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Submitted
Jones, D. B., E. Ali, C. G. Ning, F. Ferreira da Silva, O. Ingolfsson, M. C. A. Lopes, H. S. Chakraborty, D. H. Madison, and M. J. Brunger. "{A dynamical (e,2e) investigation into the ionization of the outermost orbitals of R-carvone}." {JOURNAL OF CHEMICAL PHYSICS}. {151} (Submitted). Abstract
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Hoshino, M., S. Matejcik, Y. Nunes, F. Ferreira da Silva, P. Limao-Vieira, and H. Tanaka. "{Negative ion formation through dissociative electron attachment to GeH4: Comparative studies with CH4 and SiH4}." {INTERNATIONAL JOURNAL OF MASS SPECTROMETRY}. {306} (Submitted): {51-56}. Abstract
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Da Silva, Ferreira F., E. Lange, P. Limao-Vieira, N. C. Jones, S. V. Hoffmann, M. - J. Hubin-Franskin, J. Delwiche, M. J. Brunger, R. F. C. Neves, M. C. A. Lopes, E. M. de Oliveira, R. F. da Costa, M. T. N. do Varella, M. H. F. Bettega, F. Blanco, G. Garcia, M. A. P. Lima, and D. B. Jones. "{Electronic excitation of furfural as probed by high-resolution vacuum ultraviolet spectroscopy, electron energy loss spectroscopy, and ab initio calculations}." {JOURNAL OF CHEMICAL PHYSICS}. {143} (Submitted). Abstract
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Neustetter, Michael, Filipe Ferreira da Silva, and Stephan Denifl. "{Electron interactions with the focused electron beam induced processing (FEBID) precursor tungsten hexachloride}." {RAPID COMMUNICATIONS IN MASS SPECTROMETRY}. {30} (Submitted): {1139-1144}. Abstract
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Neustetter, Michael, Julia Aysina, Filipe Ferreira da Silva, and Stephan Denifl. "{The Effect of Solvation on Electron Attachment to Pure and Hydrated Pyrimidine Clusters}." {ANGEWANDTE CHEMIE-INTERNATIONAL EDITION}. {54} (Submitted): {9124-9126}. Abstract
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Simon, Levente L., Hajnalka Pataki, Gyoergy Marosi, Fabian Meemken, Konrad Hungerbuehler, Alfons Baiker, Srinivas Tummala, Brian Glennon, Martin Kuentz, Gerry Steele, Herman J. M. Kramer, James W. Rydzak, Zengping Chen, Julian Morris, Francois Kjell, Ravendra Singh, Rafiqul Gani, Krist V. Gernaey, Marjatta Louhi-Kultanen, John O'Reilly, Niklas Sandler, Osmo Antikainen, Jouko Yliruusi, Patrick Frohberg, Joachim Ulrich, Richard D. Braatz, Tom Leyssens, Moritz von Stosch, Rui Oliveira, Reginald B. H. Tan, Huiquan Wu, Mansoor Khan, Des O'Grady, Anjan Pandey, Remko Westra, Emmanuel Delle-Case, Detlef Pape, Daniele Angelosante, Yannick Maret, Olivier Steiger, Miklos Lenner, Kaoutar Abbou-Oucherif, Zoltan K. Nagy, James D. Litster, Vamsi Krishna Kamaraju, and Min-Sen Chiu. "{Assessment of Recent Process Analytical Technology (PAT) Trends: A Multiauthor Review}." {ORGANIC PROCESS RESEARCH & DEVELOPMENT}. {19} (Submitted): {3-62}. Abstract
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Carrondo, Manuel J. T., Paula M. Alves, Nuno Carinhas, Jarka Glassey, Friedemann Hesse, Otto-Wilhelm Merten, Martina Micheletti, Thomas Noll, Rui Oliveira, Udo Reichl, Arne Staby, Ana P. Teixeira, Henry Weichert, and Carl-Fredrik Mandenius. "{How can measurement, monitoring, modeling and control advance cell culture in industrial biotechnology?}." {BIOTECHNOLOGY JOURNAL}. {7} (Submitted): {1522-1529}. Abstract
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Santos, Lidia, Joana P. Neto, Ana Crespo, Daniela Nunes, Nuno Costa, Isabel M. Fonseca, Pedro Barquinha, Luis Pereira, Jorge Silva, Rodrigo Martins, and Elvira Fortunato. "{WO3 Nanoparticle-Based Conformable pH Sensor}." {ACS APPLIED MATERIALS & INTERFACES}. {6} (Submitted): {12226-12234}. Abstract

