Publications

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Journal Article
Oliveira, R., J. J. Clemente, A. E. Cunha, and M. J. T. Carrondo. "{Adaptive dissolved oxygen control through the glycerol feeding in a recombinant Pichia pastoris cultivation in conditions of oxygen transfer limitation}." {JOURNAL OF BIOTECHNOLOGY}. {116} (Submitted): {35-50}. Abstract
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Teixeira, A. P., R. Oliveira, P. M. Alves, and M. J. T. Carrondo. "{Advances in on-line monitoring and control of mammalian cell cultures: Supporting the PAT initiative}." {BIOTECHNOLOGY ADVANCES}. {27} (Submitted): {726-732}. Abstract
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Isidro, Ines A., Ana R. Ferreira, Joao J. Clemente, Antonio E. Cunha, and Rui Oliveira. "{Analysis of culture media screening data by projection to latent pathways: The case of Pichia pastoris X-33}." {JOURNAL OF BIOTECHNOLOGY}. {217} (Submitted): {82-89}. Abstract
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Santos, J. L. C., A. M. Hidalgo, R. Oliveira, S. Velizarov, and J. G. Crespo. "{Analysis of solvent flux through nanofiltration membranes by mechanistic, chemometric and hybrid modelling}." {JOURNAL OF MEMBRANE SCIENCE}. {300} (Submitted): {191-204}. Abstract
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Ferreira, A. R., F. Ataide, M. von Stosch, J. M. L. Dias, J. J. Clemente, A. E. Cunha, and R. Oliveira. "{Application of adaptive DO-stat feeding control to Pichia pastoris X33 cultures expressing a single chain antibody fragment (scFv)}." {BIOPROCESS AND BIOSYSTEMS ENGINEERING}. {35} (Submitted): {1603-1614}. Abstract
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Simon, Levente L., Hajnalka Pataki, Gyoergy Marosi, Fabian Meemken, Konrad Hungerbuehler, Alfons Baiker, Srinivas Tummala, Brian Glennon, Martin Kuentz, Gerry Steele, Herman J. M. Kramer, James W. Rydzak, Zengping Chen, Julian Morris, Francois Kjell, Ravendra Singh, Rafiqul Gani, Krist V. Gernaey, Marjatta Louhi-Kultanen, John O'Reilly, Niklas Sandler, Osmo Antikainen, Jouko Yliruusi, Patrick Frohberg, Joachim Ulrich, Richard D. Braatz, Tom Leyssens, Moritz von Stosch, Rui Oliveira, Reginald B. H. Tan, Huiquan Wu, Mansoor Khan, Des O'Grady, Anjan Pandey, Remko Westra, Emmanuel Delle-Case, Detlef Pape, Daniele Angelosante, Yannick Maret, Olivier Steiger, Miklos Lenner, Kaoutar Abbou-Oucherif, Zoltan K. Nagy, James D. Litster, Vamsi Krishna Kamaraju, and Min-Sen Chiu. "{Assessment of Recent Process Analytical Technology (PAT) Trends: A Multiauthor Review}." {ORGANIC PROCESS RESEARCH & DEVELOPMENT}. {19} (Submitted): {3-62}. Abstract
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Carrondo, Manuel, Nuno Carinhas, Vicente Bernal, Cristina Peixoto, Rui Oliveira, and Paula Alves. "{Baculovirus for gene therapy: use of metabolomics for production and membranes for purification}." {HUMAN GENE THERAPY}. {20} (Submitted): {1401-1402}. Abstract
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Carinhas, Nuno, Vicente Bernal, Adriana Y. Yokomizo, Manuel J. T. Carrondo, Rui Oliveira, and Paula M. Alves. "{Baculovirus production for gene therapy: the role of cell density, multiplicity of infection and medium exchange}." {APPLIED MICROBIOLOGY AND BIOTECHNOLOGY}. {81} (Submitted): {1041-1049}. Abstract
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Teixeira, A. P., J. J. Clemente, A. E. Cunha, M. J. T. Carrondo, and R. Oliveira. "{Bioprocess iterative batch-to-batch optimization based on hybrid parametric/nonparametric models}." {BIOTECHNOLOGY PROGRESS}. {22} (Submitted): {247-258}. Abstract
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Goerke, Aaron R., Johannes Scholten, Nedim Emil Altaras, Ana Teixeira, Joao Clemente, Antonio Cunha, Rui Oliveira, and John G. Aunins. "{BIOT 328-Fast development of Pichia pastoris cultures based on hybrid semiparametric process control}." {ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY}. {236} (Submitted). Abstract
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Teixeira, Ana P., Joao M. L. Dias, Nuno Carinhas, Marcos Sousa, Joao J. Clemente, Antonio E. Cunha, Moritz von Stosch, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Cell functional enviromics: Unravelling the function of environmental factors}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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Freitas, Filomena, Vitor D. Alves, Joana Pais, Nuno Costa, Cristina Oliveira, Luis Mafra, Loic Hilliou, Rui Oliveira, and Maria A. M. Reis. "{Characterization of an extracellular polysaccharide produced by a Pseudomonas strain grown on glycerol}." {BIORESOURCE TECHNOLOGY}. {100} (Submitted): {859-865}. Abstract
