http://docentes.fct.unl.pt/lblm/files/inorgchem-2017-56-8900.pdf

In this paper an interoperability solution is proposed, aiming to go from (building) construction models to energy simulation. Moreover, the energy simulation results will feed the KPI’s analysis of a designed building. The proposed solution will be used to translate different data formats allowing the communication between different systems in an automated environment. The solution presented in this paper exploits the concept of Plug’n’Interoperate (PnI), that is supported by the principle of self-configuration as to automate, as much as possible, the configuration and participation of systems into a shared interoperability environment. In order to validate this approach two different scenarios were taken into account, translating from a CAD (Computer- Aided Design) model data format to an energy simulation data format.

The nitric oxide radical ˙NO (NO) is a signalling molecule involved in several physiological processes in humans, including vasodilation, immune response, neurotransmission, platelet aggregation, apoptosis and gene expression. Undue normal conditions, NO synthases catalyse the formation of NO from l-arginine and dioxygen. Yet, upon a hypoxic event, when the decreased dioxygen concentration compromises NO synthase activity, cells can generate NO from another source: nitrite. Since the late 1990s, it has become clear that nitrite can be reduced back to NO under hypoxic/anoxic conditions. Simultaneously, it was realised that nitrite can exert a significant cytoprotective action in vivo during ischaemia and other pathological conditions. Presently, blood and tissue nitrite are recognised as NO “storage forms” that can be made available in order to maintain NO formation and ensure cell signalling and survival under challenging conditions. To reduce nitrite to NO, human cells can use different metalloproteins that are present in cells for carrying out other functions, including several haemic proteins and molybdoenzymes, forming what we refer to as “non-dedicated nitrite reductases”. In this chapter, two non-dedicated nitrite reductases—xanthine oxidase and myoglobin—will be described, and the human nitrate/nitrite/NO signalling pathway will be discussed within the cellular context and the nitrogen cycle scenario.

http://docentes.fct.unl.pt/lblm/files/rsc_book-denitrification-2017-chap_17.pdf

Molybdenum is essential to most organisms, being found in the active site of enzymes that catalyze redox reactions involving carbon, nitrogen and sulfur atoms of key metabolites. Some of the molybdenum-dependent reactions constitute key steps in the global biogeochemical cycles of carbon, nitrogen and sulfur, with particular emphasis on the atmospheric dinitrogen fixation into ammonium. Presently, more than 50 molybdoenzymes are known. The great majority are prokaryotic, with eukaryotes holding only a restricted number of molybdoenzymes. Tungsten, probably because of its limited bioavailability, is less used, being found most often in anaerobic thermophilic prokaryotes.

This chapter provides an overview on the molybdo- and tungstoenzymes.
Their physiological context and significance will be described in Section 1.2,where the recent hypothesis that the lack of molybdenum could have been the limiting factor for the life evolution and expansion on early Earth will receive special attention (Section 1.2.1). A brief introduction to the chemical properties that shape the catalytically competent molybdenum/tungsten centres will be made in Section 1.3. In Section 1.4, the enzymes will be grouped in five main families (Sections 1.4.1 to 1.4.5), according to their metal/cofactor structure, and a general view on the structural (section (a)) and mechanistic (section (b)) versatility of each family will be presented. A brief account of novel heteronuclear centres containing molybdenum, whose physiological function is not yet fully understood, will be made in Section 1.4.6. A final outlook on our present knowledge about these enzymes will conclude this chapter.

http://docentes.fct.unl.pt/lblm/files/mo_w_enzymes-rsc_book-chap_1.pdf

http://docentes.fct.unl.pt/lblm/files/ica-2017-455-350.pdf

A new stem cheloniid turtle, Cabindachelys landanensis, gen. et sp. nov., is represented by a nearly complete skull and partial hyoid collected in lower Paleocene shallow marine deposits, equivalent to the offshore Landana Formation, near the town of Landana in Cabinda, Angola. A partial chelonioid carapace previously reported from this locality is referred here to C. landanensis. Cabindachelys landanensis possesses clear synapomorphies of Pan-Cheloniidae, including a rod-like rostrum basisphenoidale, V-shaped basisphenoid crest, and secondary palate, but also retains a reduced foramen palatinum posterius, unlike most other pan-cheloniids. Phylogenetic analysis suggests that C. landanensis forms a weakly-supported clade with Erquelinnesia gosseleti, Euclastes acutirostris, Euclastes wielandi and Terlinguachelys fischbecki, although a close relationship between the protostegid T. fischbecki and these durophagous pan-cheloniids is unlikely. The Paleocene–Eocene strata near Landana have produced a number of turtle fossils, including the holotype specimen of the pleurodire Taphrosphys congolensis. A turtle humerus collected c. 1 m above the holotype skull of C. landanensis differs from humeri of chelonioids and Taphrosphys, indicating that a third turtle taxon is present at Landana. Cheloniid fossil material is rare in the Landana assemblage, in comparison with the abundant remains of Taphrosphys congolensis found throughout the stratigraphic section. This disparity implies that C. landanensis preferred open marine habitats, whereas Taphrosphys congolensis spent more time in nearshore environments. The appearance of new durophagous species such as C. landanensis in the early Paleocene reflects the rapid radiation of pan-cheloniids as they diversified into open niches following the K–Pg extinction.

