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2011
Marques, Filipe J., Carlos A. Coelho, and Barry C. Arnold. "A general near-exact distribution theory for the most common likelihood ratio test statistics used in Multivariate Analysis." Test. 20 (2011): 180-203. Abstract
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Carvalho, H., S. G. Azevedo, S. Duarte, and V. Cruz-Machado. "Green and Lean Paradigms Influence on Sustainable Business Development of Manufacturing Supply Chains." International Journal of Green Computing. 2 (2011): 45-62. AbstractWebsite
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Canejo, João P., P. Brogueira, Paulo Ivo Cortez Teixeira, G. Feio, E. M. Terentjev, and M. H. Godinho. "Hélices e Espirais em Micro e Nanofibras Celulósicas." Ciência & Tecnologia dos Materiais. 23.3-4 (2011): 34-41. Abstract
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Palma, Angelina S., Yan Liu, Robert A. Childs, Colin Herbert, Denong Wang, Wengang Chai, and Ten Feizi. "The human epithelial carcinoma antigen recognized by monoclonal antibody AE3 is expressed on a sulfoglycolipid in addition to neoplastic mucins." Biochemical and Biophysical Research Communications. 408 (2011): 548-552. Abstract
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de Freitas, J., I. Moldovan, and C. Cismaşiu. "Hybrid-Trefftz displacement element for poroelastic media." Computational Mechanics (2011): 1-15. AbstractWebsite

The elastodynamic response of saturated poroelastic media is modelled approximating independently the solid and seepage displacements in the domain and the force and pressure components on the boundary of the element. The domain and boundary approximation bases are used to enforce on average the dynamic equilibrium and the displacement continuity conditions, respectively. The resulting solving system is Hermitian, except for the damping term, and its coefficients are defined by boundary integral expressions as a Trefftz basis is used to set up the domain approximation. This basis is taken from the solution set of the governing differential equation and models the free-field elastodynamic response of the medium. This option justifies the relatively high levels of performance that are illustrated with the time domain analysis of unbounded domains.

Pereira, Ricardo, J. Coutinho, A. Carvalho, L. Pereira, L. Rino, VJB Torres, Lu{\'ıs de Almeida, Sergej Filonovich, T. Busani, H. Águas, and others. "Hybridsolar project: hybrid Si-Nanoparticle/polymer layers for solar cell applications." III Annual Meeting of the I3N–Institute of Nanostructures, Nanomodelling and Nanofabrication, 2011. 2011. 10. Abstract
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Azevedo, S. G., H. Carvalho, and V. Cruz-Machado. "The influence of green practices on supply chain performance: A case study approach." Transportation Research Part E: Logistics and Transportation Review. 47 (2011): 850-871. AbstractWebsite

The main objective of this exploratory paper is to investigate the relationships between green practices of supply chain management and supply chain performance. This relationship is investigated in the context of the automotive industry. Five research propositions are suggested and tested with empirical data derived from five case studies taken from the Portuguese automotive supply chain. The data analysis identifies the most important green practices considered by managers, as well as the performance measures that are most appropriate and most widely used as means to evaluate the influence of green practices on supply chain performance. A conceptual model was derived from the data analysis and it can be used to assess the influence of green practices on supply chain performance. This model provides evidence as to which green practices have positive effects on quality, customer satisfaction and efficiency. It also identifies the practices which have negative effects on supply chain performance.

A., Pedrosa, LANÇA M.C., Borges J.P., NEAGU E.R., DIAS C.J., Marat-Mendes, and J.N. "Influence of Polarization on the Bioactivity of Nanopowders of Hydroxyapatite." 14th International Symposium on Electrets. International Symposium on Electrets. 2011. Abstract
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Pinheiro, Carla, Carla Antonio, Maria Fernanda Ortuno, Petre I. Dobrev, Wolfram Hartung, Jane Thomas-Oates, Candido Pinto Ricardo, Radomira Vankova, Manuela M. Chaves, and Julie C. Wilson. "Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses." Journal of Experimental Botany. 62 (2011): 4965-4974. AbstractWebsite

