Publications

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Journal Article
Carrondo, Manuel J. T., Paula M. Alves, Nuno Carinhas, Jarka Glassey, Friedemann Hesse, Otto-Wilhelm Merten, Martina Micheletti, Thomas Noll, Rui Oliveira, Udo Reichl, Arne Staby, Ana P. Teixeira, Henry Weichert, and Carl-Fredrik Mandenius. "{How can measurement, monitoring, modeling and control advance cell culture in industrial biotechnology?}." {BIOTECHNOLOGY JOURNAL}. {7} (Submitted): {1522-1529}. Abstract
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Teixeira, Ana P., Carlos Alves, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control}." {BMC BIOINFORMATICS}. {8} (Submitted). Abstract
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Carinhas, Nuno, Vicente Bernal, Ana P. Teixeira, Manuel J. T. Carrondo, Paula M. Alves, and Rui Oliveira. "{Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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Ricardo, Ana R., Rui Oliveira, Svetlozar Velizarov, Maria A. M. Reis, and Joao G. Crespo. "{Hybrid modeling of counterion mass transfer in a membrane-supported biofilm reactor}." {BIOCHEMICAL ENGINEERING JOURNAL}. {62} (Submitted): {22-33}. Abstract
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Teixeira, Ana P., Nuno Carinhas, Jodo M. L. Dias, Pedro Cruz, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Hybrid semi-parametric mathematical systems: Bridging the gap between systems biology and process engineering}." {JOURNAL OF BIOTECHNOLOGY}. {132} (Submitted): {418-425}. Abstract
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Castanheiro, JE, I. M. Fonseca, A. M. Ramos, R. Oliveira, and J. Vital. "{Hydration of alpha-pinene over molybdophosphoric acid immobilized in hydrophobically modified PVA membranes}." {CATALYSIS TODAY}. {104} (Submitted): {296-304}. Abstract
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Carinhas, Nuno, Vicente Bernal, Francisca Monteiro, Manuel J. T. Carrondo, Rui Oliveira, and Paula M. Alves. "{Improving baculovirus production at high cell density through manipulation of energy metabolism}." {METABOLIC ENGINEERING}. {12} (Submitted): {39-52}. Abstract
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Teixeira, Ana P., Carla A. M. Portugal, Nuno Carinhas, Joao M. L. Dias, Joao P. Crespo, Paula M. Alves, M. J. T. Carrondo, and Rui Oliveira. "{In Situ 2D Fluorometry and Chemometric Monitoring of Mammalian Cell Cultures}." {BIOTECHNOLOGY AND BIOENGINEERING}. {102} (Submitted): {1098-1106}. Abstract
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Roldao, Antonio, Helena L. A. Vieira, Paula M. Alves, R. Oliveira, and Manuel J. T. Carrondo. "{Intracellular dynamics in rotavirus-like particles production: Evaluation of multigene and monocistronic infection strategies}." {PROCESS BIOCHEMISTRY}. {41} (Submitted): {2188-2199}. Abstract
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Teixeira, A. P., J. M. L. Dias, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Macroscopic control of intracellular fluxes: application to mammalian cell cultures}." {NEW BIOTECHNOLOGY}. {25} (Submitted): {S332}. Abstract
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Roldao, Antonio, Helena L. A. Vieira, Annie Charpilienne, Didier Poncet, Polly Roy, Manuel J. T. Carrondo, Paula M. Alves, and R. Oliveira. "{Modeling rotavirus-like particles production in a baculovirus expression vector system: Infection kinetics, baculovirus DNA replication, mRNA synthesis and protein production}." {JOURNAL OF BIOTECHNOLOGY}. {128} (Submitted): {875-894}. Abstract
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Teixeira, A., A. E. Cunha, J. J. Clemente, JL Moreira, HJ Cruz, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Modelling and optimization of a recombinant BHK-21 cultivation process using hybrid grey-box systems}." {JOURNAL OF BIOTECHNOLOGY}. {118} (Submitted): {290-303}. Abstract
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Ricardo, Ana R., Rui Oliveira, Svetlozar Velizarov, Maria A. M. Reis, and Joao G. Crespo. "{Multivariate statistical modelling of mass transfer in a membrane-supported biofilm reactor}." {PROCESS BIOCHEMISTRY}. {46} (Submitted): {1981-1992}. Abstract
