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2023
Fernandes, Vítor H., and Tânia Paulista. "On the Rank of Monoids of Endomorphisms of a Finite Directed Path." Asian-European Journal of Mathematics (DOI 10.1142/S1793557123500699; Online 28 Oct 2022). 16.04 (2023): 2350069 (13 pages). AbstractWebsite

In this paper we consider endomorphisms of a finite directed path from monoid generators perspective. Our main aim is to determine the rank of the monoid wEndP_n of all weak endomorphisms of a directed path with n vertices, which is a submonoid of the widely studied monoid O_n of all order-preserving transformations of a n-chain. Also, we describe the regular elements of wEndP_n and calculate its size and number of idempotents.

Fernandes, Vítor H. "Oriented transformations on a finite chain: another description." Commun. Korean Math. Soc. (DOI 10.4134/CKMS.c220272; Online 12 July 2023). 38.3 (2023): 725-731. AbstractWebsite

Following the new description of an oriented full transformation on a finite chain given recently by Higgins and Vernitsk,
in this short note we present a refinement of this description which is extendable to partial transformations and to injective partial transformations.

Dimitrova, I., Vítor H. Fernandes, J. Koppitz, and T. M. Quinteiro. "Presentations for three remarkable submonoids of the dihedral inverse monoid on a finite set." Semigroup Forum (DOI 10.1007/s00233-023-10396-5; Online 31 Oct 2023). 107 (2023): 315-338. AbstractWebsite

In this paper we consider the submonoids OPDI_n, MDI_n and ODI_n of the dihedral inverse monoid DI_n of all orientation-preserving, monotone and order-preserving transformations, respectively. Our goal is to exhibit presentations for each of these three monoids.

Rodrigues, Alexandra P., Pedro M. P. Santos, João Pedro Veiga, Maria Helena Casimiro, and Luís M. Ferreira. "Electron Beam Irradiation on the Production of a Si- and Zr-Based Hybrid Material: A Study by FTIR and WDXRF." Materials. 16 (2023). AbstractWebsite

Sol-gel production of hybrid materials has, to some extent, revolutionised materials’ engineering and the way science and technology perceive the creation of new materials. Despite that, the method presents some limitations that are circumvented by radiation processing. Electron beam irradiation was used to promote synthesis of hybrid structures while using silanol-terminated PDMS, TEOS and TPOZ as precursors. Evaluation of the method’s performance was executed by gel fraction determination, WDXRF and FTIR-ATR. Results showed that, although there is some pre-irradiation reactivity between precursors, radiolysis induces scission on multiple sites of precursor’s structures, which induces hybrid network formation to a greater extent. Characterisation allowed determining electron beam irradiation to be effective in the creation of Si–O–Zr bonds, resulting in the production of a Class II hybrid material.

Santos, I. M., M. Alexandre, V. D. Mihailetchi, J. A. Silva, T. Mateus, A. Mouquinho, J. Boane, A. T. Vicente, D. Nunes, U. D. Menda, H. Águas, E. Fortunato, R. Martins, and MJ Mendes. "Optically-Boosted Planar IBC Solar Cells with Electrically-Harmless Photonic Nanocoatings." Advanced Optical Materials. 11 (2023). AbstractWebsite
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Pinheiro, A., A. Ruivo, J. Rocha, M. Ferro, JV Pinto, J. Deuermeier, T. Mateus, A. Santa, MJ Mendes, R. Martins, S. Gago, C. A. T. Laia, and H. Águas. "Parylene-Sealed Perovskite Nanocrystals Down-Shifting Layer for Luminescent Spectral Matching in Thin Film Photovoltaics." Nanomaterials. 13 (2023). AbstractWebsite
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Duarte, Marlene, Victor D. Alves, Márcia Correia, Catarina Caseiro, Luís M. A. Ferreira, Maria João Romão, Ana Luísa Carvalho, Shabir Najmudin, Edward A. Bayer, Carlos M. G. A. Fontes, and Pedro Bule. "Structure-function studies can improve binding affinity of cohesin-dockerin interactions for multi-protein assemblies." International Journal of Biological Macromolecules. 224 (2023): 55-67. AbstractWebsite

