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2005
Dyke, J. M., G. Levita, A. Morris, J. S. Ogden, A. A. Dias, M. Algarra, J. P. Santos, M. L. Costa, P. Rodrigues, M. M. Andrade, and M. T. Barros. "Contrasting Behavior in Azide Pyrolyses: An Investigation of the Thermal Decompositions of Methyl Azidoformate, Ethyl Azidoformate and 2-Azido-N, N-dimethylacetamide by Ultraviolet Photoelectron Spectroscopy and Matrix Isolation Infrared Spectroscopy." Chemistry - A European Journal. 11 (2005): 1665-1676. Abstract
The thermal decompositions of methyl azidoformate (N3COOMe), ethyl azidoformate (N3COOEt) and 2-azido-N,N-dimethylacetamide (N3CH2CONMe2) have been studied by matrix isolation infrared spectroscopy and real-time ultraviolet photoelectron spectroscopy. N2 appears as an initial pyrolysis product in all systems, and the principal interest lies in the fate of the accompanying organic fragment. For methyl azidoformate, four accompanying products were observed: HNCO, H2CO, CH2NH and CO2, and these are believed to arise as a result of two competing decomposition routes of a four-membered cyclic intermediate. Ethyl azidoformate pyrolysis yields four corresponding products: HNCO, MeCHO, MeCHNH and CO2, together with the five-membered-ring compound 2-oxazolidone. In contrast, the initial pyrolysis of 2-azido-N,N-dimethyl acetamide, yields the novel imine intermediate Me2NCOCHNH, which subsequently decomposes into dimethyl formamide (HCONMe2), CO, Me2NH and HCN. This intermediate was detected by matrix isolation IR spectroscopy, and its identity confirmed both by a molecular orbital calculation of its IR spectrum, and by the temperature dependence and distribution of products in the PES and IR studies. Mechanisms are proposed for the formation and decomposition of all the products observed in these three systems, based on the experimental evidence and the results of supporting molecular orbital calculations.
Dyke, J. M., G. Levita, A. Morris, J. S. Ogden, A. A. Dias, M. Algarra, J. P. Santos, M. L. Costa, P. Rodrigues, M. M. Andrade, and M. T. Barros. "Contrasting Behavior in Azide Pyrolyses: An Investigation of the Thermal Decompositions of Methyl Azidoformate, Ethyl Azidoformate and 2-Azido-N, N-dimethylacetamide by Ultraviolet Photoelectron Spectroscopy and Matrix Isolation Infrared Spectroscopy." Chemistry - A European Journal. 11 (2005): 1665-1676. Abstract

The thermal decompositions of methyl azidoformate (N3COOMe), ethyl azidoformate (N3COOEt) and 2-azido-N,N-dimethylacetamide (N3CH2CONMe2) have been studied by matrix isolation infrared spectroscopy and real-time ultraviolet photoelectron spectroscopy. N2 appears as an initial pyrolysis product in all systems, and the principal interest lies in the fate of the accompanying organic fragment. For methyl azidoformate, four accompanying products were observed: HNCO, H2CO, CH2NH and CO2, and these are believed to arise as a result of two competing decomposition routes of a four-membered cyclic intermediate. Ethyl azidoformate pyrolysis yields four corresponding products: HNCO, MeCHO, MeCHNH and CO2, together with the five-membered-ring compound 2-oxazolidone. In contrast, the initial pyrolysis of 2-azido-N,N-dimethyl acetamide, yields the novel imine intermediate Me2NCOCHNH, which subsequently decomposes into dimethyl formamide (HCONMe2), CO, Me2NH and HCN. This intermediate was detected by matrix isolation IR spectroscopy, and its identity confirmed both by a molecular orbital calculation of its IR spectrum, and by the temperature dependence and distribution of products in the PES and IR studies. Mechanisms are proposed for the formation and decomposition of all the products observed in these three systems, based on the experimental evidence and the results of supporting molecular orbital calculations.

