. "{Unleashing the potential of supercritical fluids for polymer processing in tissue engineering and regenerative medicine}." Journal of Supercritical Fluids. 79 (2013): 177-185. AbstractWebsite

One of the major scientific challenges that tissue engineering and regenerative medicine (TERM) faces to move from benchtop to bedside regards biomaterials development, despite the latest advances in polymer processing technologies. A variety of scaffolds processing techniques have been developed and include solvent casting and particles leaching, compression molding and particle leaching, thermally induced phase separation, rapid prototyping, among others. Supercritical fluids appear as an interesting alternative to the conventional methods for processing biopolymers as they do not require the use of large amounts of organic solvents and the processes can be conducted at mild temperatures. However, this processing technique has only recently started to receive more attention from researchers. Different processing methods based on the use of supercritical carbon dioxide have been proposed for the creation of novel architectures based on natural and synthetic polymers and these will be unleashed in this paper. © 2013 Elsevier B.V. All rights reserved.

Duarte, Ana Rita C., Vitor E. Santo, Anabela Alves, Simone S. Silva, Joana Moreira-Silva, Tiago H. Silva, Alexandra P. Marques, Rui A. Sousa, Manuela E. Gomes, João F. Mano, and Rui L. Reis. "{Unleashing the potential of supercritical fluids for polymer processing in tissue engineering and regenerative medicine}." Journal of Supercritical Fluids. 79 (2013): 177-185. AbstractWebsite

One of the major scientific challenges that tissue engineering and regenerative medicine (TERM) faces to move from benchtop to bedside regards biomaterials development, despite the latest advances in polymer processing technologies. A variety of scaffolds processing techniques have been developed and include solvent casting and particles leaching, compression molding and particle leaching, thermally induced phase separation, rapid prototyping, among others. Supercritical fluids appear as an interesting alternative to the conventional methods for processing biopolymers as they do not require the use of large amounts of organic solvents and the processes can be conducted at mild temperatures. However, this processing technique has only recently started to receive more attention from researchers. Different processing methods based on the use of supercritical carbon dioxide have been proposed for the creation of novel architectures based on natural and synthetic polymers and these will be unleashed in this paper. © 2013 Elsevier B.V. All rights reserved.

2012
Maiti, Biplab K., Teresa Aviles, Manolis Matzapetakis, Isabel Moura, Sofia R. Pauleta, and Jose J. G. Moura. "{Synthesis of {[}MoS4](2-)-M (M=Cu and Cd) Clusters: Potential NMR Spectroscopic Structural Probes for the Orange Protein}." {EUROPEAN JOURNAL OF INORGANIC CHEMISTRY} (2012): {4159-4166}. Abstract

{Two synthetic strategies of tetrathiomolybdate-metal clusters with the potential to be used as NMR structural probes for the location of the metal cofactor in the orange protein (ORP) are described. The first strategy is based on the substitution reaction in which small organic ligands bind directly to the metal centre in a molybdenumcopper hetero-dinuclear cluster. Interaction between {[}PPh4]2{[}MoS4CuCl] and either aliphatic {[}beta-mercaptoethanol (b-me)] or aromatic {[}o-aminobenzenethiol (abt)] thiols in the presence of a strong base resulted in the formation of {[}Ph4P]2{[}S2MoS2Cu(b-me)] (1a) and {[}Et4N]2{[}S2MoS2Cu(abt)]center dot H2O center dot 0.25DMF (1b), which can be used to obtain intermolecular NOEs. The compound 1a readily hydrolyzed to {[}Ph4P]2{[}OSMoS2Cu(b-me)] (1ahydro) in contact with a protic solvent. The second strategy consisted of the incorporation of cadmium into tetrathiomolybdate ({[}MoS4]2), which gives rise to the trinuclear cluster compound {[}PPh4]2{[}(MoS4)2Cd] (2). All clusters were characterized spectroscopically and their structure determined by X-ray diffraction. The NMR spectroscopic data are consistent with the formation of a complex with a 1:1 ratio of \{MoS4Cu\} and thiol. The 113Cd NMR chemical shift of compound 2 is consistent with the cadmium having a tetrahedral geometry and coordinated by four sulfur ligands. The tetraphenylphosphonium cation in compound 1a was replaced by a tetramethylammonium countercation originating in the water-soluble compound {[}Me4N-1a]. Solubility in aqueous buffers is a requirement for incorporating this cluster into apo-ORP. These compounds will be used to identify the exact location of the ORP heterometallic cluster using NMR methodologies.}

