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2013
Neu, Ursula, Stacy-Ann A. Allen, Barbel S. Blaum, Yan Liu, Martin Frank, Angelina S. Palma, Luisa J. Stroh, Ten Feizi, Thomas Peters, Walter J. Atwood, and Thilo Stehle. "A Structure-Guided Mutation in the Major Capsid Protein Retargets BK Polyomavirus." PLoS pathogens. 9 (2013): e1003688. Abstract
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Neu, Ursula, Zaigham Mahmood Khan, Benjamin Schuch, Angelina S. Palma, Yan Liu, Michael Pawlita, Ten Feizi, and Thilo Stehle. "Structures of B-Lymphotropic Polyomavirus VP1 in Complex with Oligosaccharide Ligands." PLoS pathogens. 9 (2013): e1003714. Abstract
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Alves, R.D.a, Rodrigues Andrade Pawlicka Pereira Martins Fortunato Silva L. C. a J. "Study and characterization of a novel polymer electrolyte based on agar doped with magnesium triflate." Molecular Crystals and Liquid Crystals. 570 (2013): 1-11. AbstractWebsite

In the present work one host natural matrix - agar - has been doped with magnesium triflate (Mg(CF3SO3)2) with the goal of developing electrolytes for the fabrication of solid-state devices. The resulting samples have been represented by the notation Agar nMg(CF3SO3)2, where n represents the percentage of the magnesium triflate salt proportion in the electrolyte samples. The samples investigated, with n between 0.00% and 37.56%, have been obtained as transparent and thin films. The samples have been characterized by conductivity measurements, thermal analysis, cyclic voltammetry, X-ray diffraction (XRD), and scanning electron microscopy (SEM). The agar-based electrolytes were also tested as ionic conductor in an electrochromic device with the following configuration: glass/indium tin oxide (ITO)/WO 3/agar-based electrolyte/CeO2-TiO2/ITO/glass. © 2013 Copyright Taylor and Francis Group, LLC.

Valtchev, Stanimir. "Study of a single-phase series active power filter with hysteresis control." Journal of Energy and Power Engineering (2013). Abstract
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Almeida, Catarina, Miguel Goulão, and João Araújo. "A Systematic Comparison of i* Modelling Tools Based on Syntactic and Well-formedness Rules." iStar. 2013. 43-48. Abstract
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2012
Maiti, B. K., T. Aviles, M. Matzapetakis, I. Moura, S. R. Pauleta, and JJG Moura. "Synthesis of MoS4 (2-)-M (M=Cu and Cd) Clusters: Potential NMR Spectroscopic Structural Probes for the Orange Protein." European Journal of Inorganic Chemistry (2012): 4159-4166. AbstractWebsite

Two synthetic strategies of tetrathiomolybdate-metal clusters with the potential to be used as NMR structural probes for the location of the metal cofactor in the orange protein (ORP) are described. The first strategy is based on the substitution reaction in which small organic ligands bind directly to the metal centre in a molybdenumcopper hetero-dinuclear cluster. Interaction between [PPh4]2[MoS4CuCl] and either aliphatic [beta-mercaptoethanol (b-me)] or aromatic [o-aminobenzenethiol (abt)] thiols in the presence of a strong base resulted in the formation of [Ph4P]2[S2MoS2Cu(b-me)] (1a) and [Et4N]2[S2MoS2Cu(abt)]center dot H2O center dot 0.25DMF (1b), which can be used to obtain intermolecular NOEs. The compound 1a readily hydrolyzed to [Ph4P]2[OSMoS2Cu(b-me)] (1ahydro) in contact with a protic solvent. The second strategy consisted of the incorporation of cadmium into tetrathiomolybdate ([MoS4]2), which gives rise to the trinuclear cluster compound [PPh4]2[(MoS4)2Cd] (2). All clusters were characterized spectroscopically and their structure determined by X-ray diffraction. The NMR spectroscopic data are consistent with the formation of a complex with a 1:1 ratio of {MoS4Cu} and thiol. The 113Cd NMR chemical shift of compound 2 is consistent with the cadmium having a tetrahedral geometry and coordinated by four sulfur ligands. The tetraphenylphosphonium cation in compound 1a was replaced by a tetramethylammonium countercation originating in the water-soluble compound [Me4N-1a]. Solubility in aqueous buffers is a requirement for incorporating this cluster into apo-ORP. These compounds will be used to identify the exact location of the ORP heterometallic cluster using NMR methodologies.

