Rui Oliveira

von Stosch, M., R. Oliveira, J. Peres, and Feyo S. de Azevedo. "{A hybrid semi-parametric approach to dynamical modelling of biological systems based on delayed differential equations}." {NEW BIOTECHNOLOGY}. {25} (Submitted): {S350}. Abstract

von Stosch, M., R. Oliveira, J. Peres, and Feyo S. de Azevedo. "{A novel identification method for hybrid (N)PLS dynamical systems with application to bioprocesses}." {EXPERT SYSTEMS WITH APPLICATIONS}. {38} (Submitted): {10862-10874}. Abstract

von Stosch, Moritz, Joana Peres, Sebastiao Feyo de Azevedo, and Rui Oliveira. "{Modelling biochemical networks with intrinsic time delays: a hybrid semi-parametric approach}." {BMC SYSTEMS BIOLOGY}. {4} (Submitted). Abstract

Guerreiro, L., P. M. Pereira, I. M. Fonseca, R. M. Martin-Aranda, A. M. Ramos, J. M. L. Dias, R. Oliveira, and J. Vital. "{PVA embedded hydrotalcite membranes as basic catalysts for biodiesel synthesis by soybean oil methanolysis}." {CATALYSIS TODAY}. {156} (Submitted): {191-197}. Abstract

Carrondo, Manuel, Nuno Carinhas, Vicente Bernal, Cristina Peixoto, Rui Oliveira, and Paula Alves. "{Baculovirus for gene therapy: use of metabolomics for production and membranes for purification}." {HUMAN GENE THERAPY}. {20} (Submitted): {1401-1402}. Abstract

Pardelha, F., M. G. E. Albuquerque, M. A. M. Reis, R. Oliveira, and J. M. L. Dias. "{Metabolic modeling of polyhydroxyalkanoates (PHA) production from complex mixtures of competing volatile fatty acids (VFA) by mixed microbial cultures (MMC)}." {JOURNAL OF BIOTECHNOLOGY}. {150} (Submitted): {S565}. Abstract

Ferreira, Ana R., Joao M. L. Dias, Ana P. Teixeira, Nuno Carinhas, Rui M. C. Portela, Ines A. Isidro, Moritz von Stosch, and Rui Oliveira. "{Projection to latent pathways (PLP): a constrained projection to latent variables (PLS) method for elementary flux modes discrimination}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract

Freitas, Filomena, Vitor D. Alves, Joana Pais, Monica Carvalheira, Nuno Costa, Rui Oliveira, and Maria A. M. Reis. "{Production of a new exopolysaccharide (EPS) by Pseudomonas oleovorans NRRL B-14682 grown on glycerol}." {PROCESS BIOCHEMISTRY}. {45} (Submitted): {297-305}. Abstract

Dias, Joao M. L., Filipa Pardelha, Mario Eusebio, Maria A. M. Reis, and Rui Oliveira. "{On-Line Adaptive Metabolic Flux Analysis: Application to PHB Production by Mixed Microbial Cultures}." {BIOTECHNOLOGY PROGRESS}. {25} (Submitted): {390-398}. Abstract

Teixeira, Ana P., Carla A. M. Portugal, Nuno Carinhas, Joao M. L. Dias, Joao P. Crespo, Paula M. Alves, M. J. T. Carrondo, and Rui Oliveira. "{In Situ 2D Fluorometry and Chemometric Monitoring of Mammalian Cell Cultures}." {BIOTECHNOLOGY AND BIOENGINEERING}. {102} (Submitted): {1098-1106}. Abstract

Roldao, Antonio, Helena L. A. Vieira, Annie Charpilienne, Didier Poncet, Polly Roy, Manuel J. T. Carrondo, Paula M. Alves, and R. Oliveira. "{Modeling rotavirus-like particles production in a baculovirus expression vector system: Infection kinetics, baculovirus DNA replication, mRNA synthesis and protein production}." {JOURNAL OF BIOTECHNOLOGY}. {128} (Submitted): {875-894}. Abstract

Pardelha, Filipa, Maria G. E. Albuquerque, Maria A. M. Reis, Rui Oliveira, and Joao M. L. Dias. "{Dynamic metabolic modelling of volatile fatty acids conversion to polyhydroxyalkanoates by a mixed microbial culture}." {NEW BIOTECHNOLOGY}. {31} (Submitted): {335-344}. Abstract

Simon, Levente L., Hajnalka Pataki, Gyoergy Marosi, Fabian Meemken, Konrad Hungerbuehler, Alfons Baiker, Srinivas Tummala, Brian Glennon, Martin Kuentz, Gerry Steele, Herman J. M. Kramer, James W. Rydzak, Zengping Chen, Julian Morris, Francois Kjell, Ravendra Singh, Rafiqul Gani, Krist V. Gernaey, Marjatta Louhi-Kultanen, John O'Reilly, Niklas Sandler, Osmo Antikainen, Jouko Yliruusi, Patrick Frohberg, Joachim Ulrich, Richard D. Braatz, Tom Leyssens, Moritz von Stosch, Rui Oliveira, Reginald B. H. Tan, Huiquan Wu, Mansoor Khan, Des O'Grady, Anjan Pandey, Remko Westra, Emmanuel Delle-Case, Detlef Pape, Daniele Angelosante, Yannick Maret, Olivier Steiger, Miklos Lenner, Kaoutar Abbou-Oucherif, Zoltan K. Nagy, James D. Litster, Vamsi Krishna Kamaraju, and Min-Sen Chiu. "{Assessment of Recent Process Analytical Technology (PAT) Trends: A Multiauthor Review}." {ORGANIC PROCESS RESEARCH & DEVELOPMENT}. {19} (Submitted): {3-62}. Abstract