Vitor Rosa, Sara Realista, Ana Mourato, Luisa Maria Abrantes, Joao Henriques, Maria Jose Calhorda, Teresa Aviles, Michael G. B. Drew, and Vitor Felix. "{1,1 `-Bis(diphenylphosphino)ferrocene bridging two mono(cyclopentadienyl) cobalt moieties: Synthesis, structure, electrochemistry and DFT studies}." {JOURNAL OF ORGANOMETALLIC CHEMISTRY}. {712} (2012): {52-56}. Abstract

{Reaction of {[}Co(eta(5)-C5H5)(CO)(2)], 1, with 1,1'-bis(diphenylphosphino)ferrocene (dppf) yields the new trinuclear complex {[}Co(eta(5)-C5H5)(CO)](2)(mu-dppf), 2, which was structurally characterised by single crystal X-ray diffraction and showed two Co(eta(5)-C5H5)(CO) moieties covalently linked by a dppf bridge. Electrochemical studies in dichloromethane revealed that both Co(I) and Fe(II) in the precursors were oxidized to Co(II)/Co(III) and Fe(III), respectively. On the other hand, in 2 the two first oxidation waves were assigned to Co, the Fe(II) centre requiring a higher potential than in free dppf. DFT calculations showed that the HOMOs of 2 were localised in the Co fragments, owing to the destabilisation of the Co(eta(5)-C5H5)(CO) orbitals after binding dppf. (C) 2012 Elsevier B.V. All rights reserved.}

Maiti, B. K., T. Aviles, M. Matzapetakis, I. Moura, S. R. Pauleta, and JJG Moura. "Synthesis of MoS4 (2-)-M (M=Cu and Cd) Clusters: Potential NMR Spectroscopic Structural Probes for the Orange Protein." European Journal of Inorganic Chemistry (2012): 4159-4166. AbstractWebsite

Two synthetic strategies of tetrathiomolybdate-metal clusters with the potential to be used as NMR structural probes for the location of the metal cofactor in the orange protein (ORP) are described. The first strategy is based on the substitution reaction in which small organic ligands bind directly to the metal centre in a molybdenumcopper hetero-dinuclear cluster. Interaction between [PPh4]2[MoS4CuCl] and either aliphatic [beta-mercaptoethanol (b-me)] or aromatic [o-aminobenzenethiol (abt)] thiols in the presence of a strong base resulted in the formation of [Ph4P]2[S2MoS2Cu(b-me)] (1a) and [Et4N]2[S2MoS2Cu(abt)]center dot H2O center dot 0.25DMF (1b), which can be used to obtain intermolecular NOEs. The compound 1a readily hydrolyzed to [Ph4P]2[OSMoS2Cu(b-me)] (1ahydro) in contact with a protic solvent. The second strategy consisted of the incorporation of cadmium into tetrathiomolybdate ([MoS4]2), which gives rise to the trinuclear cluster compound [PPh4]2[(MoS4)2Cd] (2). All clusters were characterized spectroscopically and their structure determined by X-ray diffraction. The NMR spectroscopic data are consistent with the formation of a complex with a 1:1 ratio of {MoS4Cu} and thiol. The 113Cd NMR chemical shift of compound 2 is consistent with the cadmium having a tetrahedral geometry and coordinated by four sulfur ligands. The tetraphenylphosphonium cation in compound 1a was replaced by a tetramethylammonium countercation originating in the water-soluble compound [Me4N-1a]. Solubility in aqueous buffers is a requirement for incorporating this cluster into apo-ORP. These compounds will be used to identify the exact location of the ORP heterometallic cluster using NMR methodologies.