Monteiro, Regina C. C., Andreia A. S. Lopes, Maria M. A. Lima, Joao P. Veiga, Rui JC Silva, Carlos J. Dias, Erika J. R. Davim, and Maria H. V. Fernandes. "Sintering, Crystallization, and Dielectric Behavior of Barium Zinc Borosilicate GlassesuEffect of Barium Oxide Substitution for Zinc Oxide." Journal of the American Ceramic Society. 95.10 (2012): 3144-3150. Abstract
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Inácio, Micael M. G., A. Pinho Ramos, Duarte M. V. Faria, and Válter J. G. Lúcio. "Strengthening of flat slabs with transverse reinforcement by introduction of steel bolts using different anchorage approaches." Engineering Structures. 44 (2012): 383-397. AbstractWebsite

This work presents an experimental study concerning the post-punching behaviour of flat slabs strengthened with a new technique based on post-tensioning with anchorages by bonding using an epoxy adhesive. This strengthening technique proved efficient with respect to ultimate and serviceability states. Five slab specimens were tested in the post-punching range and it was found that the post-punching resistance was on average 78{%} of the punching resistance. This paper reports the development of strand forces and slab displacements from the beginning of the tests, including the bond stresses developed at several stages of the loading process. It was observed that top reinforcement bars were capable of transmitting post-punching loads to the prestressing strands. Taking this into account and based on the load bath envisaged from the column to the slab, expressions for the vertical load capacities corresponding to the parts of the load path are presented and compared with the experimental results, showing their ability to predict both ultimate loads and modes of failure. Compared with other strengthening techniques, the one proposed here not only upgrades ultimate and serviceability behaviour but also adds post-punching resistance, which is a great advantage in the event of progressive collapse, since it may avoid the collapse of an entire structure, thus reducing the risk of material and human losses.

Pereira, AS, C. G. Timoteo, M. Guilherme, F. Folgosa, S. G. Naik, A. G. Duarte, BH HUYNH, and P. Tavares. "Spectroscopic evidence for and characterization of a trinuclear ferroxidase center in bacterial ferritin from Desulfovibrio vulgaris Hildenborough." Journal of the American Chemical Society. 134 (2012): 10822-32. AbstractWebsite

Ferritins are ubiquitous and can be found in practically all organisms that utilize Fe. They are composed of 24 subunits forming a hollow sphere with an inner cavity of ~80 A in diameter. The main function of ferritin is to oxidize the cytotoxic Fe(2+) ions and store the oxidized Fe in the inner cavity. It has been established that the initial step of rapid oxidation of Fe(2+) (ferroxidation) by H-type ferritins, found in vertebrates, occurs at a diiron binding center, termed the ferroxidase center. In bacterial ferritins, however, X-ray crystallographic evidence and amino acid sequence analysis revealed a trinuclear Fe binding center comprising a binuclear Fe binding center (sites A and B), homologous to the ferroxidase center of H-type ferritin, and an adjacent mononuclear Fe binding site (site C). In an effort to obtain further evidence supporting the presence of a trinuclear Fe binding center in bacterial ferritins and to gain information on the states of the iron bound to the trinuclear center, bacterial ferritin from Desulfovibrio vulgaris (DvFtn) and its E130A variant was loaded with substoichiometric amounts of Fe(2+), and the products were characterized by Mossbauer and EPR spectroscopy. Four distinct Fe species were identified: a paramagnetic diferrous species, a diamagnetic diferrous species, a mixed valence Fe(2+)Fe(3+) species, and a mononuclear Fe(2+) species. The latter three species were detected in the wild-type DvFtn, while the paramagnetic diferrous species was detected in the E130A variant. These observations can be rationally explained by the presence of a trinuclear Fe binding center, and the four Fe species can be properly assigned to the three Fe binding sites. Further, our spectroscopic data suggest that (1) the fully occupied trinuclear center supports an all ferrous state, (2) sites B and C are bridged by a mu-OH group forming a diiron subcenter within the trinuclear center, and (3) this subcenter can afford both a mixed valence Fe(2+)Fe(3+) state and a diferrous state. Mechanistic insights provided by these new findings are discussed and a minimal mechanistic scheme involving O-O bond cleavage is proposed.

R, Jardim-Goncalves, Popplewell K, and Grilo A. "Sustainable interoperability: The future of Internet based industrial enterprises." COMPUTERS IN INDUSTRY. 63 (2012): 731-738. Abstract
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Goulão, Miguel, Nelson Fonte, Michel Wermelinger, and Fernando Brito Abreu. "Software Evolution Prediction Using Seasonal Time Analysis: a Comparative Study." 16th European Conference on Software Maintenance and Reengineering (CSMR 2012). Szeged, Hungary: IEEE Computer Society, 2012. Abstractgoulao2012csmr.pdf

