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2008
Bobev, SG, J. Lopes, and AJL Phillips. "First report of Diplodia seriata causing shoot blight and cankers of Cotoneaster salicifolius in Bulgaria." Plant Disease. 92 (2008): 976. Abstract
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Vidinha, P., N. M. T. Louren?o, C. Pinheiro, A. R. Brás, T. Carvalho, T. Santos-Silva, A. Mukhopadhyay, MJ Romão, J. Parola, M. Dionisio, J. M. S. Cabral, CAM Afonso, and S. Barreiros. "Ion jelly: A tailor-made conducting material for smart electrochemical devices." Chemical Communications (2008): 5842-5844. Abstract
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Reguengo, R., V. Lúcio, and C. Chastre Ligação Pilar - Fundação em Estruturas Pré-Fabricadas. Estudo experimental. Seminário SILE’08. Lisboa: Fundação FCTUNL, 2008. Abstract
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Palma, Angelina S., Yan Liu, Maria A. Campanero-Rhodes, Robert A. Childs, Mark S. Stoll, Thomas Schallus, Claudia Muhle-Goll, Mukram Mackeen, Wengang Chai, and Ten Feizi. "Malectin-a Novel Lectin of the Endoplasmic Reticulum and a Candidate New Player in the Early Steps Of Protein N-Glycosylation." Glycobiology. 18 (2008): 948-949. Abstract
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Schallus, Thomas, Christine Jaeckh, Krisztina Feher, Angelina S. Palma, Yan Liu, Jeremy C. Simpson, Mukram Mackeen, Gunter Stier, Toby J. Gibson, Ten Feizi, Tomas Pieler, and Claudia Muhle-Goll. "Malectin: A novel carbohydrate-binding protein of the endoplasmic reticulum and a candidate player in the early steps of protein N-glycosylation." Molecular Biology of the Cell. 19 (2008): 3404-3414. Abstract
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Monteiro, R. C. C., M. M. R. A. Lima, and S. Alves. "Mechanical characteristics of clay structural ceramics containing coal fly ash." International Journal of Mechanics and Materials in Design. 4 (2008): 213-220. AbstractWebsite

In this work, the mechanical characterization of ceramic products processed from red clay with different amounts of added coal fly ash was investigated. Coal fly ash produced by power plants is a waste material that constitutes an alternative source of minerals for the production of traditional building ceramics, as it is a complex mixture of several oxides such as SiO2, Al2O3, CaO, Fe2O3, Na2O, TiO2, which are usually present in the composition of such ceramics. A powder technology and firing route was followed for the processing of the clay and coal fly ash based ceramics. Different proportions of waste (10, 25 and 50%, by weight) were added to red clay, and then the mixed powders were pressed to form compacts that were fired at a selected temperature in the range 850-1,150°C. The effects of waste content and of heating conditions on the microstructure and mechanical characteristics of the obtained materials were investigated. The density, porosity, water absorption, flexural strength, hardness and fracture toughness of the produced materials were evaluated. A comparison was made between the properties of the produced ceramics with those of traditional ceramic materials used in construction, e.g. floor or wall tiles, and it was observed that the clay based products with coal fly ash additions may be used in similar applications. © 2007 Springer Science+Business Media B.V.

Monteiro, R. C. C., M. M. R. A. Lima, and S. Alves. "Mechanical characteristics of clay structural ceramics containing coal fly ash." International Journal of Mechanics and Materials in Design. 4 (2008): 213-220. Abstract
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Lazzizera, C., S. Frisullo, A. Alves, and AJL Phillips. "Morphology, phylogeny and pathogenicity of Botryosphaeria and Neofusicoccum species associated with drupe rot of olives in southern Italy." Plant Pathology. 57 (2008): 948-956. Abstract
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Neagu, R. M., E. R. Neagu, M. C. Lanca, and J. N. Marat-Mendes. "New Experimental Facts Concerning the Thermally Stimulated Discharge Current in Dielectric Materials." Advanced Materials Forum Iv. Eds. AT Marques, AF Silva, APM Baptista, C. Sa, FJLA Alves, LF Malheiros, and M. Vieira. Vol. 587-588. Materials Science Forum, 587-588. 2008. 328-332. Abstract