Diniz, M. S., I. Peres, I. Magalhães-Antoine, J. Falla, and J. C. Pihan. "Estrogenic effects in crucian carp (Carassius carassius) exposed to treated sewage effluent." Ecotoxicology and Environmental Safety. 62 (2005): 427-435. AbstractWebsite
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Carvalho, AL, VMR Pires, TM Gloster, JP Turkenburg, JAM Prates, LMA Ferreira, MJ Romao, GJ Davies, CMGA Fontes, and HJ Gilbert. "Insights into the structural determinants of cohesin dockerin specificity revealed by the crystal structure of the type II cohesin from Clostridium thermocellum SdbA." Journal of Molecular Biology. 349 (2005): 909-915. Abstract
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Gil, P., J. Henriques, António Dourado, and H. Duarte-Ramos. "Order Estimation in Affine State-Space Neural Networks." 2005 IEEE Mid-Summer Workshop on Soft Computing in Industrial Applications. n/a 2005. Abstract
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Chilibon, I., J. Marat-Mendes, R. Igreja, and C. J. Dias. "Ultrasound role in sol-gel processing of PbTiO(3) ceramics." Journal of Optoelectronics and Advanced Materials. 7 (2005): 2727-2735. Abstract
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Chilibon, I., J. Marat-Mendes, R. Igreja, and C. J. Dias. "Ultrasound role in sol-gel processing of PbTiO(3) ceramics." Journal of Optoelectronics and Advanced Materials. 7 (2005): 2727-2735. Abstract
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Santos, J. P., F. Parente, S. Boucard, and J. P. Desclaux. "X-ray energies of circular transitions and electron screening in kaonic atoms." Physical Review A. 71 (2005): 032501 EP -. AbstractWebsite

The QED contribution to the energies of the circular (n, = n–1), 2n13, transitions have been calculated for several kaonic atoms throughout the periodic table, using the current world-average kaon mass. Calculations were done in the framework of the Klein-Gordon equation, with finite nuclear size, finite particle size, and all-order Uelhing vacuum polarization corrections, as well as Källén and Sabry and Wichmann and Kroll corrections. These energy level values are compared with other computed values. The circular transition energies are compared with available measured and theoretical transition energies. Electron screening is evaluated using a Dirac-Fock model for the electronic part of the wave function. The effect of electronic wave-function correlation is evaluated.Exo

Santos, J. P., F. Parente, S. Boucard, P. Indelicato, and J. P. Desclaux. "X-ray energies of circular transitions and electrons screening in kaonic atoms." Physical Review A. 71 (2005): 032501. AbstractWebsite
The QED contribution to the energies of the circular (n, = n–1), 2n13, transitions have been calculated for several kaonic atoms throughout the periodic table, using the current world-average kaon mass. Calculations were done in the framework of the Klein-Gordon equation, with finite nuclear size, finite particle size, and all-order Uelhing vacuum polarization corrections, as well as Källén and Sabry and Wichmann and Kroll corrections. These energy level values are compared with other computed values. The circular transition energies are compared with available measured and theoretical transition energies. Electron screening is evaluated using a Dirac-Fock model for the electronic part of the wave function. The effect of electronic wave-function correlation is evaluated.
Duarte, A. R. C., L. E. Anderson, C. M. M. Duarte, and S. G. Kazarian. "{A comparison between gravimetric and in situ spectroscopic methods to measure the sorption of CO{\textless}inf{\textgreater}2{\textless}/inf{\textgreater} in a biocompatible polymer}." Journal of Supercritical Fluids. 36 (2005). Abstract

In situ ATR-IR spectroscopy was used to simultaneously measure the sorption and swelling of carbon dioxide at high pressures in a biocompatible acrylate copolymer poly(methylmethacrylate-co-ethylhexylacrylate-co- ethyleneglycoldimethacrylate), P(MMA-EHA-EGDMA). The $ν$ 3 band of CO 2 dissolved in the polymer (at 2335 cm -1 ) was used to calculate the sorption data and the polymer swelling was determined by analyzing the changes in the absorbance of the $ν$(CO) band (at 1730 cm -1 ) of the polymer. Transmission spectroscopy in the near-IR region was also used to study the sorption of CO 2 in the polymer using combinational and overtone bands. The experiments were carried out in a pressure range of 2.0-12.0 MPa and in a temperature range of 27-40 °C. The data for CO 2 sorption in this polymer obtained by in situ spectroscopic methods have been compared to the data obtained by the gravimetric technique. © 2005 Elsevier B.V. All rights reserved.