The cellulosome is an elaborate multi-enzyme structure secreted by many anaerobic microorganisms for the efficient degradation of lignocellulosic substrates. It is composed of multiple catalytic and non-catalytic components that are assembled through high-affinity protein-protein interactions between the enzyme-borne dockerin (Doc) modules and the repeated cohesin (Coh) modules present in primary scaffoldins. In some cellulosomes, primary scaffoldins can interact with adaptor and cell-anchoring scaffoldins to create structures of increasing complexity. The cellulosomal system of the ruminal bacterium, Ruminococcus flavefaciens, is one of the most intricate described to date. An unprecedent number of different Doc specificities results in an elaborate architecture, assembled exclusively through single-binding-mode type-III Coh-Doc interactions. However, a set of type-III Docs exhibits certain features associated with the classic dual-binding mode Coh-Doc interaction. Here, the structure of the adaptor scaffoldin-borne ScaH Doc in complex with the Coh from anchoring scaffoldin ScaE is described. This complex, unlike previously described type-III interactions in R. flavefaciens, was found to interact in a dual-binding mode. The key residues determining Coh recognition were also identified. This information was used to perform structure-informed protein engineering to change the electrostatic profile of the binding surface and to improve the affinity between the two modules. The results show that the nature of the residues in the ligand-binding surface plays a major role in Coh recognition and that Coh-Doc affinity can be manipulated through rational design, a key feature for the creation of designer cellulosomes or other affinity-based technologies using tailored Coh-Doc interactions.

Ribeiro, G., G. Ferreira, U. D. Menda, M. Alexandre, M. J. Brites, M. A. Barreiros, S. Jana, H. Águas, R. Martins, P. A. Fernandes, P. Salomé, and MJ Mendes. "Sub-Bandgap Sensitization of Perovskite Semiconductors via Colloidal Quantum Dots Incorporation." Nanomaterials. 13 (2023). AbstractWebsite
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Coelho, João, Ricardo F. Correia, Sara Silvestre, Tomás Pinheiro, Ana C. Marques, Rosário M. P. Correia, Joana Vaz Pinto, Elvira Fortunato, and Rodrigo Martins. "{Paper-based laser-induced graphene for sustainable and flexible microsupercapacitor applications}." Microchimica Acta. 190 (2023): 1-10. Abstract

Laser-induced graphene (LIG) is as a promising material for flexible microsupercapacitors (MSCs) due to its simple and cost-effective processing. However, LIG-MSC research and production has been centered on non-sustainable polymeric substrates, such as polyimide. In this work, it is presented a cost-effective, reproducible, and robust approach for the preparation of LIG structures via a one-step laser direct writing on chromatography paper. The developed strategy relies on soaking the paper in a 0.1 M sodium tetraborate solution (borax) prior to the laser processing. Borax acts as a fire-retardant agent, thus allowing the laser processing of sensitive substrates that other way would be easily destroyed under the high-energy beam. LIG on paper exhibiting low sheet resistance (30 $Ømega$ sq−1) and improved electrode/electrolyte interface was obtained by the proposed method. When used as microsupercapacitor electrodes, this laser-induced graphene resulted in specific capacitances of 4.6 mF cm−2 (0.015 mA cm−2). Furthermore, the devices exhibit excellent cycling stability (> 10,000 cycles at 0.5 mA cm−2) and good mechanical properties. By connecting the devices in series and parallel, it was also possible to control the voltage and energy delivered by the system. Thus, paper-based LIG-MSC can be used as energy storage devices for flexible, low-cost, and portable electronics. Additionally, due to their flexible design and architecture, they can be easily adapted to other circuits and applications with different power requirements. Graphical Abstract: [Figure not available: see fulltext.]

