Publications

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2026
Pinto, Clara A., Filipe Costa-e-Silva, Alexandra C. Correia, José Graça, Olfa Zarrouk, Teresa S. David, José C. RODRIGUES, João S. Pereira, Maria Manuela Chaves, and Carla Pinheiro. "Cork stripping alters the seasonal carbon allocation patterns of Quercus suber in a dry year." Forest Ecology and Management. 601 (2026): 123331. AbstractWebsite

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Cardoso, F., E. Costa-Camilo, I. Duarte, MGP Carvalho, RG Sobral, JMF Almeida, and C. Pinheiro. "Mediterranean diet impact on plasma proteins: biomarker networks linking nutrition to the modulation of inflammation and oxidative stress." Frontiers in Nutrition. in press (2026).
Costa-Camilo, E., T. Martins, C. Carvalho, RG Sobral, and C. Pinheiro. "Redefining Xylella fastidiosa cultivation: An improved growth system for faster physiological and antimicrobial studies." J Microbiol Methods. 245 (2026): 107477. Abstract

Xylella fastidiosa is a xylem-limited, Gram-negative phytopathogenic bacterium responsible for severe diseases affecting a wide range of economically important crops worldwide. Its recent expansion into Europe has reinforced its status as a major quarantine pathogen. However, research on its physiology and antimicrobial susceptibility remains limited by its slow and fastidious growth under laboratory conditions, which typically requires 7–30 days for detectable development. We report a new laboratory-adapted culture medium, XFG; that supports robust growth of X. fastidiosa strain DSM 10026/PYCC 9740 in both liquid and solid formulations compatible with established physiological and antimicrobial testing protocols. In liquid culture, bacterial populations reached the stationary phase within three days, while visible and isolated colonies formed on solid medium within the same time frame. Growth kinetics were confirmed by optical density measurements, demonstrating a shortened lag phase and reproducible exponential growth. Proof-of-concept antimicrobial susceptibility testing revealed high sensitivity to rifampicin and tetracycline (MIC = 0.25 μg/mL), and to chloramphenicol and ampicillin (MIC = 0.99 μg/mL). These MIC values are consistent with those previously reported using conventional media, supporting the robustness and applicability of the proposed system. Overall, these results establish XFG as a system for reproducible X. fastidiosa growth under laboratory conditions, enabling high-throughput phenotyping of this important plant pathogen.

2025
de Almeida, João M. G. C. F., Cândido Pinto Ricardo, and Carla Pinheiro. "Unveiling DIR proteins involved in cork formation: insights from transcriptome analysis and cis-element co-occurrence." Theoretical and Experimental Plant Physiology. 37 (2025). AbstractWebsite
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Costa-Camilo, Eduardo, Fátima Cardoso, Isabel Duarte, Graça P. Carvalho, João M. G. C. F. de Almeida, Rita G. Sobral, and Carla Pinheiro. "Mediterranean Diet as a Nutraceutical and Sustainable Model for Health and Environmental Wellbeing." Gastronomy. 3 (2025): 17. AbstractWebsite
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Carréra, Jéfyne Campos, Leonor Guerra-Guimarães, John Charles D’Auria, Luana de Jesus Sartori, Carla Pinheiro, Vânia Aparecida Silva, Margarete Lordelo Volpato, Gladyston Rodrigues Carvalho, and Fabio Akira Mori. "Non-targeted metabolomic analysis of field-grown Coffea arabica cultivars reveals distinct leaf metabolic signatures." Theoretical and Experimental Plant Physiology. 37 (2025). AbstractWebsite
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Pinheiro, Carla, Eduardo Costa-Camilo, Manzur-E-Mohsina Ferdous, Carina Barcelos, Isabel Duarte, Leonor Guerra-Guimarães, and Thomas Roitsch. "Physiological and Metabolic Responses of Chickpea to Post-Flowering High Temperatures and Limited Water Availability." (2025). AbstractWebsite
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2024
Eduardo Costa Camilo, Beatriz Rovisco, Isabel Duarte Carla Pinheiro Graça Carvalho P. Soup was an emotional trigger., 2024. Abstract

