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2024
Panigrahi, S., S. Jana, T. Calmeiro, E. Fortunato, MJ Mendes, and R. Martins. "MXene-Enhanced Nanoscale Photoconduction in Perovskite Solar Cells Revealed by Conductive Atomic Force Microscopy." ACS Applied Materials and Interfaces. 16 (2024): 1930-1940. AbstractWebsite
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Ramos, António, Carla Marchão, João Nuno Pacheco, Alejandro Enfedaque, Dario Coronelli, Duarte Faria, Jorge de Brito, Miguel Fernández Ruiz, and Rui Marreiros. "A review of punching behavior of slab–column connections with recycled coarse aggregate concrete." Structural Concrete (2024). AbstractWebsite
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Akalin, S. A., T. Mateus, G. Ribeiro, J. Deuermeier, T. Calmeiro, H. Águas, R. Martins, A. T. Vicente, MJ Mendes, and U. D. Yilmazer Menda. "Ultra-flexible, high-performing NAN transparent electrodes for bendable optoelectronic applications." Journal of Materials Science: Materials in Electronics. 35 (2024). AbstractWebsite
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2023
Coelho, Beatriz J., Joana V. Pinto, Jorge Martins, Ana Rovisco, Pedro Barquinha, Elvira Fortunato, Pedro V. Baptista, Rodrigo Martins, and Rui Igreja. "{Parylene C as a Multipurpose Material for Electronics and Microfluidics}." Polymers. 15 (2023): 2277. AbstractWebsite

Poly(p-xylylene) derivatives, widely known as Parylenes, have been considerably adopted by the scientific community for several applications, ranging from simple passive coatings to active device components. Here, we explore the thermal, structural, and electrical properties of Parylene C, and further present a variety of electronic devices featuring this polymer: transistors, capacitors, and digital microfluidic (DMF) devices. We evaluate transistors produced with Parylene C as a dielectric, substrate, and encapsulation layer, either semitransparent or fully transparent. Such transistors exhibit steep transfer curves and subthreshold slopes of 0.26 V/dec, negligible gate leak currents, and fair mobilities. Furthermore, we characterize MIM (metal–insulator–metal) structures with Parylene C as a dielectric and demonstrate the functionality of the polymer deposited in single and double layers under temperature and AC signal stimuli, mimicking the DMF stimuli. Applying temperature generally leads to a decrease in the capacitance of the dielectric layer, whereas applying an AC signal leads to an increase in said capacitance for double-layered Parylene C only. By applying the two stimuli, the capacitance seems to suffer from a balanced influence of both the separated stimuli. Lastly, we demonstrate that DMF devices with double-layered Parylene C allow for faster droplet motion and enable long nucleic acid amplification reactions.

Cerdeira, Jorge Orestes, Maria João Martins, and Marcos Raydan. "The max-out min-in problem: A tool for data analysis." Computers {&}amp$\mathsemicolon$ Operations Research. 154 (2023): 106218. AbstractWebsite
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Caeiro, Frederico, and Ayana Mateus. "A New Class of Generalized Probability-Weighted Moment Estimators for the Pareto Distribution." Mathematics. 11 (2023): 1076. AbstractWebsite
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Pessanha, Sofia, Alexandre Veiga, Delfim Doutel, Fernanda Silva, João Silva, Patrícia M. Carvalho, Sofia Barbosa, José Paulo Santos, Ana Félix, and Jorge Machado. "Evaluation of the influence of the formalin fixation time on the elemental content of tissues measured with X-ray fluorescence." Spectrochimica Acta Part B: Atomic Spectroscopy. 205 (2023): 106704. AbstractWebsite
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Boavida, Nuno, Marta Candeias, Débora Freire, and António B. Moniz. "Opções de política tecnológica: a importância da avaliação, transparência e debate democrático." Público (2023). Abstractopcoes_de_politica_tecnologica_opiniao_publico.pdf

Em Portugal, existe uma ausência de formalização da ciência para assuntos políticos em que a procura de aconselhamento é, em grande medida, informal.