Pinheiro, Ana, Andreia Ruivo, Marta Ferro, Joana Vaz Pinto, Jonas Deuermeier, Tiago Mateus, Ana Santa, Manuel J. Mendes, Rodrigo Martins, Sandra Gago, C. A. T. Laia, and Á. Hugo. "{Parylene-Sealed Perovskite Nanocrystals Down-Shifting Layer for Luminescent Spectral Matching in Thin Film Photovoltaics}." (2023). Abstract
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2022
Correia, Ricardo, Jonas Deuermeier, Maria Rosário Correia, Joana {Vaz Pinto}, João Coelho, Elvira Fortunato, and Rodrigo Martins. "{Biocompatible Parylene-C Laser-Induced Graphene Electrodes for Microsupercapacitor Applications}." ACS Applied Materials {&} Interfaces. 14 (2022): 46427-46438. AbstractWebsite
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Silva, Daniela, Catarina S. Monteiro, Susana O. Silva, Orlando Frazão, Joana V. Pinto, Maria Raposo, Paulo A. Ribeiro, and Susana Sério. "{Sputtering Deposition of TiO2 Thin Film Coatings for Fiber Optic Sensors}." Photonics. 9 (2022): 342. Abstract

Thin films of titanium dioxide (TiO2) and titanium (Ti) were deposited onto glass and optical fiber supports through DC magnetron sputtering, and their transmission was characterized with regard to their use in optical fiber-based sensors. Deposition parameters such as oxygen partial pressure, working pressure, and sputtering power were optimized to attain films with a high reflectance. The films deposited on glass supports were characterized by UV-Vis spectroscopy, X-ray diffraction (XRD), and scanning electron microscopy (SEM). Regarding the deposition parameters, all three parameters were tested simultaneously, changing the working pressure, the sputtering power, and the oxygen percentage. It was possible to conclude that a lower working pressure and higher applied power lead to films with a higher reflectance. Through the analysis of the as-sputtered thin films using X-ray diffraction, the deposition of both Ti and TiO2 films was confirmed. To study the applicability of TiO2 and Ti in fiber sensing, several thin films were deposited in single mode fibers (SMFs) using the sputtering conditions that revealed the most promising results in the glass supports. The sputtered TiO2 and Ti thin films were used as mirrors to increase the visibility of a low-finesse Fabry–Perot cavity and the possible sensing applications were studied.

Rovisco, Ana, Maria Morais, Rita Branquinho, Elvira Fortunato, Rodrigo Martins, and Pedro Barquinha. "{Microwave-Assisted Synthesis of Zn2SnO4 Nanostructures for Photodegradation of Rhodamine B under UV and Sunlight}." Nanomaterials. 12 (2022): 2119. AbstractWebsite

The contamination of water resources by pollutants resulting from human activities represents a major concern nowadays. One promising alternative to solve this problem is the photocatalytic process, which has demonstrated very promising and efficient results. Oxide nanostructures are interesting alternatives for these applications since they present wide band gaps and high surface areas. Among the photocatalytic oxide nanostructures, zinc tin oxide (ZTO) presents itself as an eco-friendly alternative since its composition includes abundant and non-toxic zinc and tin, instead of critical elements. Moreover, ZTO nanostructures have a multiplicity of structures and morphologies possible to be obtained through low-cost solution-based syntheses. In this context, the current work presents an optimization of ZTO nanostructures (polyhedrons, nanoplates, and nanoparticles) obtained by microwave irradiation-assisted hydrothermal synthesis, toward photocatalytic applications. The nanostructures' photocatalytic activity in the degradation of rhodamine B under both ultraviolet (UV) irradiation and natural sunlight was evaluated. Among the various morphologies, ZTO nanoparticles revealed the best performance, with degradation > 90% being achieved in 60 min under UV irradiation and in 90 min under natural sunlight. The eco-friendly production process and the demonstrated ability of these nanostructures to be used in various water decontamination processes reinforces their sustainability and the role they can play in a circular economy.

Firmino, Rita, Emanuel Carlos, Joana Vaz Pinto, Jonas Deuermeier, Rodrigo Martins, Elvira Fortunato, Pedro Barquinha, and Rita Branquinho. "{Solution Combustion Synthesis of Hafnium-Doped Indium Oxide Thin Films for Transparent Conductors}." Nanomaterials. 12 (2022): 2167. AbstractWebsite