The early (2-4 d) effects of slowly imposed soil water deficit on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance in different organs (leaf blade, stem stele, stem cortex, and root) were evaluated on 23-d-old plants (growth chamber assay). Our work shows that several metabolic adjustments occurred prior to alteration of the plant water status, implying that water deficit is perceived before the change in plant water status. The slow, progressive decline in soil water content started to be visible 3 d after withholding water (3 DAW). The earliest plant changes were associated with organ-specific metabolic responses (particularly in the leaves) and with leaf conductance and only later with plant water status and photosynthetic rate (4 DAW) or photosynthetic capacity (according to the Farquhar model; 6 DAW). Principal component analysis (PCA) of the physiological parameters, the carbohydrate and the hormone levels and their relative values, as well as leaf water-soluble metabolites full scan data (LC-MS/MS), showed separation of the different sampling dates. At 6 DAW classically described stress responses are observed, with plant water status, ABA level, and root hormonal balance contributing to the separation of these samples. Discrimination of earlier stress stages (3 and 4 DAW) is only achieved when the relative levels of indole-3-acetic acid (IAA), cytokinins (Cks), and carbon metabolism (glucose, sucrose, raffinose, and starch levels) are taken into account. Our working hypothesis is that, in addition to single responses (e.g. ABA increase), the combined alterations in hormone and carbohydrate levels play an important role in the stress response mechanism. Response to more advanced stress appears to be associated with a combination of cumulative changes, occurring in several plant organs. The carbohydrate and hormonal balance in the leaf (IAA to bioactive-Cks; soluble sugars to IAA and starch to IAA; relative abundances of the different soluble sugars) flag the initial responses to the slight decrease in soil water availability (10-15% decrease). Further alterations in sucrose to ABA and in raffinose to ABA relative values (in all organs) indicate that soil water availability continues to decrease. Such alterations when associated with changes in the root hormone balance indicate that the stress response is initiated. It is concluded that metabolic balance (e.g. IAA/bioactive Cks, carbohydrates/IAA, sucrose/ABA, raffinose/ABA, ABA/IAA) is relevant in triggering adjustment mechanisms.

Pinheiro, Carla, Carla Antonio, Maria Fernanda Ortuno, Petre I. Dobrev, Wolfram Hartung, Jane Thomas-Oates, Candido Pinto Ricardo, Radomira Vankova, Manuela M. Chaves, and Julie C. Wilson. "Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses." Journal of Experimental Botany. 62 (2011): 4965-4974. AbstractWebsite
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Carvalho, H., and V. Cruz-Machado. "Integrating lean, agile, resilience and green paradigms in supply chain management." Supply Chain Management. Pengzhong Li ed. {InTech}, 2011. 27-48. Abstract
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Cardoso, Alberto, M. & S. Vieira, and P. Gil. "Integration of a Remote and Virtual Control Lab in an Intelligent Tutoring System." REV 2011. n/a 2011. Abstract
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Santos, J. P., A. M. Costa, M. C. Martins, P. Indelicato, and F. Parente. "K X-Ray Energies and Transition Probabilities for He-, Li- and Be-like Praseodymium ions." Journal of Physics: Conference Series. Accepted (2011).
Guimarães, D., M. L. Carvalho, M. Becker, A. von Bohlen, V. Geraldes, I. Rocha, and J. P. Santos. "Lead concentration in feces and urine of exposed rats by X-ray Fluorescence and Electrothermal Atomic Absorption Spectrometry." X-Ray Spectrometry. In press (2011). Abstract
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Antunes, R., F. Coito, and H. Duarte-Ramos. "A Linear Approach towards Modeling Human Behavior." Technological Innovation for Sustainability (2011): 305-314. Abstract
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Alves, M., P. Chicau, H. Matias, J. Passarinho, C. Pinheiro, and C. P. Ricardo. "Metabolic analysis revealed altered amino acid profiles in Lupinus albus organs as a result of boron deficiency." Physiologia Plantarum. 142 (2011): 224-232. AbstractWebsite

We analysed the changes in the metabolites of Lupinus albus organs (leaf-blades, petioles, apexes, hypocotyls and roots) as a consequence of B deficiency. The deficiency did not affect malate concentration and induced only minor changes in the sugar content, suggesting that the carbohydrate metabolism is little affected by the deficiency. Contrarily, marked changes in the content of free amino acids were observed, with some specific variations associated with the different organs. These changes indicate that various aspects of metabolism implicated in the amino acid accumulation were affected by B deficiency. Most of the detected changes appear to have implications with some stress responses or signalling processes. Asparagine and proline that increase in many stresses also accumulated in petioles, apexes and hypocotyls. Accumulation of gamma-aminobutyric acid shunt amino acids, indicative of production of reactive oxygen species, occurs in the same three organs and also the roots. The increase in the branched-chain amino acids, observed in all organs, suggests the involvement of B with the cytoskeleton, whereas glycine decrease in leaf-blades and active growing organs (apexes and roots) could be associated with the proposed role of this amino acids in plant signalling in processes that might be associated with the decreased growth rates observed in B deficiency. Despite the admitted importance of free amino acids in plant metabolism, the available information on this matter is scarce. So our results bring new information concerning the effects of B deficiency in the metabolism of the several L. albus organs.