Silva, José Malanho, Linda Cerofolini, Ana Luísa Carvalho, Enrico Ravera, Marco Fragai, Giacomo Parigi, Anjos L. Macedo, Carlos F. G. C. Geraldes, and Claudio Luchinat. "Elucidating the concentration-dependent effects of thiocyanate binding to carbonic anhydrase." 244 (2023): 112222. AbstractWebsite

Many proteins naturally carry metal centers, with a large share of them being in the active sites of several enzymes. Paramagnetic effects are a powerful source of structural information and, therefore, if the native metal is paramagnetic, or it can be functionally substituted with a paramagnetic one, paramagnetic effects can be used to study the metal sites, as well as the overall structure of the protein. One notable example is cobalt(II) substitution for zinc(II) in carbonic anhydrase. In this manuscript we investigate the effects of sodium thiocyanate on the chemical environment of the metal ion of the human carbonic anhydrase II. The electron paramagnetic resonance (EPR) titration of the cobalt(II) protein with thiocyanate shows that the EPR spectrum changes from A-type to C-type on passing from 1:1 to 1:1000-fold ligand excess. This indicates the occurrence of a change in the electronic structure, which may reflect a sizable change in the metal coordination environment in turn caused by a modification of the frozen solvent glass. However, paramagnetic nuclear magnetic resonance (NMR) data indicate that the metal coordination cage remains unperturbed even in 1:1000-fold ligand excess. This result proves that the C-type EPR spectrum observed at large ligand concentration should be ascribed to the low temperature at which EPR measurements are performed, which impacts on the structure of the protein when it is destabilized by a high concentration of a chaotropic agent.

Gavinho, Sílvia R., Ana Sofia Pádua, Isabel Sá-Nogueira, Jorge C. Silva, João P. Borges, Luis C. Costa, and Manuel Pedro F. Graça. "Fabrication, structural and biological characterization of zinc-containing bioactive glasses and their use in membranes for guided bone regeneration." 16.3 (2023): 956. Abstract
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Carrêlo, Henrique, Maria Teresa Cidade, João Paulo Borges, and Paula Soares. "Gellan gum/alginate microparticles as drug delivery vehicles: DOE production optimization and drug delivery." 16.7 (2023): 1029. Abstract
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Carrelo, Henrique, André R. Escoval, Tânia Vieira, Mercedes Jiménez-Rosado, Jorge Carvalho Silva, Alberto Romero, Paula Isabel P. Soares, and João Paulo Borges. "Injectable Thermoresponsive Microparticle/Hydrogel System with Superparamagnetic Nanoparticles for Drug Release and Magnetic Hyperthermia Applications." 9.12 (2023): 982. Abstract
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Páscoa, Frederico T., Carla M. Machado, João O. Cardoso, João Paulo Borges, and Alexandre Velhinho. "Methodology for modelling and simulation of tailored 3D functionally graded auxetic metamaterials." 125.9 (2023): 4647-4661. Abstract
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López-Rojas, Víctor, Lars B. Clemmensen, Jesper Milàn, Oliver Wings, Nicole Klein, and Octávio Mateus. "A new phytosaur species (Archosauriformes) from the Upper Triassic of Jameson Land, central East Greenland." Journal of Vertebrate PaleontologyJournal of Vertebrate Paleontology (2023): e2181086. Abstracta_new_phytosaur_species_archosauriformes_from_the_upper_triassic_of_jameson_land_central_east_greenland.pdfWebsite

ABSTRACTHerein we describe phytosaurs from thin fluvial overbank sandstones of the Upper Triassic Malmros Klint Formation of the Fleming Fjord Group (central East Greenland). The new sample includes more than 150 disarticulated bones and teeth from small to large specimens belonging to at least four individuals. The fossils mostly consist of teeth and postcranial elements and permit the recognition of a new species of Mystriosuchus, M. alleroq, diagnosed by an L-shaped quadratojugal whose anterior suture trends anterodorsally and a tripartite degree of heterodonty. Humeral diaphyseal histology of one specimen reveals a fairly compact cortex that surrounds a cancellous medullary region followed by a remodeling zone containing scattered secondary osteons. Primary bone tissue is parallel-fibred with a moderate to low vascular density. The cortex is cyclically interrupted by distinct growth marks indicating a seasonal environment. A change in growth rate from moderate to low is documented within the outer cortex, indicating that at least this individual was close to somatic maturity. Mystriosuchus has formerly been known as an exclusively European taxon. The new findings support the European faunal influence in East Greenland during the Late Triassic inferred from other taxa such as temnospondyls and archosaurs. The mid-late Norian age of European Mystriosuchus suggests an additional age constraint for the vertebrate-bearing portion of the Malmros Klint Formation.

