Publications

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Submitted
Teixeira, A. P., J. M. L. Dias, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Macroscopic control of intracellular fluxes: application to mammalian cell cultures}." {NEW BIOTECHNOLOGY}. {25} (Submitted): {S332}. Abstract
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Carinhas, Nuno, Aaron Mark Robitaille, Suzette Moes, Manuel Jose Teixeira Carrondo, Paul Jenoe, Rui Oliveira, and Paula Marques Alves. "{Quantitative Proteomics of Spodoptera frugiperda Cells during Growth and Baculovirus Infection}." {PLOS ONE}. {6} (Submitted). Abstract
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Freitas, F., C. A. V. Torres, V. Alves, M. Cruz, R. Oliveira, and M. A. M. Reis. "{Conversion of glycerol into a new high-value fucose-containing bacterial exopolysaccharide}." {JOURNAL OF BIOTECHNOLOGY}. {150} (Submitted): {S88}. Abstract
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Torres, Cristiana A. V., Filomena Freitas, Vtor D. Alves, Madalena Cruz, Rui Oliveira, and Maria A. M. Reis. "{New Microbial Fucose-Containing Polysaccharide from Glycerol byproduct: Rheological Studies}." {JOURNAL OF BIOTECHNOLOGY}. {150} (Submitted): {S565}. Abstract
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Teixeira, A. P., R. Oliveira, P. M. Alves, and M. J. T. Carrondo. "{Advances in on-line monitoring and control of mammalian cell cultures: Supporting the PAT initiative}." {BIOTECHNOLOGY ADVANCES}. {27} (Submitted): {726-732}. Abstract
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Ferreira, Ana R., Joao M. L. Dias, Ana P. Teixeira, Nuno Carinhas, Rui M. C. Portela, Ines A. Isidro, Moritz von Stosch, and Rui Oliveira. "{Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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Teixeira, Ana P., Carla A. M. Portugal, Nuno Carinhas, Joao M. L. Dias, Joao P. Crespo, Paula M. Alves, M. J. T. Carrondo, and Rui Oliveira. "{In Situ 2D Fluorometry and Chemometric Monitoring of Mammalian Cell Cultures}." {BIOTECHNOLOGY AND BIOENGINEERING}. {102} (Submitted): {1098-1106}. Abstract
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Teixeira, Ana P., Joao M. L. Dias, Nuno Carinhas, Marcos Sousa, Joao J. Clemente, Antonio E. Cunha, Moritz von Stosch, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Cell functional enviromics: Unravelling the function of environmental factors}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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Carinhas, Nuno, Rui Oliveira, Paula Marques Alves, Manuel J. T. Carrondo, and Ana P. Teixeira. "{Systems biotechnology of animal cells: the road to prediction}." {TRENDS IN BIOTECHNOLOGY}. {30} (Submitted): {377-385}. Abstract
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Alves, Vitor D., Filomena Freitas, Cristiana A. V. Torres, Madalena Cruz, Rodolfo Marques, Christian Grandfils, M. P. Goncalves, Rui Oliveira, and Maria A. M. Reis. "{Rheological and morphological characterization of the culture broth during exopolysaccharide production by Enterobacter sp.}." {CARBOHYDRATE POLYMERS}. {81} (Submitted): {758-764}. Abstract
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Simon, Levente L., Hajnalka Pataki, Gyoergy Marosi, Fabian Meemken, Konrad Hungerbuehler, Alfons Baiker, Srinivas Tummala, Brian Glennon, Martin Kuentz, Gerry Steele, Herman J. M. Kramer, James W. Rydzak, Zengping Chen, Julian Morris, Francois Kjell, Ravendra Singh, Rafiqul Gani, Krist V. Gernaey, Marjatta Louhi-Kultanen, John O'Reilly, Niklas Sandler, Osmo Antikainen, Jouko Yliruusi, Patrick Frohberg, Joachim Ulrich, Richard D. Braatz, Tom Leyssens, Moritz von Stosch, Rui Oliveira, Reginald B. H. Tan, Huiquan Wu, Mansoor Khan, Des O'Grady, Anjan Pandey, Remko Westra, Emmanuel Delle-Case, Detlef Pape, Daniele Angelosante, Yannick Maret, Olivier Steiger, Miklos Lenner, Kaoutar Abbou-Oucherif, Zoltan K. Nagy, James D. Litster, Vamsi Krishna Kamaraju, and Min-Sen Chiu. "{Assessment of Recent Process Analytical Technology (PAT) Trends: A Multiauthor Review}." {ORGANIC PROCESS RESEARCH & DEVELOPMENT}. {19} (Submitted): {3-62}. Abstract
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Teixeira, A. P., J. J. Clemente, A. E. Cunha, M. J. T. Carrondo, and R. Oliveira. "{Bioprocess iterative batch-to-batch optimization based on hybrid parametric/nonparametric models}." {BIOTECHNOLOGY PROGRESS}. {22} (Submitted): {247-258}. Abstract
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Teixeira, Ana P., Carlos Alves, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control}." {BMC BIOINFORMATICS}. {8} (Submitted). Abstract