This paper uses the combinatorics of Young tableaux to prove the plactic monoid of infinite rank does not satisfy a non-trivial identity, by showing that the plactic monoid of rank n cannot satisfy a non-trivial identity of length less than or equal to n. A new identity is then proven to hold for the monoid of n×n upper-triangular tropical matrices. Finally, a straightforward embedding is exhibited of the plactic monoid of rank 3 into the direct product of two copies of the monoid of 3×3 upper-triangular tropical matrices, giving a new proof that the plactic monoid of rank 3 satisfies a non-trivial identity.

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The class of finitely presented monoids defined by homogeneous (length-preserving) relations
is considered. The properties of admitting a finite complete rewriting system, having finite derivation type, being automatic, and being biautomatic, are investigated for monoids in this class. The first main result shows that for any possible combination of these properties and their negations there is a homoegenous monoid with exactly this combination of properties. We then extend this result to show that the same statement holds even if one restricts attention to the class of $n$-ary multihomogeneous monoids (meaning every side of every relation has fixed length $n$, and all relations are also content preserving).

Diplodocids are among the best known sauropod dinosaurs. Numerous specimens of currently 15 accepted species belonging to ten genera have been reported from the Late Jurassic to Early Cretaceous of North and South America, Europe, and Africa. The highest diversity is known from the Upper Jurassic Morrison Formation of the western United States: a recent review recognized 12 valid, named species, and possibly three additional, yet unnamed ones. One of these is herein described in detail and referred to the genus \textit{Galeamopus}. The holotype specimen of \textit{Galeamopus pabsti} sp. nov., SMA 0011, is represented by material from all body parts but the tail, and was found at the Howe-Scott Quarry in the northern Bighorn Basin in Wyoming, USA. Autapomorphic features of the new species include a horizontal canal on the maxilla that connects the posterior margin of the preantorbital and the ventral margin of the antorbital fenestrae, a vertical midline groove marking the sagittal nuchal crest, the presence of a large foramen connecting the postzygapophyseal centrodiapophyseal fossa and the spinopostzygapophyseal fossa of mid- and posterior cervical vertebrae, a very robust humerus, a laterally placed, rugose tubercle on the concave proximal portion of the anterior surface of the humerus, a relatively stout radius, the absence of a distinct ambiens process on the pubis, and a distinctly concave posteroventral margin of the ascending process of the astragalus. In addition to the holotype specimen SMA 0011, the skull USNM 2673 can also be referred to \textit{Galeamopus pabsti}. Histology shows that the type specimen SMA 0011 is sexually mature, although neurocentral closure was not completed at the time of death. Because SMA 0011 has highly pneumatized cervical vertebrae, the development of the lamination appears a more important indicator for individual age than neurocentral fusion patterns. SMA 0011 is one of very few sauropod specimens that preserves the cervico-dorsal transition in both vertebrae and ribs. The association of ribs with their respective vertebrae shows that the transition between cervical and dorsal vertebrae is significantly different in \textit{Galeamopus pabsti} than in \textit{Diplodocus carnegii} or \textit{Apatosaurus louisae}, being represented by a considerable shortening of the centra from the last cervical to the first dorsal vertebra. Diplodocids show a surprisingly high diversity in the Morrison Formation. This can possibly be explained by a combination of geographical and temporal segregation, and niche partitioning.

Phylogenetic analyses of morphological data are often characterized by missing data due to incomplete operational taxonomic units, as in fossils. This incomplete knowledge derives from various reasons, including—in the case of fossils—the numerous filters an organism has to pass through during taphonomy, fossilization, weathering and collecting. Whereas several methods have been proposed to address issues raised by the inclusion of incomplete terminal taxa, until recently no tool existed to easily quantify the amount of anatomical overlap within a particular clade. The Overlap Indices provide such values and might prove useful for comparative cladistics. We herein describe these new indices and their applications in detail and provide an example file for their calculation. A case study of diplodocid sauropod dinosaurs shows how the Overlap Indices will help to explore and quantify, which one of a number of conflicting tree topologies is supported by more anatomical traits, which skeletal regions are underrepresented in a particular phylogenetic matrix, and which taxon would improve character state score completeness.

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http://docentes.fct.unl.pt/lblm/files/inorgchem-2017-56-2210.pdf

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