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Costa-Camilo, Eduardo, Beatriz Rovisco, Isabel Duarte, Carla Pinheiro, and Graça P. Carvalho. "Future-Proof a Mediterranean Soup." Lecture Notes on Multidisciplinary Industrial Engineering. Springer Nature Switzerland, 2024. 329-336. Abstract
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Costa-Camilo, Eduardo, Beatriz Rovisco, Isabel Duarte, Carla Pinheiro, and Graça P. Carvalho. "Soup Was an Emotional Trigger." Lecture Notes on Multidisciplinary Industrial Engineering. Springer Nature Switzerland, 2024. 337-342. Abstract
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2023
Guerra-Guimarães, Leonor, Carla Pinheiro, Ana Sofia F. Oliveira, Andrea Mira-Jover, Javier Valverde, Fernanda A. F. de Guedes, Herlander Azevedo, Vitor Várzea, and Antonio Jesús Muñoz Pajares. "The chloroplast protein HCF164 is predicted to be associated with Coffea SH9 resistance factor against Hemileia vastatrix." Scientific Reports. 13 (2023). AbstractWebsite
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Guerra-Guimarães, Leonor, Herlander Azevedo, Inês Diniz, Jéfyne Carrera, Fernanda A. F. Guedes, Carla Pinheiro, Helena Gil Azinheira, and et al. "Integrative transcriptomic and metabolomic approaches to unravel the resistance profile of Kawisari coffee against Hemileia vastatrix." ASIC, 2023. Abstract
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Carrera JC, Sartori LJ, Leonor Guerra-Guimarães, Volpato ML Carvalho GR D’Auria JC Mori FA Pinheiro C, Silva VA, Jéfyne Campos Carréra, Luana Jesus de Sartori, Carla Pinheiro, Vânia Aparecida Silva, and et al. "Leaf sugar metabolomic profiling reveals differences between Coffea arabica cultivars in two locations of Cerrado Mineiro (Brazil).". Hanoi 2023. 88. Abstract
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Costa-Camilo, Eduardo, Rita G. Sobral, and Carla Pinheiro Antimicrobial and antioxidant activity of cork polar extractives., 2023. Abstract
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Guerra-Guimarães, Leonor, Carla Pinheiro, Ana Sofia F. Oliveira, Andrea Mira-Jover, Javier Valverde, Fernanda A. F. de Guedes, Herlander Azevedo, Vitor Várzea, and Antonio Jesús Muñoz Pajares. "Publisher Correction: The chloroplast protein HCF164 is predicted to be associated with Coffea SH9 resistance factor against Hemileia vastatrix." Scientific Reports (2023). AbstractWebsite
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Guerra-Guimarães, Leonor, Jéfyne Carrera, Marina Rosário do Santos, Carla Pinheiro, Manzur E-MohsinaFerdous, Inês Diniz, Andreia Loureiro, and et al. "Assessment of carbon metabolism of Coffee Kawisari hybrid challenged by Hemileia vastatrix, the causal agent of Coffee Leaf Rust.". 2023. Abstract
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L, Guerra-Guimarães, Jéfyne Carrera, Marina Rosário do Santos, Carla Pinheiro, Manzur-E-Mohsina Ferdous, Inês Diniz, Andreia Loureiro, and et al. "Assessment of carbon metabolism of Coffee Kawisari hybrid challenged by Hemileia vastatrix, the causal agent of Coffee Leaf Rust. (Oral Presentation - LGG speaker)." Thessaloniki 2023. 9. Abstract
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Pinheiro, Carla, Isabel Duarte, Leonor Guerra-Guimarães, Isa C. Ribeiro, Graça M. ª Carvalho, Sébastien Planchon, Jenny Renaut, and Thomas Roitsch. "Flowering under stress: phenomics and proteomics approaches to chickpea grain yield and quality.". 2023. Abstract
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Duarte, Isabel, Muhammad Imtiaz, Carla Pinheiro, Nuno Simões, and Manuela Chaves. "Adaptation and Yield Stability for chickpea genotypes to the Mediterranean basin." International Journal of Plant Biology & Research. 11 (2023). AbstractWebsite
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Pinheiro, Carla, Giovanni Emiliani, Giovanni Marino, Ana S. Fortunato, Matthew Haworth, Anna De Carlo, Maria Manuela Chaves, Francesco Loreto, and Mauro Centritto. "Metabolic Background, Not Photosynthetic Physiology, Determines Drought and Drought Recovery Responses in C3 and C2 Moricandias." International Journal of Molecular Sciences. 24 (2023): 4094. AbstractWebsite
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Pinheiro, Carla. "Adaptation and Yield Stability for chickpea genotypes to the Mediterranean basin." International Journal of Plant Biology & Research. 11 (2023): 1134. Abstract
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