Monteiro, Regina C. C., Andreia A. S. Lopes, Maria M. A. Lima, Joao P. Veiga, Rui JC Silva, Carlos J. Dias, Erika J. R. Davim, and Maria H. V. Fernandes. "Sintering, Crystallization, and Dielectric Behavior of Barium Zinc Borosilicate GlassesuEffect of Barium Oxide Substitution for Zinc Oxide." Journal of the American Ceramic Society. 95.10 (2012): 3144-3150. Abstract
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Hadt, R. G., X. J. Xie, S. R. Pauleta, I. Moura, and E. I. Solomon. "Analysis of resonance Raman data on the blue copper site in pseudoazurin: Excited state pi and sigma charge transfer distortions and their relation to ground state reorganization energy." Journal of Inorganic Biochemistry. 115 (2012): 155-162. AbstractWebsite

The short Cu2+-S(Met) bond in pseudoazurin (PAz) results in the presence of two relatively intense S-p(pi) and S-p(sigma) charge transfer (CT) transitions. This has enabled resonance Raman (rR) data to be obtained for each excited state. The rR data show very different intensity distribution patterns for the vibrations in the 300-500 cm(-1) region. Time-dependent density functional theory (TDDFT) calculations have been used to determine that the change in intensity distribution between the S-p(pi) and S-p(sigma) excited states reflects the differential enhancement of S(Cys) backbone modes with Cu-S(Cys)-C-beta out-of-plane (oop) and in-plane (ip) bend character in their respective potential energy distributions (PEDs). The rR excited state distortions have been related to ground state reorganization energies (lambda s) and predict that, in addition to M-L stretches, the Cu-S(Cys)-C-beta oop bend needs to be considered. DFT calculations predict a large distortion in the Cu-S(Cys)-C-beta oop bending coordinate upon reduction of a blue copper (BC) site; however, this distortion is not present in the X-ray crystal structures of reduced BC sites. The lack of Cu-S(Cys)-C-beta oop distortion upon reduction corresponds to a previously unconsidered constraint on the thiolate ligand orientation in the reduced state of BC proteins and can be considered as a contribution to the entatic/rack nature of BC sites. (C) 2012 Elsevier Inc. All rights reserved.

Veigas, Bruno, Jorge M. Jacob, Mafalda N. Costa, David S. Santos, Miguel Viveiros, Joao Inacio, Rodrigo Martins, Pedro Barquinha, Elvira Fortunato, and Pedro Viana Baptista. "Gold on paper-paper platform for Au-nanoprobe TB detection." Lab on a Chip. 12 (2012): 4802-4808. AbstractWebsite
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Santos, J. P., A. M. Costa, M. C. Martins, P. Indelicato, and F. Parente. "K X-Ray Energies and Transition Probabilities for He-, Li- and Be-like Praseodymium ions." J. Phys.: Conf. Ser.. 388 (2012): 152018. AbstractWebsite

Theoretical transition energies and probabilities for He-, Li and Be-like Praseodymium ions are calcu- lated in the framework of the multi-configuration Dirac-Fock method (MCDF), including QED corrections. These calculated values are compared to recent experimental data obtained in the Livermore SuperEBIT electron beam ion trap facility [1].

Santos, J. P., A. M. Costa, M. C. Martins, P. Indelicato, and F. Parente. "K X-Ray Energies and Transition Probabilities for He-, Li- and Be-like Praseodymium ions." Journal of Physics: Conference Series. 388 (2012): 152018. AbstractWebsite

Theoretical transition energies and probabilities for He-, Li and Be-like Praseodymium ions are calcu- lated in the framework of the multi-configuration Dirac-Fock method (MCDF), including QED corrections. These calculated values are compared to recent experimental data obtained in the Livermore SuperEBIT electron beam ion trap facility [1].

Marques, J., F. Parente, A. Costa, M. Martins, P. Indelicato, and J. P. Santos. "Decay of the 1s^{2}2s3p ^{3}P_{0} level in Be-like ions." Phys. Rev. A. 86 (2012): 052521. AbstractWebsite

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Dell'acqua, S., S. R. Pauleta, J. J. Moura, and I. Moura. "Biochemical characterization of the purple form of Marinobacter hydrocarbonoclasticus nitrous oxide reductase." Philos Trans R Soc Lond B Biol Sci. 367 (2012): 1204-12. AbstractWebsite