Liu, Hua Rong, Pedro T. Gomes, Sandra I. Costa, Teresa M. Duarte, R. Branquinho, Anabela C. Fernandes, James C. W. Chien, R. P. Singh, and Maria M. Marques. "{Highly active new $\alpha$-diimine nickel catalyst for the polymerization of $\alpha$-olefins}." Journal of Organometallic Chemistry. 690 (2005): 1314-1323. Abstract

A new silylated $\alpha$-diimine ligand, bis[N,N′-(4-tert-butyl- diphenylsilyl-2,6-diisopropylphenyl)imino]acenaphthene 3, and its corresponding Ni(II) complex, {\{}bis[N,N′-(4-tert-butyl-diphenylsilyl-2,6- diisopropylphenyl)imino]acenaphthene{\}}dibromonickel 4, have been synthesized and characterized. The crystal structures of 3 and 4 were determined by X-ray crystallography. In the solid state, complex 4 is a dimer with two bridging Br ligands linking the two nickel centers, which have square pyramidal geometries. Complex 4, activated either by diethylaluminum chloride (DEAC) or methylaluminoxane (MAO) produces very active catalyst systems for the polymerization of ethylene and moderately active for the polymerization of propylene. The activity values are in the order of magnitude of 107 g PE (mol Ni [E] h)-1 for the polymerization of ethylene and of 105 g PP (mol Ni [P] h)-1 for the polymerization of propylene. NMR analysis shows that branched polyethylenes (PE) are obtained at room or higher temperatures and almost linear PE is obtained at 0°C with 4/DEAC. © 2004 Elsevier B.V. All rights reserved.

Duarte, Ana Rita C., Susana Santiago, Hermínio C. {De Sousa}, and Catarina M. M. Duarte. "{Solubility of acetazolamide in supercritical carbon dioxide in the presence of ethanol as a cosolvent}." Journal of Chemical and Engineering Data. 50 (2005): 216-220. Abstract

Equilibrium solubility of acetazolamide, a carbonic-anhydrase inhibitor, in supercritical carbon dioxide in the presence of a cosolvent was measured by a static analytical method for three mole fractions of ethanol (5, 7.5, and 10) {%} at 313.0 K from (13.0 to 21.0) MPa and at 323.0 K from (13.0 to 21.0) MPa for a mole fraction of 5{%} ethanol The presence of a cosolvent (ethanol) was essential for the solubilization of the bioactive compound in supercritical carbon dioxide. The results obtained are useful for the design of supercritical processes with this drug. Experimental solubility data were correlated with two enhanced density-based models (Chrastil, I. Solubility of Solids in Supercritical Gases. J. Phys. Chem. 1982, 86, 3016-3021; Santiago, J. M.; Teja, A. S. The solubility of solids in supercritical fluids. Fluid Phase Equilib. 1999, 158-160, 501-510).

2004
Pauleta, S. R., F. Guerlesquin, C. F. Goodhew, B. Devreese, J. VanBeeumen, AS Pereira, I. Moura, and G. W. Pettigrew. "Paracoccus pantotrophus pseudoazurin is an electron donor to cytochrome c peroxidase." Biochemistry. 43 (2004): 11214-25. AbstractWebsite

The gene for pseudoazurin was isolated from Paracoccus pantotrophus LMD 52.44 and expressed in a heterologous system with a yield of 54.3 mg of pure protein per liter of culture. The gene and protein were shown to be identical to those from P. pantotrophus LMD 82.5. The extinction coefficient of the protein was re-evaluated and was found to be 3.00 mM(-1) cm(-1) at 590 nm. It was confirmed that the oxidized protein is in a weak monomer/dimer equilibrium that is ionic-strength-dependent. The pseudoazurin was shown to be a highly active electron donor to cytochrome c peroxidase, and activity showed an ionic strength dependence consistent with an electrostatic interaction. The pseudoazurin has a very large dipole moment, the vector of which is positioned at the putative electron-transfer site, His81, and is conserved in this position across a wide range of blue copper proteins. Binding of the peroxidase to pseudoazurin causes perturbation of a set of NMR resonances associated with residues on the His81 face, including a ring of lysine residues. These lysines are associated with acidic residues just back from the rim, the resonances of which are also affected by binding to the peroxidase. We propose that these acidic residues moderate the electrostatic influence of the lysines and so ensure that specific charge interactions do not form across the interface with the peroxidase.

