Rui Oliveira

Isidro, Ines A., Ana R. Ferreira, Joao J. Clemente, Antonio E. Cunha, Joao M. L. Dias, and Rui Oliveira. "{Design of Pathway-Level Bioprocess Monitoring and Control Strategies Supported by Metabolic Networks}." {MEASUREMENT, MONITORING, MODELLING AND CONTROL OF BIOPROCESSES}. Eds. CF {Mandenius, and NJ} TitchenerHooker. Vol. {132}. {Advances in Biochemical Engineering-Biotechnology}, {132}. Submitted. {193-215}. Abstract

Oliveira, R., A. Cunha, J. Clemente, and M. J. T. Carrondo. "{Adaptive DO-based control of substrate feeding in high cell density cultures operated under oxygen transfer limitation}." {Adaptive and Natural Computing Algorithms}. Eds. B. {Ribeiro, RF Albrecht, A. Dobnikar, DW Pearson, and NC} Steele. {SPRINGER COMPUTER SCIENCE}. Submitted. {300-303}. Abstract

Freitas, F., J. Pais, V. D. Alves, M. Carvalheira, N. Costa, R. Oliveira, and M. A. M. Reis. "{Conversion of Glycerol-rich Product (GRP) into Biopolymers}." {CLEAN TECHNOLOGY 2008: BIO ENERGY, RENEWABLES, GREEN BUILDING, SMART GRID, STORAGE, AND WATER}. Eds. M. {Laudon, B. Romanowicz, and DL} Laird. {Clean Technol & Sustainable Ind Org; Greenberg Traurig LLP; Jackson Walker LLP; IDA Ireland; Opportunity Houston; Alston & Bird LLP; K & L Gates; Buchanan Ingersoll & Rooney PC; Foley & Larder, LLP; Pacific Crest Securities; RockPort Capital Partners; Fi, Submitted. {552-553}. Abstract

Teixeira, A., A. Cunha, J. Clemente, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Dynamic modelling and optimisation of a mammalian cells process using hybrid grey-box systems}." {Adaptive and Natural Computing Algorithms}. Eds. B. {Ribeiro, RF Albrecht, A. Dobnikar, DW Pearson, and NC} Steele. {SPRINGER COMPUTER SCIENCE}. Submitted. {296-299}. Abstract

Teixeira, A., C. Alves, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Hybrid metabolic flux analysis/artificial neural network modeling of bioprocesses}." {HIS 2005: 5th International Conference on Hybrid Intelligent Systems, Proceedings}. Eds. N. {Nedjah, LM Mourelle, MMB Vellasco, A. Abraham, and M. } Koppen. {Operador Nacl Sistema Eletr; Coordenac Aperfeicoament Pessoal Nivel Super; Brazilian Comp Soc; Brazilian Soc Automat; IEEE Syst Man & Cygernet Soc; Int Fuzzy Syst Assoc; European Neural Network Soc; European Soc Fuzzy Log & Technol; World Federat Soft Co, Submitted. {411-416}. Abstract

Teixeira, A., C. M. L. Alves, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Hybrid metabolic flux analysis/data-driven modelling of bioprocesses}." {16TH EUROPEAN SYMPOSIUM ON COMPUTER AIDED PROCESS ENGINEERING AND 9TH INTERNATIONAL SYMPOSIUM ON PROCESS SYSTEMS ENGINEERING}. Eds. W. {Marquardt, and C. } Pantelides. Vol. {21}. {Computer-Aided Chemical Engineering}, {21}. Submitted. {1667-1672}. Abstract

Oliveira, R., J. J. Clemente, A. E. Cunha, and M. J. T. Carrondo. "{Adaptive dissolved oxygen control through the glycerol feeding in a recombinant Pichia pastoris cultivation in conditions of oxygen transfer limitation}." {JOURNAL OF BIOTECHNOLOGY}. {116} (Submitted): {35-50}. Abstract

Teixeira, A. P., R. Oliveira, P. M. Alves, and M. J. T. Carrondo. "{Advances in on-line monitoring and control of mammalian cell cultures: Supporting the PAT initiative}." {BIOTECHNOLOGY ADVANCES}. {27} (Submitted): {726-732}. Abstract

Isidro, Ines A., Ana R. Ferreira, Joao J. Clemente, Antonio E. Cunha, and Rui Oliveira. "{Analysis of culture media screening data by projection to latent pathways: The case of Pichia pastoris X-33}." {JOURNAL OF BIOTECHNOLOGY}. {217} (Submitted): {82-89}. Abstract

Santos, J. L. C., A. M. Hidalgo, R. Oliveira, S. Velizarov, and J. G. Crespo. "{Analysis of solvent flux through nanofiltration membranes by mechanistic, chemometric and hybrid modelling}." {JOURNAL OF MEMBRANE SCIENCE}. {300} (Submitted): {191-204}. Abstract

Ferreira, A. R., F. Ataide, M. von Stosch, J. M. L. Dias, J. J. Clemente, A. E. Cunha, and R. Oliveira. "{Application of adaptive DO-stat feeding control to Pichia pastoris X33 cultures expressing a single chain antibody fragment (scFv)}." {BIOPROCESS AND BIOSYSTEMS ENGINEERING}. {35} (Submitted): {1603-1614}. Abstract