The thermally stimulated discharge current (TSDC.) method is a very sensitive and a very selective technique to analyze dipole disorientation and the movement of de-trapped space charge (SC). We have proposed a variant of the TSDC method, namely the final thermally stimulated discharge current (FTSDC) technique. flee experimental conditions can be selected so that the FTSDC is mainly determined by the SC de-trapping. The temperatures of the maximum intensity of the fractional polarization peaks obtained at low temperature, in the range of the local (secondary) relaxation, are in general about 10 to 20 K above the poling temperature. Measurements of the FTSDC in a wide temperature range demonstrate the existence of an apparent peak at a temperature T-ma shifted with about 10 to 30 K above the charging temperature T-c. The shift of T-ma with respect to T-c depends on the experimental conditions. The peak width at the half maximum intensity decreases as T-c increases and the thermal apparent activation energy increases. The variations are not monotonous revealing the temperature range where the molecular motion is stronger and consequently the charge trapping and de-trapping processes are affected. Our results demonstrate that there is a strong similarity between the elementary peaks obtained by the two methods, and the current is mainly determined by SC de-trapping. Even the best elementary peaks are not fitted very well by the analytical equation, indicating that the hypothesis behind this equation have to be reconsidered.

Neagu, R. M., E. R. Neagu, Carmo M. Lanca, and J. N. Marat-Mendes. "New Experimental Facts Concerning the Thermally Stimulated Discharge Current in Dielectric Materials." Advanced Materials Forum Iv. Eds. AT Marques, AF Silva, APM Baptista, C. Sa, FJLA Alves, LF Malheiros, and M. Vieira. Vol. 587-588. Materials Science Forum, 587-588. 2008. 328-332. Abstract

The thermally stimulated discharge current (TSDC.) method is a very sensitive and a very selective technique to analyze dipole disorientation and the movement of de-trapped space charge (SC). We have proposed a variant of the TSDC method, namely the final thermally stimulated discharge current (FTSDC) technique. flee experimental conditions can be selected so that the FTSDC is mainly determined by the SC de-trapping. The temperatures of the maximum intensity of the fractional polarization peaks obtained at low temperature, in the range of the local (secondary) relaxation, are in general about 10 to 20 K above the poling temperature. Measurements of the FTSDC in a wide temperature range demonstrate the existence of an apparent peak at a temperature T-ma shifted with about 10 to 30 K above the charging temperature T-c. The shift of T-ma with respect to T-c depends on the experimental conditions. The peak width at the half maximum intensity decreases as T-c increases and the thermal apparent activation energy increases. The variations are not monotonous revealing the temperature range where the molecular motion is stronger and consequently the charge trapping and de-trapping processes are affected. Our results demonstrate that there is a strong similarity between the elementary peaks obtained by the two methods, and the current is mainly determined by SC de-trapping. Even the best elementary peaks are not fitted very well by the analytical equation, indicating that the hypothesis behind this equation have to be reconsidered.

Neagu, R. M., E. R. Neagu, Carmo M. Lanca, J. N. Marat-Mendes, AT Marques, AF Silva, APM Baptista, C. Sa, FJLA Alves, LF Malheiros, and M. Vieira. "New Experimental Facts Concerning the Thermally Stimulated Discharge Current in Dielectric Materials." Advanced Materials Forum Iv. Vol. 587-588. 2008. 328-332. Abstract
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Gavel, OY, SA Bursakov, G. Di Rocco, J. Trincao, I. J. Pickering, GN George, JJ Calvete, VL Shnyrov, CD Brondino, AS Pereira, J. Lampreia, P. Tavares, JJG Moura, and I. Moura. "A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774." Journal of Inorganic Biochemistry. 102 (2008): 1380-1395. AbstractWebsite

Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the "LID" domain. The sequence (129)Cys-X(5)-His-X(15)-Cys-X(2)-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.