Nitrous oxide reductase (N(2)OR) catalyses the final step of the denitrification pathway-the reduction of nitrous oxide to nitrogen. The catalytic centre (CuZ) is a unique tetranuclear copper centre bridged by inorganic sulphur in a tetrahedron arrangement that can have different oxidation states. Previously, Marinobacter hydrocarbonoclasticus N(2)OR was isolated with the CuZ centre as CuZ*, in the [1Cu(2+) : 3Cu(+)] redox state, which is redox inert and requires prolonged incubation under reductive conditions to be activated. In this work, we report, for the first time, the isolation of N(2)OR from M. hydrocarbonoclasticus in the 'purple' form, in which the CuZ centre is in the oxidized [2Cu(2+) : 2Cu(+)] redox state and is redox active. This form of the enzyme was isolated in the presence of oxygen from a microaerobic culture in the presence of nitrate and also from a strictly anaerobic culture. The purple form of the enzyme was biochemically characterized and was shown to be a redox active species, although it is still catalytically non-competent, as its specific activity is lower than that of the activated fully reduced enzyme and comparable with that of the enzyme with the CuZ centre in either the [1Cu(2+) : 3Cu(+)] redox state or in the redox inactive CuZ* state.

Duarte, Faria, Inácio Micael, Lúcio Válter, and Ramos António. "Punching of Strengthened Concrete Flat Slabs—Experimental Analysis and Comparison with Codes." Structural Engineering International. 22 (2012): 202-214. AbstractWebsite

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Boavida, Nuno, and António Brandão Moniz Research and development expenditure in the business sector as indicator of knowledge economy: the Portuguese experience. Universidade Nova de Lisboa, IET-Research on Enterprise and Work Innovation, Faculty of Science and Technology, 2012. Abstract

The objective of the paper is to help to understand recent changes in the structure of R&D activities, by analyzing data on the expenditure of the business sector in research and development (R&D). The results are framed in an international context, through comparison with indicators from the most developed countries, divided by technological intensity and economic activity. The study reveals that the indicators of Portuguese R&D expenditure in the business sector are closely linked both to fiscal policy and to high foreign direct investment in knowledge-intensive industries. It also links these indicators to phenomena such as the abundance of skilled labor in pharmaceutical industries and the government intervention in some sectors of the economy (namely health and rail transportation).

Delgado-Gomes, Vasco, Jose A. Oliveira-Lima, Joao F. Martins, Celson Lima, and Pedro Pereira. "Towards to a Web Service alert software system for standard electrical protective devices." Intelligent Engineering Systems (INES), 2012 IEEE 16th International Conference on. Lisbon, Portugal 2012. 197-201. Abstract

Electrical Protective Devices are key elements in the electrical network. Their purpose is to perform fault detection in electric power systems, by analysing power system voltages and currents. In order to achieve a more centralized control, protective devices can be connected using Web Services through a Service-Oriented Architecture (SOA) approach. This work targets planning and specification of a mapping between Abstract Communication Service Interface (ACSI) Reporting and Device Profile for Web Services (DPWS) Eventing to achieve a better protective electrical devices control, obtaining an event based alert software system, replacing conventional polling-based systems.

Fortunato, E., P. Barquinha, and R. Martins. "Oxide Semiconductor Thin-Film Transistors: A Review of Recent Advances." Advanced Materials. 24 (2012): 2945-2986. AbstractWebsite
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JDS, Martins, Henriques CMR, Borges JPMR, Prata SGM, Almeida M, and Silva JAMC Biodegradable occlusive membranes for oral and periodontal surgery. Vol. 6. JOURNAL OF TISSUE ENGINEERING AND REGENERATIVE MEDICINE, 6., 2012. Abstract
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M., Krippahl, and Grilo A. "Compatibility between design and construction building information models." eWork and eBusiness in Architecture, Engineering and Construction. 2012. 447-452. Abstract
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MB, Gawande, Velhinho A, Nogueira ID, Ghumman CAA, Teodoro OMND, and Branco PS. "A facile synthesis of cysteine-ferrite magnetic nanoparticles for application in multicomponent reactions-a sustainable protocol." RSC ADVANCES. 2 (2012): 6144-6149. Abstract
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M., Cabrita, Cruz-Machado V., and Grilo A. "Linking knowledge management and intellectual capital: An evidence based on Portuguese banks study." International Conference on Innovation Management and Technology Research. 2012. 417-422. Abstract
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Mannion, PD, P. Upchurch, O. Mateus, RN Barnes, and MEH Jones. "New information on the anatomy and systematic position of Dinheirosaurus lourinhanensis (Sauropoda: Diplodocoidea) from the Late Jurassic of Portugal, with a review of European diplodocoids." Journal of Systematic Palaeontology. 10.3 (2012): 521-551. Abstractmannion_et_al_2012_new_information_on_the_anatomy_and_systematic_position_of_dinheirosaurus_lourinhanensis_sauropoda_-_diplodocoidea_from_the_late_jurassic_of_portugal_with_a_review_of_european_diplodocoids.pdf