{\textless}p{\textgreater}Indium oxide (In2O3)-based transparent conducting oxides (TCOs) have been widely used and studied for a variety of applications, such as optoelectronic devices. However, some of the more promising dopants (zirconium, hafnium, and tantalum) for this oxide have not received much attention, as studies have mainly focused on tin and zinc, and even fewer have been explored by solution processes. This work focuses on developing solution-combustion-processed hafnium (Hf)-doped In2O3 thin films and evaluating different annealing parameters on TCO's properties using a low environmental impact solvent. Optimized TCOs were achieved for 0.5 M{%} Hf-doped In2O3 when produced at 400 °C, showing high transparency in the visible range of the spectrum, a bulk resistivity of 5.73 × 10−2 $Ømega$.cm, a mobility of 6.65 cm2/V.s, and a carrier concentration of 1.72 × 1019 cm−3. Then, these results were improved by using rapid thermal annealing (RTA) for 10 min at 600 °C, reaching a bulk resistivity of 3.95 × 10 −3 $Ømega$.cm, a mobility of 21 cm2/V.s, and a carrier concentration of 7.98 × 1019 cm−3, in air. The present work brings solution-based TCOs a step closer to low-cost optoelectronic applications.{\textless}/p{\textgreater}

Fonseca, Amândio, Corneliu Cismasiu, and Ildi Cismasiu. "Avaliação da vulnerabilidade sísmica de um edifício pombalino através de análise dinâmica incremental." Jornadas Portuguesas de Engenharia de Estruturas (JPEE). Lisboa: LNEC, APEE, GPBE, SPES, 2022. art_jpee2022_266_afccic_v8.pdf
Amaro, P., A. Adamczak, Abdou M. Ahmed, L. Affolter, F. D. Amaro, P. Carvalho, T. L. Chen, L. M. P. Fernandes, M. Ferro, D. Goeldi, T. Graf, M. Guerra, T. W. Hänsch, C. A. O. Henriques, Y. C. Huang, P. Indelicato, O. Kara, K. Kirch, A. Knecht, F. Kottmann, Y. W. Liu, J. Machado, M. Marszalek, R. D. P. Mano, C. M. B. Monteiro, F. Nez, J. Nuber, A. Ouf, N. Paul, R. Pohl, E. Rapisarda, J. M. F. dos Santos, J. P. Santos, P. A. O. C. Silva, L. Sinkunaite, J. T. Shy, K. Schuhmann, S. Rajamohanan, A. Soter, L. Sustelo, D. Taqqu, L. B. Wang, F. Wauters, P. Yzombard, M. Zeyen, and A. Antognini. "Laser excitation of the 1s-hyperfine transition in muonic hydrogen." SciPost Physics. 13 (2022). Abstract

The CREMA collaboration is pursuing a measurement of the ground-state hyperfine splitting (HFS) in muonic hydrogen (μp) with 1 ppm accuracy by means of pulsed laser spectroscopy to determine the two-photon-exchange contribution with 2×10-4 relative accuracy. In the proposed experiment, the μp atom undergoes a laser excitation from the singlet hyperfine state to the triplet hyperfine state, then is quenched back to the singlet state by an inelastic collision with a H2 molecule. The resulting increase of kinetic energy after the collisional deexcitation is used as a signature of a successful laser transition between hyperfine states. In this paper, we calculate the combined probability that a μp atom initially in the singlet hyperfine state undergoes a laser excitation to the triplet state followed by a collisional-induced deexcitation back to the singlet state. This combined probability has been computed using the optical Bloch equations including the inelastic and elastic collisions. Omitting the decoherence effects caused by the laser bandwidth and collisions would overestimate the transition probability by more than a factor of two in the experimental conditions. Moreover, we also account for Doppler effects and provide the matrix element, the saturation fluence, the elastic and inelastic collision rates for the singlet and triplet states, and the resonance linewidth. This calculation thus quantifies one of the key unknowns of the HFS experiment, leading to a precise definition of the requirements for the laser system and to an optimization of the hydrogen gas target where μp is formed and the laser spectroscopy will occur.

Ferreira, Inês João, Filipe Oliveira, Ana Rita Jesus, Alexandre Paiva, and Ana Rita C. Duarte. "Current methodologies for the assessment of deep eutectic systems toxicology: Challenges and perspectives." 362 (2022): 119675. AbstractWebsite

Deep eutectic systems (DES) are a mixture of two or more components where at least one works as a hydrogen bond acceptor (HBA) and another as a hydrogen bond donor (HBD). DES most distinctive characteristic is the fact that the mixture possesses a lower melting point, when compared to the melting point of its individual components. These systems have emerged as a “greener alternative” to organic solvents, while also offering several advantages over other “green” solvents such as ionic liquids (IL). However, the number of studies concerning the real biodegradability and biocompatibility are scarce and the methodologies are scattered through different articles. Current state of the art provides several reports using different models, namely using prokaryotic and eukaryotic cells but also more complex models considering whole organisms, such as plants and animals, attempting to understand DES toxicity at different complexity levels. The currently used methodologies is very different among authors, thus the standardization is urgently needed. This review’s purpose is to summarize the available data about DES toxicity, biocompatibility and biodegradability, while also assembling the different methodologies used in an effort to pave the way so that standard guidelines for future research work are established.