Simon, Levente L., Hajnalka Pataki, Gyoergy Marosi, Fabian Meemken, Konrad Hungerbuehler, Alfons Baiker, Srinivas Tummala, Brian Glennon, Martin Kuentz, Gerry Steele, Herman J. M. Kramer, James W. Rydzak, Zengping Chen, Julian Morris, Francois Kjell, Ravendra Singh, Rafiqul Gani, Krist V. Gernaey, Marjatta Louhi-Kultanen, John O'Reilly, Niklas Sandler, Osmo Antikainen, Jouko Yliruusi, Patrick Frohberg, Joachim Ulrich, Richard D. Braatz, Tom Leyssens, Moritz von Stosch, Rui Oliveira, Reginald B. H. Tan, Huiquan Wu, Mansoor Khan, Des O'Grady, Anjan Pandey, Remko Westra, Emmanuel Delle-Case, Detlef Pape, Daniele Angelosante, Yannick Maret, Olivier Steiger, Miklos Lenner, Kaoutar Abbou-Oucherif, Zoltan K. Nagy, James D. Litster, Vamsi Krishna Kamaraju, and Min-Sen Chiu. "{Assessment of Recent Process Analytical Technology (PAT) Trends: A Multiauthor Review}." {ORGANIC PROCESS RESEARCH & DEVELOPMENT}. {19} (Submitted): {3-62}. Abstract

Carrondo, Manuel, Nuno Carinhas, Vicente Bernal, Cristina Peixoto, Rui Oliveira, and Paula Alves. "{Baculovirus for gene therapy: use of metabolomics for production and membranes for purification}." {HUMAN GENE THERAPY}. {20} (Submitted): {1401-1402}. Abstract

Carinhas, Nuno, Vicente Bernal, Adriana Y. Yokomizo, Manuel J. T. Carrondo, Rui Oliveira, and Paula M. Alves. "{Baculovirus production for gene therapy: the role of cell density, multiplicity of infection and medium exchange}." {APPLIED MICROBIOLOGY AND BIOTECHNOLOGY}. {81} (Submitted): {1041-1049}. Abstract

Teixeira, A. P., J. J. Clemente, A. E. Cunha, M. J. T. Carrondo, and R. Oliveira. "{Bioprocess iterative batch-to-batch optimization based on hybrid parametric/nonparametric models}." {BIOTECHNOLOGY PROGRESS}. {22} (Submitted): {247-258}. Abstract

Goerke, Aaron R., Johannes Scholten, Nedim Emil Altaras, Ana Teixeira, Joao Clemente, Antonio Cunha, Rui Oliveira, and John G. Aunins. "{BIOT 328-Fast development of Pichia pastoris cultures based on hybrid semiparametric process control}." {ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY}. {236} (Submitted). Abstract

Teixeira, Ana P., Joao M. L. Dias, Nuno Carinhas, Marcos Sousa, Joao J. Clemente, Antonio E. Cunha, Moritz von Stosch, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Cell functional enviromics: Unravelling the function of environmental factors}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract

Freitas, Filomena, Vitor D. Alves, Joana Pais, Nuno Costa, Cristina Oliveira, Luis Mafra, Loic Hilliou, Rui Oliveira, and Maria A. M. Reis. "{Characterization of an extracellular polysaccharide produced by a Pseudomonas strain grown on glycerol}." {BIORESOURCE TECHNOLOGY}. {100} (Submitted): {859-865}. Abstract

Teixeira, Ana P., Sonia Sa Santos, Nuno Carinhas, Rui Oliveira, and Paula M. Alves. "{Combining metabolic flux analysis tools and C-13 NMR to estimate intracellular fluxes of cultured astrocytes}." {NEUROCHEMISTRY INTERNATIONAL}. {52} (Submitted): {478-486}. Abstract

Freitas, F., C. A. V. Torres, V. Alves, M. Cruz, R. Oliveira, and M. A. M. Reis. "{Conversion of glycerol into a new high-value fucose-containing bacterial exopolysaccharide}." {JOURNAL OF BIOTECHNOLOGY}. {150} (Submitted): {S88}. Abstract

Alves, Vitor D., Filomena Freitas, Nuno Costa, Monica Carvalheira, Rui Oliveira, Maria P. Goncalves, and Maria A. M. Reis. "{Effect of temperature on the dynamic and steady-shear rheology of a new microbial extracellular polysaccharide produced from glycerol byproduct}." {CARBOHYDRATE POLYMERS}. {79} (Submitted): {981-988}. Abstract

Freitas, Filomena, Vitor D. Alves, Monica Carvalheira, Nuno Costa, Rui Oliveira, and Maria A. M. Reis. "{Emulsifying behaviour and rheological properties of the extracellular polysaccharide produced by Pseudomonas oleovorans grown on glycerol byproduct}." {CARBOHYDRATE POLYMERS}. {78} (Submitted): {549-556}. Abstract

Roldao, Antonio, Rui Oliveira, Manuel J. T. Carrondo, and Paula M. Alves. "{Error assessment in recombinant baculovirus titration: Evaluation of different methods}." {JOURNAL OF VIROLOGICAL METHODS}. {159} (Submitted): {69-80}. Abstract

Ferreira, A. R., J. M. L. Dias, M. von Stosch, J. Clemente, A. E. Cunha, and Rui Oliveira. "{Fast development of Pichia pastoris GS115 Mut(+) cultures employing batch-to-batch control and hybrid semi-parametric modeling}." {BIOPROCESS AND BIOSYSTEMS ENGINEERING}. {37} (Submitted): {629-639}. Abstract

Teixeira, Ana P., Tiago M. Duarte, Rui Oliveira, Manuel J. T. Carrondo, and Paula M. Alves. "{High-throughput analysis of animal cell cultures using two-dimensional fluorometry}." {JOURNAL OF BIOTECHNOLOGY}. {151} (Submitted): {255-260}. Abstract