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Teixeira, Ana P., Sonia Sa Santos, Nuno Carinhas, Rui Oliveira, and Paula M. Alves. "{Combining metabolic flux analysis tools and C-13 NMR to estimate intracellular fluxes of cultured astrocytes}." {NEUROCHEMISTRY INTERNATIONAL}. {52} (Submitted): {478-486}. Abstract
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Freitas, F., C. A. V. Torres, V. Alves, M. Cruz, R. Oliveira, and M. A. M. Reis. "{Conversion of glycerol into a new high-value fucose-containing bacterial exopolysaccharide}." {JOURNAL OF BIOTECHNOLOGY}. {150} (Submitted): {S88}. Abstract
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Alves, Vitor D., Filomena Freitas, Nuno Costa, Monica Carvalheira, Rui Oliveira, Maria P. Goncalves, and Maria A. M. Reis. "{Effect of temperature on the dynamic and steady-shear rheology of a new microbial extracellular polysaccharide produced from glycerol byproduct}." {CARBOHYDRATE POLYMERS}. {79} (Submitted): {981-988}. Abstract
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Freitas, Filomena, Vitor D. Alves, Monica Carvalheira, Nuno Costa, Rui Oliveira, and Maria A. M. Reis. "{Emulsifying behaviour and rheological properties of the extracellular polysaccharide produced by Pseudomonas oleovorans grown on glycerol byproduct}." {CARBOHYDRATE POLYMERS}. {78} (Submitted): {549-556}. Abstract
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Roldao, Antonio, Rui Oliveira, Manuel J. T. Carrondo, and Paula M. Alves. "{Error assessment in recombinant baculovirus titration: Evaluation of different methods}." {JOURNAL OF VIROLOGICAL METHODS}. {159} (Submitted): {69-80}. Abstract
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Ferreira, A. R., J. M. L. Dias, M. von Stosch, J. Clemente, A. E. Cunha, and Rui Oliveira. "{Fast development of Pichia pastoris GS115 Mut(+) cultures employing batch-to-batch control and hybrid semi-parametric modeling}." {BIOPROCESS AND BIOSYSTEMS ENGINEERING}. {37} (Submitted): {629-639}. Abstract
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Teixeira, Ana P., Tiago M. Duarte, Rui Oliveira, Manuel J. T. Carrondo, and Paula M. Alves. "{High-throughput analysis of animal cell cultures using two-dimensional fluorometry}." {JOURNAL OF BIOTECHNOLOGY}. {151} (Submitted): {255-260}. Abstract
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Carrondo, Manuel J. T., Paula M. Alves, Nuno Carinhas, Jarka Glassey, Friedemann Hesse, Otto-Wilhelm Merten, Martina Micheletti, Thomas Noll, Rui Oliveira, Udo Reichl, Arne Staby, Ana P. Teixeira, Henry Weichert, and Carl-Fredrik Mandenius. "{How can measurement, monitoring, modeling and control advance cell culture in industrial biotechnology?}." {BIOTECHNOLOGY JOURNAL}. {7} (Submitted): {1522-1529}. Abstract
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Teixeira, Ana P., Carlos Alves, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control}." {BMC BIOINFORMATICS}. {8} (Submitted). Abstract
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Carinhas, Nuno, Vicente Bernal, Ana P. Teixeira, Manuel J. T. Carrondo, Paula M. Alves, and Rui Oliveira. "{Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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Ricardo, Ana R., Rui Oliveira, Svetlozar Velizarov, Maria A. M. Reis, and Joao G. Crespo. "{Hybrid modeling of counterion mass transfer in a membrane-supported biofilm reactor}." {BIOCHEMICAL ENGINEERING JOURNAL}. {62} (Submitted): {22-33}. Abstract
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Teixeira, Ana P., Nuno Carinhas, Jodo M. L. Dias, Pedro Cruz, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Hybrid semi-parametric mathematical systems: Bridging the gap between systems biology and process engineering}." {JOURNAL OF BIOTECHNOLOGY}. {132} (Submitted): {418-425}. Abstract
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Castanheiro, JE, I. M. Fonseca, A. M. Ramos, R. Oliveira, and J. Vital. "{Hydration of alpha-pinene over molybdophosphoric acid immobilized in hydrophobically modified PVA membranes}." {CATALYSIS TODAY}. {104} (Submitted): {296-304}. Abstract
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