Chaparro, Catarina IP, Beatriz T. Simões, João P. Borges, Miguel ARB Castanho, Paula I. P. Soares, and Vera Neves. "A promising approach: magnetic nanosystems for Alzheimer’s disease theranostics." 15.9 (2023): 2316. Abstract
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Trovão, Filipa, Viviana G. Correia, Frederico M. Lourenço, Diana O. Ribeiro, Ana Luísa Carvalho, Angelina S. Palma, and Benedita A. Pinheiro. "The structure of a Bacteroides thetaiotaomicron carbohydrate-binding module provides new insight into the recognition of complex pectic polysaccharides by the human microbiome." (2023): 100084. AbstractWebsite

TheBacteroides thetaiotaomicronhas developed a consortium of enzymes capable of overcoming steric constraints and degrading, in a sequential manner, the complex rhamnogalacturonan II (RG-II) polysaccharide. BT0996 protein acts in the initial stages of the RGII depolymerisation, where its two catalytic modules remove the terminal monosaccharides from RG-II side chains A and B. BT0996 is modular and has three putative carbohydrate-binding modules (CBMs) for which the roles in the RG-II degradation are unknown. Here, we present the characterisation of themoduleat the C-terminal domain, which we designated BT0996C. The high-resolution structure obtained by X-ray crystallography reveals that the protein displays a typical β-sandwich fold with structural similarity to CBMs assigned to families 6 and 35. The distinctive features are: 1) the presence of several charged residues at the BT0996-C surface creating a large, broad positive lysine-rich patch that encompasses the putative binding site; and 2) the absence of the highly conserved binding-site signatures observed in CBMs from families 6 and 35, such as region A tryptophan and region C asparagine. These findings hint at a binding mode of BT0996-C not yet observed in its homologues. In line with this, carbohydrate microarrays and microscale thermophoresis show the ability of BT0996-C to bind α1-4-linked polygalacturonic acid, and that electrostatic interactions are essential for the recognition of the anionic polysaccharide. The results support the hypothesis that BT0996-C may have evolved to potentiate the action of BT0996 catalytic modules on the complex structure of RG-II by binding to the polygalacturonic acid backbone sequence.

BARRULAS, RAQUEL ALEXANDRA VALADARES, DANIEL FERREIRA, VALENTINA CHIAPPARINO, MARCILEIA ZANATTA, CARLOS A. GARCÍA-GONZÁLEZ, João Paulo Miranda Ribeiro Borges, and MARTA CRISTINA PARRACHO CANÇADO CORVO. "Unlocking New Possibilities: The Synergy Between Ionic Liquids and Porous M0aterials." 2023. Abstract
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Pauleta, Sofia R., Raquel Grazina, Marta S. P. Carepo, José J. G. Moura, and Isabel Moura. "2.06 - Iron-sulfur clusters – functions of an ancient metal site." Reference Module in Chemistry, Molecular Sciences and Chemical Engineering. Elsevier, 2023. Abstract

Iron-sulfur clusters are ubiquitous and ancient prosthetic groups that are present in all kingdoms of life. In the 1960s, they were recognized to play a role in electron-transfer reactions, but since then several other functions were identified, which can be attributed to their flexible coordination and redox properties. In here, the canonical iron-sulfur clusters, as well as the ones with other coordinating ligands will be described. The chapter has also been updated to account for the advances in the knowledge of complex iron-sulfur clusters of nitrogenase and hydrogenases. In addition, the role of iron-sulfur clusters in metabolic regulation, as sensors of gases (nitric oxide, oxygen), iron and cellular content of iron-sulfur clusters, cellular redox status, and redox cycling compounds, as well as their role in DNA processing enzymes, and their involvement in catalysis of a wide range of reactions will be described. Iron-sulfur clusters also participate in their biosynthetic and repair pathways. The knowledge in this field as evolved tremendously in recent years, which would require a complete chapter devoted to it by itself, reason why the authors have decided not to include this subject in this chapter. The chapter is an update of the one published in the previous edition, focusing on the recent advances mostly on the iron-sulfur clusters involved in new catalytic functions, sensor mechanisms and DNA processing.