{pH is a vital physiological parameter that can be used for disease diagnosis and treatment as well as in monitoring other biological processes. Metal/metal oxide based pH sensors have several advantages regarding their reliability, miniaturization, and cost-effectiveness, which are critical characteristics for in vivo applications. In this work, WO3 nanoparticles were electrodeposited on flexible substrates over metal electrodes with a sensing area of 1 mm(2). These sensors show a sensitivity of -56.7 +/- 1.3 mV/pH, in a wide pH range of 9 to 5. A proof of concept is also demonstrated using a flexible reference electrode in solid electrolyte with a curved surface. A good balance between the performance parameters (sensitivity), the production costs, and simplicity of the sensors was accomplished, as required for wearable biomedical devices.}

Zanarini, Simone, Nadia Garino, Jijeesh Ravi Nair, Carlotta Francia, Pawel Jerzy Wojcik, Luis Pereira, Elvira Fortunato, Rodrigo Martins, Silvia Bodoardo, and Nerino Penazzi. "{Contrast Enhancement in Polymeric Electrochromic Devices Encompassing Room Temperature Ionic Liquids}." {INTERNATIONAL JOURNAL OF ELECTROCHEMICAL SCIENCE}. {9} (Submitted): {1650-1662}. Abstract

{We report the preparation and spectro-electrochemical characterization of electrochromic devices (ECD) combining inkjet-printed WO3 as cathode and electro-deposited V2O5 as anode. ECD were prepared for the first time with an optimized formulation of gel polymer electrolyte based on Bisphenol A ethoxylate dimethacrylate and Poly(ethylene glycol) methyl ether methacrylate (BEMA/PEGMA) encompassing the Room Temperature Ionic Liquid (RTIL, 1-Ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide) as solvent. The UV-VIS spectrum of ECD was recorded at different potentials during Li+ insertion and de-insertion; additionally the Percent Trasmittance (T%) of ECD vs. time was investigated during repeated bleaching and coloring cycles allowing thus the estimation of switching times and device stability. Due to the lower ionic conductivity and the apparent superior solvent permeability within WO3 active layer, RTIL containing ECD showed slower switching times, but higher contrast with respect to the similar ones with EC/DEC as solvent. These results indicate that the ECD containing environment-friendly RTIL electrolytes are suitable for applications requiring high contrast, high safety and moderately fast switching times.}