Querido, Diana, Tânia Vieira, José Luís Ferreira, Célia Henriques, João Paulo Borges, and Jorge Carvalho Silva. "Study on the Incorporation of Chitosan Flakes in Electrospun Polycaprolactone Scaffolds." 14.8 (2022): 1496. Abstract
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Pereira, Miguel Alves, Duarte Caldeira Dinis, Diogo Cunha Ferreira, José Rui Figueira, and Rui Cunha Marques. "A network Data Envelopment Analysis to estimate nations’ efficiency in the fight against SARS-CoV-2." Expert Systems with Applications. 210 (2022): 118362. AbstractWebsite
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Fernandes, Cláudio A., Alexei Yu. Karlovich, and Yuri I. Karlovich. "Fourier convolution operators with symbols equivalent to zero at infinity on Banach function spaces." Current Trends in Analysis, its Applications and Computation. Eds. P. Cerejeiras, M. Reissig, I. Sabadini, and J. Toft. Springer, 2022. 335-343.
Fernandes, Cláudio, Oleksiy Karlovych, and Samuel Medalha. "Invertibility of Fourier convolution operators with PC symbols on variable Lebesgue spaces with Khvedelidze weights." Journal of Mathematical Sciences. 266.3 (2022): 419-434.Website
Fernandes, AF, V. Beccari, AWA Kellner, and O. Mateus A new Gnathosaurine (Archaeopterodactyloidea, Pterosauria) from the Late Jurassic of Portugal. XIX Annual Conference of the European Association of Vertebrate Palaeontologists., 2022. Abstractfernandes_et_al_2022_pterosaur_eavp_2022_abstract_volume.pdf

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Ferrari, L., FM Rotatori, B. Camilo, M. Moreno-Azanza, and O. Mateus New specimen of dryomorphan (Ornithischia, Iguanodontia) remains from the Upper Jurassic of Portugal. Abstract book of the XIX Annual Conference of the European Association of Vertebrate Palaeontologists, Benevento/Pietraroja, Italy, 27th June-2nd July 2022. PalaeoVertebrata, Special Volume 1- 2022, 224. Doi: 10.18563/pv.eavp, 2022. Abstractferrarietal_2022.pdf

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Fernandes, Cláudio, Oleksiy Karlovych, and Márcio Valente. "On the density of Laguerre functions in some Banach function spaces." Journal of Inequalities and Special Functions. 13.2 (2022): 37-45.Website
Fernandes, Alexandra E., Octávio Mateus, Brian Andres, Michael J. Polcyn, Anne S. Schulp, António Olímpio Gonçalves, and Louis L. Jacobs. "Pterosaurs from the Late Cretaceous of Angola." Diversity. 14 (2022). Abstractdiversity-14-00741.pdfWebsite

Here, we describe the first pterosaur remains from Angola, an assemblage of fourteen bones from the Lower Maastrichtian marine deposits of Bentiaba, Namibe Province. One new species is introduced, Epapatelo otyikokolo, gen. et sp. nov., which comprises an articulated partial left humerus and ulna as well as an articulated left ulna and radius (from a second individual). Phylogenetic analysis confirms a non-nyctosaurid pteranodontian attribution for this new taxon and supports a new apomorphy-based clade, Aponyctosauria, which is here defined. Late Cretaceous pteranodontians are rare in Sub-Saharan Africa and throughout the Southern Hemisphere. Preliminary histological analysis also reveals a likely sub-adult age for one of the specimens. This fossil assemblage provides a first glimpse of Angolan pterosaur paleobiodiversity providing further insight into the Gondwanan ecosystems of the Upper Cretaceous.