Alves, M., P. Chicau, H. Matias, J. Passarinho, C. Pinheiro, and C. P. Ricardo. "Metabolic analysis revealed altered amino acid profiles in Lupinus albus organs as a result of boron deficiency." Physiologia Plantarum. 142 (2011): 224-232. AbstractWebsite
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Gil, P., A. Paulo, L. Palma, A. Santos, and Alberto Cardoso. "Model Based Predictive Control over Wireless Sensor and Actuator Networks." The 37th Annual Conference of the IEEE Industrial Electronics Society (IECON 2011). n/a 2011. Abstract
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Garcia-Alvarez, Begona, Roberto Melero, Fernando M. V. Dias, Jose A. M. Prates, Carlos M. G. A. Fontes, Steven P. Smith, Maria Joao Romao, Ana Luisa Carvalho, and Oscar Llorca. "Molecular Architecture and Structural Transitions of a Clostridium thermocellum Mini-Cellulosome." Journal of Molecular Biology. 407 (2011): 571-580. Abstract
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Nunes, G. N. N. V., Alberto Cardoso, A. Santos, and P. Gil. "Multi-agent Topologies over WSANs in the Context of Fault Tolerant Supervision." DoCEIS 2011 - 2nd Edition of the Doctoral Conference on Computing, Electrical and Industrial Systems. n/a 2011. Abstract
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Marques, Filipe J., and Carlos A. Coelho. "The Multi-sample Block-matrix Sphericity Test." AIP Conference Proceedings. Vol. 1389. AIP, 2011. 1479-1482. Abstract
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Folgosa, F., C. M. Cordas, J. A. Santos, AS Pereira, JJG Moura, P. Tavares, and I. Moura. "New spectroscopic and electrochemical insights on a class I superoxide reductase: evidence for an intramolecular electron-transfer pathway." Biochemical Journal. 438 (2011): 485-494. AbstractWebsite

SORs (superoxide reductases) are enzymes involved in bacterial resistance to reactive oxygen species, catalysing the reduction of superoxide anions to hydrogen peroxide. So far three structural classes have been identified. Class I enzymes have two ironcentre-containing domains. Most studies have focused on the catalytic iron site (centre II), yet the role of centre I is poorly understood. The possible roles of this iron site were approached by an integrated study using both classical and fast kinetic measurements, as well as direct electrochemistry. A new heterometallic form of the protein with a zinc-substituted centre I, maintaining the iron active-site centre II, was obtained, resulting in a stable derivative useful for comparison with the native all-iron from. Second-order rate constants for the electron transfer between reduced rubredoxin and the different SOR forms were determined to be 2.8 x 10(7) M(-1) . s(-1) and 1.3 x 10(6) M(-1) . s(-1) for SOR(Fe(IIII)-Fe(II)) and for SOR(Fe(IIII)-Fe(III)) forms respectively, and 3.2 x 10(6) M(-1) s(-1) for the SOR(Zn(II)-Fe(III)) form. The results obtained seem to indicate that centre I transfers electrons from the putative physiological donor rubredoxin to the catalytic active iron site (intramolecular process). In addition, electrochemical results show that conformational changes are associated with the redox state of centre I, which may enable a faster catalytic response towards superoxide anion. The apparent rate constants calculated for the SOR-mediated electron transfer also support this observation.

Coelho, Carlos A., and Filipe J. Marques. "On the Exact, Asymptotic and Near-exact Distributions for the Likelihood Ratio Statistics to Test Equality of Several Exponential Distributions." AIP Conference Proceedings. Vol. 1389. AIP, 2011. 1471-1474. Abstract
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Moutinho, Filipe, Lu{\'ı}s Gomes, Paulo E. S. Barbosa, João Paulo Barros, Franklin Ramalho, Jorge Figueiredo, Anikó Costa, and André Monteiro. "Petri Net Based Specification and Verification of Globally-Asynchronous-Locally-Synchronous System." Technological Innovation for Sustainability - Second {IFIP} {WG} 5.5/SOCOLNET Doctoral Conference on Computing, Electrical and Industrial Systems, DoCEIS 2011, Costa de Caparica, Portugal, February 21-23, 2011. Proceedings. 2011. 237-245. Abstract
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