Freitas, Filomena, Vitor D. Alves, Joana Pais, Nuno Costa, Cristina Oliveira, Luis Mafra, Loic Hilliou, Rui Oliveira, and Maria A. M. Reis. "{Characterization of an extracellular polysaccharide produced by a Pseudomonas strain grown on glycerol}." {BIORESOURCE TECHNOLOGY}. {100} (Submitted): {859-865}. Abstract

von Stosch, Moritz, Rui Oliveira, Joana Peres, and Sebastiao Feyo de Azevedo. "{Hybrid semi-parametric modeling in process systems engineering: Past, present and future}." {COMPUTERS & CHEMICAL ENGINEERING}. {60} (Submitted): {86-101}. Abstract

Pardelha, Filipa, Maria G. E. Albuquerque, Maria A. M. Reis, Joao M. L. Dias, and Rui Oliveira. "{Flux balance analysis of mixed microbial cultures: Application to the production of polyhydroxyalkanoates from complex mixtures of volatile fatty acids}." {JOURNAL OF BIOTECHNOLOGY}. {162} (Submitted): {336-345}. Abstract

von Stosch, Moritz, Rui Oliveira, Joana Peres, and Sebastiao Feyo de Azevedo. "{A general hybrid semi-parametric process control framework}." {JOURNAL OF PROCESS CONTROL}. {22} (Submitted): {1171-1181}. Abstract

Pardelha, F., M. G. E. Albuquerque, G. Carvalho, M. A. M. Reis, J. M. L. Dias, and R. Oliveira. "{Segregated flux balance analysis constrained by population structure/function data: The case of PHA production by mixed microbial cultures}." {BIOTECHNOLOGY AND BIOENGINEERING}. {110} (Submitted): {2267-2276}. Abstract

Dias, Joao M. L., Filipa Pardelha, Mario Eusebio, Maria A. M. Reis, and Rui Oliveira. "{On-line monitoring of PHB production by mixed microbial cultures using respirometry, titrimetry and chemometric modelling}." {PROCESS BIOCHEMISTRY}. {44} (Submitted): {419-427}. Abstract

Peres, J., R. Oliveira, and Feyo S. de Azevedo. "{Bioprocess hybrid parametric/nonparametric modelling based on the concept of mixture of experts}." {BIOCHEMICAL ENGINEERING JOURNAL}. {39} (Submitted): {190-206}. Abstract

Oliveira, R., A. Cunha, J. Clemente, and M. J. T. Carrondo. "{Adaptive DO-based control of substrate feeding in high cell density cultures operated under oxygen transfer limitation}." {Adaptive and Natural Computing Algorithms}. Eds. B. {Ribeiro, RF Albrecht, A. Dobnikar, DW Pearson, and NC} Steele. {SPRINGER COMPUTER SCIENCE}. Submitted. {300-303}. Abstract

Oliveira, R., and R. Salcedo. "{Benchmark testing of simulated annealing, adaptive random search and genetic algorithms for the global optimization of bioprocesses}." {Adaptive and Natural Computing Algorithms}. Eds. B. {Ribeiro, RF Albrecht, A. Dobnikar, DW Pearson, and NC} Steele. {SPRINGER COMPUTER SCIENCE}. Submitted. {292-295}. Abstract

Freitas, F., J. Pais, V. D. Alves, M. Carvalheira, N. Costa, R. Oliveira, and M. A. M. Reis. "{Conversion of Glycerol-rich Product (GRP) into Biopolymers}." {CLEAN TECHNOLOGY 2008: BIO ENERGY, RENEWABLES, GREEN BUILDING, SMART GRID, STORAGE, AND WATER}. Eds. M. {Laudon, B. Romanowicz, and DL} Laird. {Clean Technol & Sustainable Ind Org; Greenberg Traurig LLP; Jackson Walker LLP; IDA Ireland; Opportunity Houston; Alston & Bird LLP; K & L Gates; Buchanan Ingersoll & Rooney PC; Foley & Larder, LLP; Pacific Crest Securities; RockPort Capital Partners; Fi, Submitted. {552-553}. Abstract

Teixeira, A., A. Cunha, J. Clemente, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Dynamic modelling and optimisation of a mammalian cells process using hybrid grey-box systems}." {Adaptive and Natural Computing Algorithms}. Eds. B. {Ribeiro, RF Albrecht, A. Dobnikar, DW Pearson, and NC} Steele. {SPRINGER COMPUTER SCIENCE}. Submitted. {296-299}. Abstract

Teixeira, A., C. M. L. Alves, P. M. Alves, M. J. T. Carrondo, and R. Oliveira. "{Hybrid metabolic flux analysis/data-driven modelling of bioprocesses}." {16TH EUROPEAN SYMPOSIUM ON COMPUTER AIDED PROCESS ENGINEERING AND 9TH INTERNATIONAL SYMPOSIUM ON PROCESS SYSTEMS ENGINEERING}. Eds. W. {Marquardt, and C. } Pantelides. Vol. {21}. {Computer-Aided Chemical Engineering}, {21}. Submitted. {1667-1672}. Abstract