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Teixeira, Ana P., Sonia Sa Santos, Nuno Carinhas, Rui Oliveira, and Paula M. Alves. "{Combining metabolic flux analysis tools and C-13 NMR to estimate intracellular fluxes of cultured astrocytes}." {NEUROCHEMISTRY INTERNATIONAL}. {52} (Submitted): {478-486}. Abstract
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Carinhas, Nuno, Vicente Bernal, Ana P. Teixeira, Manuel J. T. Carrondo, Paula M. Alves, and Rui Oliveira. "{Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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Teixeira, Ana P., Tiago M. Duarte, Rui Oliveira, Manuel J. T. Carrondo, and Paula M. Alves. "{High-throughput analysis of animal cell cultures using two-dimensional fluorometry}." {JOURNAL OF BIOTECHNOLOGY}. {151} (Submitted): {255-260}. Abstract
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Carrondo, Manuel J. T., Paula M. Alves, Nuno Carinhas, Jarka Glassey, Friedemann Hesse, Otto-Wilhelm Merten, Martina Micheletti, Thomas Noll, Rui Oliveira, Udo Reichl, Arne Staby, Ana P. Teixeira, Henry Weichert, and Carl-Fredrik Mandenius. "{How can measurement, monitoring, modeling and control advance cell culture in industrial biotechnology?}." {BIOTECHNOLOGY JOURNAL}. {7} (Submitted): {1522-1529}. Abstract
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Torres, Cristiana A. V., Rodolfo Marques, Silvia Antunes, Vitor D. Alves, Isabel Sousa, Ana Maria Ramos, Rui Oliveira, Filomena Freitas, and Maria A. M. Reis. "{Kinetics of production and characterization of the fucose-containing exopolysaccharide from Enterobacter A47}." {JOURNAL OF BIOTECHNOLOGY}. {156} (Submitted): {261-267}. Abstract
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Teixeira, Ana P., Nuno Carinhas, Jodo M. L. Dias, Pedro Cruz, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Hybrid semi-parametric mathematical systems: Bridging the gap between systems biology and process engineering}." {JOURNAL OF BIOTECHNOLOGY}. {132} (Submitted): {418-425}. Abstract
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Teixeira, A., A. E. Cunha, J. J. Clemente, JL Moreira, HJ Cruz, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Modelling and optimization of a recombinant BHK-21 cultivation process using hybrid grey-box systems}." {JOURNAL OF BIOTECHNOLOGY}. {118} (Submitted): {290-303}. Abstract
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Goerke, Aaron R., Johannes Scholten, Nedim Emil Altaras, Ana Teixeira, Joao Clemente, Antonio Cunha, Rui Oliveira, and John G. Aunins. "{BIOT 328-Fast development of Pichia pastoris cultures based on hybrid semiparametric process control}." {ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY}. {236} (Submitted). Abstract
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Alves, Vitor D., Filomena Freitas, Cristiana A. V. Torres, Madalena Cruz, Rodolfo Marques, Christian Grandfils, M. P. Goncalves, Rui Oliveira, and Maria A. M. Reis. "{Rheological and morphological characterization of the culture broth during exopolysaccharide production by Enterobacter sp. (vol 80, pg 325, 2010)}." {CARBOHYDRATE POLYMERS}. {80} (Submitted): {325}. Abstract
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Isidro, Ines A., Ana R. Ferreira, Joao J. Clemente, Antonio E. Cunha, Joao M. L. Dias, and Rui Oliveira. "{Design of Pathway-Level Bioprocess Monitoring and Control Strategies Supported by Metabolic Networks}." {MEASUREMENT, MONITORING, MODELLING AND CONTROL OF BIOPROCESSES}. Eds. CF {Mandenius, and NJ} TitchenerHooker. Vol. {132}. {Advances in Biochemical Engineering-Biotechnology}, {132}. Submitted. {193-215}. Abstract
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Teixeira, A., A. Cunha, J. Clemente, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Dynamic modelling and optimisation of a mammalian cells process using hybrid grey-box systems}." {Adaptive and Natural Computing Algorithms}. Eds. B. {Ribeiro, RF Albrecht, A. Dobnikar, DW Pearson, and NC} Steele. {SPRINGER COMPUTER SCIENCE}. Submitted. {296-299}. Abstract
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Teixeira, A., C. Alves, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Hybrid metabolic flux analysis/artificial neural network modeling of bioprocesses}." {HIS 2005: 5th International Conference on Hybrid Intelligent Systems, Proceedings}. Eds. N. {Nedjah, LM Mourelle, MMB Vellasco, A. Abraham, and M. } Koppen. {Operador Nacl Sistema Eletr; Coordenac Aperfeicoament Pessoal Nivel Super; Brazilian Comp Soc; Brazilian Soc Automat; IEEE Syst Man & Cygernet Soc; Int Fuzzy Syst Assoc; European Neural Network Soc; European Soc Fuzzy Log & Technol; World Federat Soft Co, Submitted. {411-416}. Abstract
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