Lazzizera, C., S. Frisullo, A. Alves, J. Lopes, and AJL Phillips. "Phylogeny and morphology of Diplodia species on olives in southern Italy and description of Diplodia olivarum sp nov." Fungal Diversity. 31 (2008): 63-71. Abstract
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Dikaiakos, Marios, Omer Rana, Shmuel Ur, and João Louren{\c c}o. "Topic 1: Support Tools and Environments." Euro-Par 2008 – Parallel Processing. Vol. 5168. Lecture Notes in Computer Science, 5168. Berlin, Heidelberg: Springer-Verlag, 2008. 1-2. Abstract
The spread of systems that provide parallelism either ‘‘in-the-large’’ (grid infrastructures, clusters) or ‘‘in-the-small’’ (multi-core chips), creates new opportunities for exploiting parallelism in a wider spectrum of application domains. However, the increasing complexity of parallel and distributed platforms renders the programming, the use, and the management of these systems a costly endeavor that requires advanced expertise and skills. Therefore, there is an increasing need for powerful support tools and environments that will help end-users, application programmers, software engineers and system administrators to manage the increasing complexity of parallel and distributed platforms.
Dikaiakos, Marios, Omer Rana, Shmuel Ur, and João M. Lourenço. "Topic 1: Support Tools and Environments." Euro-Par 2008 Parallel Processing. Vol. 5168. Lecture Notes in Computer Science, 5168. Berlin, Heidelberg: Springer-Verlag, 2008. 1-2. Abstract

The spread of systems that provide parallelism either «in-the-large» (grid infrastructures, clusters) or «in-the-small» (multi-core chips), creates new opportunities for exploiting parallelism in a wider spectrum of application domains. However, the increasing complexity of parallel and distributed platforms renders the programming, the use, and the management of these systems a costly endeavor that requires advanced expertise and skills. Therefore, there is an increasing need for powerful support tools and environments that will help end-users, application programmers, software engineers and system administrators to manage the increasing complexity of parallel and distributed platforms.

Lima, M. M. R. A., and R. C. C. Monteiro. "Viscous sintering in a glass-alumina system." Materials Science Forum. 587-588 (2008): 143-147. AbstractWebsite

The densification during sintering of borosilicate glass matrix composites with 25 vol. % alumina (Al2O3) particles was investigated. The powder compacts, isostatically pressed at 200 MPa, were sintered at a temperature within the range 800-1000° C and maintained at this temperature during various times. The sintering behaviour of the composites was investigated by density measurement and by axial and radial shrinkage measurements. The crystalline phases present in the sintered composites were identified by XRD and the microstructure was analyzed by SEM. For temperatures up to 900°C, the relative density of the composites increased continuously with sintering temperature and sintering time, while for higher temperatures, the density increased rapidly and then slowed down to achieve a nearly constant value after sintering the composites for 30 minutes. The composites exhibited isotropic shrinkage behaviour when sintered at 800°C and 850°C, but at higher temperatures slightly higher axial shrinkage than radial shrinkage was observed. The shrinkage behaviour and microstructural characteristics of the composites indicate that densification during sintering can be attributed to the viscous flow of the borosilicate glass.