Bursakov, SA, OY Gavel, G. Di Rocco, J. Lampreia, J. Calvete, AS Pereira, JJG Moura, and I. Moura. "Antagonists Mo and Cu in a heterometallic cluster present on a novel protein (orange protein) isolated from Desulfovibrio gigas." JOURNAL OF INORGANIC BIOCHEMISTRY. 98 (2004): 833-840. Abstract
An orange-coloured protein (ORP) isolated from Desulfovibrio gigas, a sulphate reducer, has been previously shown by extended X-ray absorption fine structure (EXAFS) to contain a novel mixed-metal sulphide cluster of the type {[}S2MoS2CuS2MoS2] {[}J. Am. Chem. Soc. 122 (2000) 8321]. We report here the purification and the biochemical/spectroscopic characterisation of this novel protein. ORP is a soluble monomeric protein (11.8 kDa). The cluster is non-covalently bound to the polypeptide chain. The presence of a MoS42- moiety in the structure of the cofactor contributes with a quite characteristic UV-Vis spectra, exhibiting an orange colour, with intense absorption peaks at 480 and 338 nm. Pure ORP reveals an Abs(480)/Abs(338) ratio of 0.535. The gene sequence coding for ORP as well as the amino acid sequence was determined. The putative biological function of ORP is discussed. (C) 2003 Elsevier Inc. All rights reserved.
Gil, A. M., I. Duarte, E. Cabrita, BJ Goodfellow, M. Spraul, and R. Kerssebaum. "Exploratory applications of diffusion ordered spectroscopy to liquid foods: an aid towards spectral assignment." Analytica Chimica Acta. 506 (2004): 215-223. Abstract
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MC, Lanca, Neagu ER, Neagu RM, Dias CJ, Marat-Mendes JN, and Das-Gupta DK. "Space charge studies in LDPE using combined isothermal and non-isothermal current measurements." IEEE TRANSACTIONS ON DIELECTRICS AND ELECTRICAL INSULATION. 11 (2004): 25-34. Abstract
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JP, Borges, GODINHO MH, MARTINS AF, Stamatialis DF, D. PMN, and Belgacem MN. "Tensile properties of cellulose fiber reinforced hydroxypropylcellulose films." Polymer Composites. 25 (2004): 102-110. Abstract
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Sampaio De Sousa, A. R., S. Raeissi, A. Aguiar-Ricardo, C. M. M. Duarte, and C. J. Peters. "High pressure phase behavior of the system ethane + orange peel oil." Journal of Supercritical Fluids. 29.1-2 (2004): 59-67. AbstractWebsite
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Casimiro, T., A. Shariati, C. J. Peters, M. N. De Ponte, and A. Aguiar-Ricardo. "Phase behavior studies of a perfluoropolyether in high-pressure carbon dioxide." Fluid Phase Equilibria. 224.2 (2004): 257-261. AbstractWebsite
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Dos Santos Paula, A., J. P. H. G. Canejo, R. J. C. Silva, and FMB Fernandes. "Effect of thermal cycling on the transformation temperatures of a Ni-Ti shape memory alloy." Materials Science Forum. 455-456 (2004): 346-350. AbstractWebsite
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Fortunato, E., V. Assuncao, A. Marques, A. Goncalves, H. Aguas, L. Pereira, I. Ferreira, FMB Fernandes, R. J. C. Silva, R. Martins, and C. Dias. "ZnO : Ga thin films produced by RF sputtering at room temperature: Effect of the power density." Advanced Materials Forum Ii. 455-456 (2004): 12-15. Abstract
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Damásio, {Carlos Augusto Isaac Piló Viegas}, {José Júlio Alves} Alferes, {Pedro Manuel Corrêa Calvente de} Barahona, and {Francisco Moura Castro Ascensão E. de de} Azevedo. "Deductive Diagnosis of Digital Circuits." Artificial Intelligence Applications and Innovations. 2004. 155-165. Abstract
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Damásio, {Carlos Augusto Isaac Piló Viegas}, {José Júlio Alves} Alferes, {Pedro Manuel Corrêa Calvente de} Barahona, and {Francisco Moura Castro Ascensão E. de de} Azevedo. "Deductive Diagnosis of Digital Circuits." IFIP World Computer Congress. 2004. 155-166. Abstract
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Delgado, Manuel, and Vítor H. Fernandes. "Abelian kernels of monoids of order-preserving maps and of some of its extensions." Semigroup Forum. 68 (2004): 335-356.Website
Delgado, Manuel, and Vítor H. Fernandes. "Abelian kernels, solvable monoids and the abelian kernel length of a finite monoid." Semigroups and languages. World Sci. Publ., River Edge, NJ, 2004. 68-85.