Moniz, António B., Marta Candeias, and Nuno Boavida. "Artificial Generative Intelligence and Work – Portugal." Generative Artificial Intelligence – Opportunities, Risks, and Policy Challenges. Eds. Bjørn Bedsted, Nicklas Bang Bådum, Reinhard Grünwald, Steffen Albrecht, Tore Tennøe, Ferran Domínguez, and Clara Marsan. Barcelona: EPTA, 2023. 70-77.report_en_2.pdf
de Oliveira, Ivone Regina, Isabela dos Santos Gonçalves, Kennedy Wallace dos Santos, Maria Carmo Lança, Tânia Vieira, Jorge Carvalho Silva, Ibrahim Fatih Cengiz, Rui Luís Reis, Joaquim Miguel Oliveira, and João Paulo Miranda Ribeiro Borges. "Biocomposite Macrospheres Based on Strontium-Bioactive Glass for Application as Bone Fillers." ACS Materials Au. 3 (2023): 646-658. AbstractWebsite

Traditional bioactive glass powders are typically composed of irregular particles that can be packed into dense configurations presenting low interconnectivity, which can limit bone ingrowth. The use of novel biocomposite sphere formulations comprising bioactive factors as bone fillers are most advantageous, as it simultaneously allows for packing the particles in a 3-dimensional manner to achieve an adequate interconnected porosity, enhanced biological performance, and ultimately a superior new bone formation. In this work, we develop and characterize novel biocomposite macrospheres of Sr-bioactive glass using sodium alginate, polylactic acid (PLA), and chitosan (CH) as encapsulating materials for finding applications as bone fillers. The biocomposite macrospheres that were obtained using PLA have a larger size distribution and higher porosity and an interconnectivity of 99.7%. Loose apatite particles were observed on the surface of macrospheres prepared with alginate and CH by means of soaking into a simulated body fluid (SBF) for 7 days. A dense apatite layer was formed on the biocomposite macrospheres' surface produced with PLA, which served to protect PLA from degradation. In vitro investigations demonstrated that biocomposite macrospheres had minimal cytotoxic effects on a human osteosarcoma cell line (SaOS-2 cells). However, the accelerated degradation of PLA due to the degradation of bioactive glass may account for the observed decrease in SaOS-2 cells viability. Among the biocomposite macrospheres, those composed of PLA exhibited the most promising characteristics for their potential use as fillers in bone tissue repair applications.

Coimbra, Rute, Miguel Moreno-Azanza, Lope Ezquerro, Carmen Nuñez-Lahuerta, José Manuel Gasca, Adrian Immenhauser, Octávio Mateus, and Fernando Rocha. "Evaluating and comparing geochemical sampling protocols in dinosaur eggshells: refining Cretaceous ecosystem research." Cretaceous Research (2023): 105632. Abstractsingle_file_coimbra_et_al._2023_cretresearch.pdfWebsite

The geochemical signatures of dinosaur eggshells represent well-established proxies in paleoenvironmental and paleobiological research. The variable sampling procedures reported in the literature, however, deserve attention. In order to evaluate the impact of different sampling methodologies on carbon and oxygen isotope and elemental concentrations, grinding was contrasted with drilling to extract powder samples from eggshell fragments collected at several locations. Eggshell data were further contrasted with surface materials, encasing matrix and compared with independent proxies using petrographic and elemental techniques. Iron and manganese elemental concentrations revealed an enrichment sequence depending on the sampling strategy for the same eggshell fragment. This pattern can be mistaken for a variable state of preservation. In contrast, carbon and oxygen isotope values exhibited only subtle differences and lacked clear trends. This suggests that isotope data are less susceptible to different methodological approaches. It is shown that drilling offers a wider range of possibilities compared to grinding (e.g., faster and less destructive). Additionally, drilled powder samples can confidently be used for elemental and isotope analysis, excluding contamination, thus providing a more accurate set of proxy data from eggshell archives.

Gomes, G., H. Rebelo, V. Lúcio, C. Cismasiu, and J. Mingote. "Experimental Research and Development on Blast Resistant Structures." Advances on Testing and Experimentation in Civil Engineering, Springer Tracts in Civil Engineering. Switzerland: Springer Nature, 2023. 1-20.
de Gomes, Gabriel Jesus, Valter José Guia da Lúcio, Corneliu Cismasiu, and José Luis Mingote. "Experimental Validation and Numerical Analysis of a High-Performance Blast Energy-Absorbing System for Building Structures." Buildings. 13.601 (2023): 1-20.