Although diplodocoid sauropods from Africa and the Americas are well known, their European record remains largely neglected. Here we redescribe Dinheirosaurus lourinhanensis from the Late Jurassic of Portugal. The holotype comprises two posterior cervical vertebrae, the dorsal series and a caudal centrum. Redescription demonstrates its validity on the basis of three autapomorphies: (1) posteriorly restricted ventral keel on posterior cervical vertebrae; (2) three small subcircular fossae posterior to the lateral coel on posterior cervical neural spines; (3) accessory lamina linking the hyposphene with base of the posterior centrodiapophyseal lamina in middle-posterior dorsal vertebrae. Phylogenetic analysis places Dinheirosaurus as the sister taxon to Supersaurus, and this clade forms the sister taxon to other diplodocines. However, this position should be treated with caution as Dinheirosaurus displays several plesiomorphic features absent in other diplodocids (including unbifurcated presacral neural spines, and dorsolaterally projecting diapophyses on dorsal vertebrae) and only four additional steps are required to place Dinheirosaurus outside of Flagellicaudata. We identify Amazonsaurus as the basal-most rebbachisaurid and recover Zapalasaurus outside of the South American Limaysaurinae, suggesting the biogeographic history of rebbachisaurids is more complex than previously proposed. Review of the European diplodocoid record reveals evidence for the earliest known diplodocid, as well as additional diplodocid remains from the Late Jurassic of Spain. A Portuguese specimen, previously referred to Dinheirosaurus, displays strong similarities to Apatosaurus from the contemporaneous Morrison Formation of North America, indicating the presence of a second Late Jurassic Portuguese diplodocid taxon. Along with Dinheirosaurus, these Portuguese remains provide further evidence for a Late Jurassic palaeobiogeographic connection between Europe and North America. No dicraeosaurids are currently known from Europe, but rebbachisaurids are present in the Early Cretaceous, with weak evidence for the earliest known representative from the Late Jurassic of Spain; however, more complete material is required to recognize early members of this clade.

Smith, AS, R. Araújo, and O. Mateus. "A new plesiosauroid from the Toarcian (Lower Jurassic) of Alhadas, Portugal." Acta Palaeontologica Polonica. 57.2 (2012): 257-266. Abstractsmith__araujo__mateus_2012_a_new_plesiosauroid_from_the_toarcian_lower_jurassic_of_alhadas_portugal.pdf

A partial plesiosauroid skull from the São Gião Formation (Toarcian, Lower Jurassic) of Alhadas, Portugal is re−evaluated and described as a new taxon, Lusonectes sauvagei gen. et sp. nov. It has a single autapomorphy, a broad triangular parasphenoid cultriform process that is as long as the posterior interpterygoid vacuities, and also a unique character combination, including a jugal that contacts the orbital margin, a distinct parasphenoid–basisphenoid suture exposed between the posterior interpterygoid vacuities, lack of an anterior interpterygoid vacuity, and striations on the ventral surface of
the pterygoids. Phylogenetic analysis of Jurassic plesiosauroids places Lusonectes as outgroup to “microcleidid elasmosaurs”, equivalent to the clade Plesiosauridae. Lusonectes sauvagei is the only diagnostic plesiosaur from Portugal, and the westernmost occurrence of any plesiosaurian in Europe.

J, Beirlant, Caeiro F, and Gomes MI. "An Overview And Open Research Topics In Statistics Of Univariate Extremes." 10 (2012): 1-31. Abstract
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