Edtbauer, A., P. Sulzer, A. Mauracher, C. Mitterdorfer, Ferreira F. Da Silva, S. Denifl, T. D. Maerk, M. Probst, Y. Nunes, P. Limao-Vieira, and P. Scheier. "{Dissociative electron attachment to pentaerythritol tetranitrate: Significant fragmentation near 0 eV}." {JOURNAL OF CHEMICAL PHYSICS}. {132} (Submitted). Abstract
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Neves, Nuno, Raquel Barros, Elsa Antunes, Elvira Fortunato, Rodrigo Martins, and Isabel Ferreira. "ALUMINUM-DOPED ZINC OXIDE-AZO SPUTTERING TARGETS OBTAINED FROM NANOPOWDERS: PROCESSING AND APPLICATION." (Submitted). Abstract
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Nunes, Isabel L., and Cruz V. Machado. "A Fuzzy Expert System Model to Deal with Supply Chain Disturbances." (Submitted). Abstract
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Jacinto, Celeste, and Isabel L. Nunes. "Gestão Integrada: uma boa estratégia para todos?" Organizações e Trabalho (Submitted). Abstract
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Jacinto, Celeste, and Isabel L. Nunes. "Gestão Integrada: uma boa estratégia para todos?" Organizações e Trabalho (Submitted). Abstract
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Neustetter, Michael, Julia Aysina, Filipe Ferreira da Silva, and Stephan Denifl. "{DEA to bare and water-solvated pyrimidine clusters}." {XXIX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2015), PTS 1-12}. Eds. C. {Diaz, I. Rabadan, G. Garcia, L. Mendez, and F. } Martin. Vol. {635}. {Journal of Physics Conference Series}, {635}. Submitted. Abstract
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Almeida, D., G. Martins, F. Ferreira da Silva, Y. Nunes, G. Garcia, and P. Limao-Vieira. "{Demethylation enhancement of 3-methyl-uracil and 1-methyl-thymine in atom-molecule collisions}." {XXVII INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC AND ATOMIC COLLISIONS (ICPEAC 2011), PTS 1-15}. Eds. ID {Williams, HW VanDerHart, JF McCann, and DSF} Crothers. Vol. {388}. {Journal of Physics Conference Series}, {388}. Submitted. Abstract
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Ferreira da Silva, F., D. Almeida, R. Antunes, G. Martins, Y. Nunes, S. Eden, G. Garcia, and P. Limao-Vieira. "{Electron transfer processes in potassium collisions with 5-fluorouracil and 5-chlorouracil}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {13} (Submitted): {21621-21629}. Abstract
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Almeida, D., R. Antunes, G. Martins, S. Eden, Ferreira F. Da Silva, Y. Nunes, G. Garcia, and P. Limao-Vieira. "{Electron transfer-induced fragmentation of thymine and uracil in atom-molecule collisions}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {13} (Submitted): {15657-15665}. Abstract
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Khreis, J., J. Ameixa, M. Neustetter, J. Reitshammer, F. Ferreira da Silva, and S. Denifl. "{Low-energy electron interactions with chromium hexacarbonyl Cr(CO)(6)}." {XXX INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC, AND ATOMIC COLLISIONS (ICPEAC2017)}. Eds. A. {Bray, S. Hodgman, J. Machacek, and A. } Kheifets. Vol. {875}. {Journal of Physics Conference Series}, {875}. Submitted. Abstract
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Ferreira da Silva, F., D. Almeida, G. Martins, Y. Nunes, G. Garcia, and P. Limao-Vieira. "{Site and bond selective H- formation in methylated pyrimidine bases driven by potassium molecule collisions}." {XXVII INTERNATIONAL CONFERENCE ON PHOTONIC, ELECTRONIC AND ATOMIC COLLISIONS (ICPEAC 2011), PTS 1-15}. Eds. ID {Williams, HW VanDerHart, JF McCann, and DSF} Crothers. Vol. {388}. {Journal of Physics Conference Series}, {388}. Submitted. Abstract
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Da Silva, Ferreira F., M. Nobre, A. Fernandes, R. Antunes, D. Almeida, G. Garcia, N. J. Mason, and P. Limao-Vieira. "{Spectroscopic studies of ketones as a marker for patients with diabetes}." {RADIATION DAMAGE IN BIOMOLECULAR SYSTEMS}. Ed. KG} {McGuigan. Vol. {101}. {Journal of Physics Conference Series}, {101}. Submitted. Abstract
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Da Silva, Ferreira F., D. Almeida, G. Martins, A. R. Milosavljevic, B. P. Marinkovic, S. V. Hoffmann, N. J. Mason, Y. Nunes, G. Garcia, and P. Limao-Vieira. "{The electronic states of pyrimidine studied by VUV photoabsorption and electron energy-loss spectroscopy}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {12} (Submitted): {6717-6731}. Abstract
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Nobre, M., A. Fernandes, Ferreira F. Da Silva, R. Antunes, D. Almeida, V. Kokhan, S. V. Hoffmann, N. J. Mason, S. Eden, and P. Limao-Vieira. "{The VUV electronic spectroscopy of acetone studied by synchrotron radiation}." {PHYSICAL CHEMISTRY CHEMICAL PHYSICS}. {10} (Submitted): {550-560}. Abstract
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2025
Duarte, Marlene, Ana Luísa Carvalho, Magda C. Ferreira, Beatriz Caires, Maria João Romão, José A. M. Prates, Shabir Najmudin, Edward A. Bayer, Carlos MGA. Fontes, and Pedro Bule. "Tripartite binding mode of cohesin-dockerin complexes from Ruminococcus flavefaciens involving naturally truncated dockerins." 301.7 (2025): 110325. AbstractWebsite

Polysaccharides in plant cell walls serve as a rich carbon and energy source, yet their structural complexity presents a barrier to efficient degradation. To address this, anaerobic microorganisms like R. flavefaciens have developed sophisticated multi-enzyme complexes known as cellulosomes, which enable the efficient breakdown of these recalcitrant polysaccharides. These complexes are assembled through high-affinity interactions between cohesin (Coh) modules in scaffoldin proteins and dockerin (Doc) modules in cellulosomal enzymes. R. flavefaciens FD-1 harbors one of the most intricate cellulosomes described to date, comprising over 200 Doc-containing proteins encoded in its genome. Despite substantial research on this cellulosome, the role of a group of truncated but functional dockerins, known as group-2 Docs, remains unclear. In this study, we present a detailed structural and binding analysis of a Coh-Doc complex involving the cohesin from the cell-anchoring scaffoldin ScaE and a group-2 Doc that bears only one of the two Ca+2-coordinating loops that characterise the canonical Docs. Our findings reveal a novel tripartite binding mechanism, in which the cohesin can simultaneously bind two distinct dockerin units in three alternative conformations. This discovery provides new insights into the modular versatility of the R. flavefaciens cellulosome and sheds light on the mechanisms that enhance its efficiency in polysaccharide degradation.

2024
Shankar, Kasturika, Marie N. Sorin, Himanshu Sharma, Oskar Skoglund, Selma Dahmane, Josy Ter Beek, Solomon Tesfalidet, Louise Nenzén, and Lars-Anders Carlson. "In vitroreconstitution reveals membrane clustering and RNA recruitment by the enteroviral AAA+ ATPase 2C." PLOS Pathogens. 20(8): e10 (2024). AbstractWebsite
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