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Torres, Cristiana A. V., Filomena Freitas, Vtor D. Alves, Madalena Cruz, Rui Oliveira, and Maria A. M. Reis. "{New Microbial Fucose-Containing Polysaccharide from Glycerol byproduct: Rheological Studies}." {JOURNAL OF BIOTECHNOLOGY}. {150} (Submitted): {S565}. Abstract
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Roldao, Antonio, Maria Candida M. Mellado, J. C. Lima, Manuel J. T. Carrondo, Paula M. Alves, and R. Oliveira. "{On the Effect of Thermodynamic Equilibrium on the Assembly Efficiency of Complex Multi-Layered Virus-Like Particles (VLP): the Case of Rotavirus VLP}." {PLOS COMPUTATIONAL BIOLOGY}. {8} (Submitted). Abstract
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Carinhas, Nuno, Vicente Bernal, Francisca Monteiro, Manuel J. T. Carrondo, Rui Oliveira, and Paula M. Alves. "{Optimizing baculovirus/insect cells-based bioprocesses: Combining experimental and computational tools for metabolic investigation}." {ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY}. {241} (Submitted). Abstract
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Glassey, Jarka, Krist V. Gernaey, Christoph Clemens, Torsten W. Schulz, Rui Oliveira, Gerald Striedner, and Carl-Fredrik Mandenius. "{Process analytical technology (PAT) for biopharmaceuticals}." {BIOTECHNOLOGY JOURNAL}. {6} (Submitted): {369-377}. Abstract
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Freitas, Filomena, Vitor D. Alves, Joana Pais, Monica Carvalheira, Nuno Costa, Rui Oliveira, and Maria A. M. Reis. "{Production of a new exopolysaccharide (EPS) by Pseudomonas oleovorans NRRL B-14682 grown on glycerol}." {PROCESS BIOCHEMISTRY}. {45} (Submitted): {297-305}. Abstract
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Chagas, B., F. Freitas, L. Mafra, J. Cortez, R. Oliveira, and M. A. M. Reis. "{Production of chitin-glucan complex (CGC) from biodiesel industry byproduct}." {JOURNAL OF BIOTECHNOLOGY}. {150} (Submitted): {S381-S382}. Abstract
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Roca, Christophe, Barbara Chagas, Ines Farinha, Filomena Freitas, Luis Mafra, Filipe Aguiar, Rui Oliveira, and Maria A. M. Reis. "{Production of yeast chitin-glucan complex from biodiesel industry byproduct}." {PROCESS BIOCHEMISTRY}. {47} (Submitted): {1670-1675}. Abstract
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Ferreira, Ana R., Joao M. L. Dias, Ana P. Teixeira, Nuno Carinhas, Rui M. C. Portela, Ines A. Isidro, Moritz von Stosch, and Rui Oliveira. "{Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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Carinhas, Nuno, Aaron Mark Robitaille, Suzette Moes, Manuel Jose Teixeira Carrondo, Paul Jenoe, Rui Oliveira, and Paula Marques Alves. "{Quantitative Proteomics of Spodoptera frugiperda Cells during Growth and Baculovirus Infection}." {PLOS ONE}. {6} (Submitted). Abstract
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Galinha, C. F., G. Carvalho, C. A. M. Portugal, G. Guglielmi, R. Oliveira, J. G. Crespo, and M. A. M. Reis. "{Real-time monitoring of membrane bioreactors with 2D-fluorescence data and statistically based models}." {WATER SCIENCE AND TECHNOLOGY}. {63} (Submitted): {1381-1388}. Abstract
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Alves, Vitor D., Filomena Freitas, Cristiana A. V. Torres, Madalena Cruz, Rodolfo Marques, Christian Grandfils, M. P. Goncalves, Rui Oliveira, and Maria A. M. Reis. "{Rheological and morphological characterization of the culture broth during exopolysaccharide production by Enterobacter sp. (vol 80, pg 325, 2010)}." {CARBOHYDRATE POLYMERS}. {80} (Submitted): {325}. Abstract
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Alves, Vitor D., Filomena Freitas, Cristiana A. V. Torres, Madalena Cruz, Rodolfo Marques, Christian Grandfils, M. P. Goncalves, Rui Oliveira, and Maria A. M. Reis. "{Rheological and morphological characterization of the culture broth during exopolysaccharide production by Enterobacter sp.}." {CARBOHYDRATE POLYMERS}. {81} (Submitted): {758-764}. Abstract
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