Margarida, M., RA Lima, and Regina Conceição Corredeira da Monteiro. "Viscous Sintering in a Glass-Alumina System." Materials Science Forum. Vol. 587. Trans Tech Publications, 2008. 143-147. Abstract
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Gavel, Olga Yu, Sergey A. Bursakov, Giulia Di Rocco, Jose Trincao, Ingrid J. Pickering, Graham N. George, Juan J. Calvete, Valery L. Shnyrov, Carlos D. Brondino, Alice S. Pereira, Jorge Lampreia, Pedro Tavares, Jose J. G. Moura, and Isabel Moura. "{A new type of metal-binding site in cobalt- and zinc-containing adenylate kinases isolated from sulfate-reducers Desulfovibrio gigas and Desulfovibrio desulfuricans ATCC 27774}." Journal Of Inorganic Biochemistry. 102 (2008): 1380-1395. Abstract
Adenylate kinase (AK) mediates the reversible transfer of phosphate groups between the adenylate nucleotides and contributes to the maintenance of their constant cellular level, necessary for energy metabolism and nucleic acid synthesis. The AK were purified from crude extracts of two sulfate-reducing bacteria (SRB), Desulfovibrio (D.) gigas NCIB 9332 and Desulfovibrio desulfuricans ATCC 27774, and biochemically and spectroscopically characterised in the native and fully cobalt- or zinc-substituted forms. These are the first reported adenylate kinases that bind either zinc or cobalt and are related to the subgroup of metal-containing AK found, in most cases, in Gram-positive bacteria. The electronic absorption spectrum is consistent with tetrahedral coordinated cobalt, predominantly via sulfur ligands, and is supported by EPR. The involvement of three cysteines in cobalt or zinc coordination was confirmed by chemical methods. Extended X-ray absorption fine structure (EXAFS) indicate that cobalt or zinc are bound by three cysteine residues and one histidine in the metal-binding site of the "LID" domain. The sequence (129)Cys-X-5-His-X-15-Cys-X-2-Cys of the AK from D. gigas is involved in metal coordination and represents a new type of binding motif that differs from other known zinc-binding sites of AK. Cobalt and zinc play a structural role in stabilizing the LID domain. (C) 2008 Elsevier Inc. All rights reserved.
Luque, A., A. Marti, MJ Mendes, and I. Tobias. "{Light absorption in the near field around surface plasmon polaritons}." Journal of Applied Physics. 104 (2008): 8. Abstract

A semiclassical method is developed to calculate the energy absorption of an electronic system located in the near field of a metal nanoparticle sustaining surface plasmons. The results are found to be similar to those of photon absorption from ordinary transversal radiation. However, they are affected by a geometrical factor that can increase the absorption by several orders of magnitude. As example, we investigate ellipsoidal-shaped metal nanoparticles which, under favorable conditions, may provide near field aborption enhancements almost as large as 10(4), and in many cases above 10. (C) 2008 American Institute of Physics. [DOI: 10.1063/1.3014035]

Pereira, L., Barquinha, P., Fortunato, and E. "{Low temperature high k dielectric on poly-Si TFTs}." 354 (2008): 2534-2537. AbstractWebsite
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2007
Santos-Silva, Teresa, Joao Miguel Dias, Alain Dolla, Marie-Claire Durand, Luisa L. Goncalves, Jorge Lampreia, Isabel Moura, and Maria Joao Romao. "Crystal structure of the 16 heme cytochrome from Desulfovibrio gigas: A glycosylated protein in a sulphate-reducing bacterium." JOURNAL OF MOLECULAR BIOLOGY. 370 (2007): 659-673. Abstract
Sulphate-reducing bacteria have a wide variety of periplasmic cytochromes involved in electron transfer from the periplasm to the cytoplasm. HmcA is a high molecular mass cytochrome of 550 amino acid residues that harbours 16 c-type heme groups. We report the crystal structure of HmcA isolated from the periplasm of Desulfovibrio gigas. Crystals were grown. using polyethylene glycol 8K and zinc acetate, and diffracted beyond 2.1 angstrom resolution. A multiple-wavelength anomalous dispersion experiment at the iron absorption edge enabled us to obtain good-quality phases for structure solution and model building. DgHmcA has a V-shape architecture, already observed in HmcA isolated from Desulfovibrio vulgaris Hildenborough. The presence of an oligosaccharide molecule covalently bound to an Asn residue was observed in the electron density maps of DgHmcA and confirmed by mass spectrometry. Three modified monosaccharides appear at the highly hydrophobic vertex, possibly acting as an anchor of the protein to the cytoplasmic membrane. (c) 2007 Elsevier Ltd. All rights reserved.
MC, Lanca, Fu M, Neagu E, Dissado LA, Marat-MendeS J, Tzimas A, and Zadeh S. "Space charge analysis of electrothermally aged XLPE cable insulation." Journal of Non-Crystalline Solids. 353 (2007): 4462-4466. AbstractWebsite
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Rauter, Amelia P., Isabel Branco, Rui G. Lopes, Jorge Justino, Filipa V. M. Silva, Joao P. Noronha, Eurico J. Cabrita, Ignacio Brouard, and Jaime Bermejo. "A new lupene triterpenetriol and anticholinesterase activity of Salvia sclareoides." Fitoterapia. 78 (2007): 474-481. Abstract
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