Prediction models of software change requests are useful for supporting rational and timely resource
allocation to the evolution process. In this paper we use a time series forecasting model to predict software
maintenance and evolution requests in an open source software project (Eclipse), as an example of projects with seasonal release cycles. We build an ARIMA model based on data collected from Eclipse’s change request tracking system since the project’s start. A change request may refer to defects found in the software, but also to suggested improvements in the system under scrutiny. Our model includes the identification of seasonal patterns and tendencies, and is validated through the forecast of the change requests evolution for the next 12 months. The usage of seasonal information significantly improves the estimation ability of this model, when compared to other ARIMA models found in the literature, and does so for a much longer estimation period. Being able to accurately forecast the change requests’ evolution over a fairly long time period is an important ability for enabling adequate process control in maintenance activities, and facilitates
effort estimation and timely resources allocation. The approach presented in this paper is suitable for projects with a relatively long history, as the model building process relies on historic data.

Poggi, F., and M. P. Amado. "Sustentabilidade em Edifícios de Habitação: Um novo Sistema de Certificação." 2ª Conferência de Reabilitação Sustentável de Edifícios no Espaço Lusófono. Caparica: FCT UNL - MAMAOT CV, 2012.
Duarte, AP, JF Coelho, JC Bordado, M. T. Cidade, and MH Gil. "Surgical adhesives: systematic review of the main types and development forecast." 37.8 (2012): 1031-1050. Abstract
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Li, L., P. S. Lopes, V. Rosa, C. A. Figueira, M. A. N. D. A. Lemos, M. T. Duarte, T. Avilés, and P. T. Gomes. "Synthesis and structural characterisation of (aryl-BIAN)copper(i) complexes and their application as catalysts for the cycloaddition of azides and alkynes." Dalton Transactions. 41.17 (2012): 5144-5154. AbstractWebsite
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Esteves, V. M. C., J. M. C. Sousa, C. A. Silva, A. P. B. Povoa, and M. I. Gomes. "SCant-design: Closed loop supply chain design using ant colony optimization." 2012 IEEE Congress on Evolutionary Computation (CEC). Brisbane, Australia 2012. Abstractpreprint_esteves_et_al._-_2012_-_scant-design_closed_loop_supply_chain_design_using_ant_colony_optimization.pdf

This paper proposes a new optimization methodology for supply chain design, using ant colony optimization. The objective of this methodology is to choose the facilities that will take part in a multi-product closed-loop supply chain, such as factories, warehouses and disassembly centers, in order to minimize the costs related to these facilities and those related to transportation costs, both in the forward and reverse chains. Considering that total production quantities for factories, expected cross-docking stocks for warehouses, and disassembly centers are determined by this methodology, it can be considered that it undertakes both strategic and tactical Supply Chain Management (SCM) problems at once. The developed algorithm, SCant-Design, is sufficiently general to solve any SCM configuration, with linear and nonlinear cost functions and constraints. The algorithm results were compared to a MILP approach for a particular case study and the obtained value for the cost function is very similar, although using less facilities.

Gonçalves, Ricardo, and José Júlio Alferes. "Specifying and reasoning about normative systems in deontic logic programming." International Conference on Autonomous Agents and Multiagent Systems, AAMAS 2012. International Foundation for Autonomous Agents and Multiagent Systems, 2012. 1423-1424. Abstractaamas12deontic.pdf

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Valtchev, {Stanimir Stoyanov}, and DEE Group Author. "Survey on EV electrical drive train with induction motor." International Symposium on Electric Vehicles. 2012. 1-5. Abstract

In the last time many research works were devoted to the electrical drive train with induction motors due to its robust construction and low cost in comparison with its competitor, PM synchronous motor. The construction of the induction motor is simple but its efficient control needs more sophisticated algorithms and appropriate inverters in order to obtain the highest technical and economical performance. In this paper we present a review of the last research results on the induction motor topologies dedicated to EV, on the architecture of inverters and of the efficient control strategies. There will be presented many promising solutions which are analysed and compared in order to offer to the EV electrical drive train designers the necessary information for a selection to be done.

Delgado, Nuno, and Hervé Paulino. "Sobre um Mecanismo de Controlo de Concorrência baseado em Grupos de Recursos." INForum 2012 - Atas do 4º Simpósio de Informática. Eds. Antónia Lopes, and José Orlando Pereira. Universidade Nova de Lisboa, 2012. 302-305. Abstract
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Marques, Eduardo, and Hervé Paulino. "Single Operation Multiple Data - Data Parallelism at Subroutine Level." 14th IEEE International Conference on High Performance Computing & Communication, HPCC 2012, Liverpool, UK, June 25-27, 2012. Ed. Lei(Chris) Liu Laurence Tianruo Yang Seetharami Seelam Laurent Lefevre Geyong Min, Jia Hu. IEEE Computer Society, 2012. 254-261. Abstract
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