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2009
Martins, R., Leandro Raniero, Luis Pereira, Daniel Costa, Hugo Aguas, Sonia Pereira, Leonardo Silva, A. Gonçalves, I. Ferreira, and E. Fortunato. "Nanostructured silicon and its application to solar cells, position sensors and thin film transistors." Philosophical Magazine. 89 (2009): 2699-2721. Abstract
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Surzhykov, A., J. P. Santos, P. Amaro, and P. Indelicato. "Negative-continuum effects on the two-photon decay rates of hydrogenlike ions." Physical Review A (Atomic, Molecular, and Optical Physics). 80 (2009): 052511. AbstractWebsite
Two-photon decay of hydrogenlike ions is studied within the framework of second-order perturbation theory, based on the relativistic Dirac's equation. Special attention is paid to the effects arising from the summation over the negative-energy (intermediate virtual) states that occur in such a framework. In order to investigate the role of these states, detailed calculations have been carried out for the 2s1/2–>1s1/2 and 2p1/2–>1s1/2 transitions in neutral hydrogen H as well as for hydrogenlike xenon Xe53+ and uranium U91+ ions. We found that for a correct evaluation of the total and energy-differential decay rates, summation over the negative-energy part of Dirac's spectrum should be properly taken into account both for high-Z and low-Z atomic systems.
Surzhykov, A., J. P. Santos, P. Amaro, and P. Indelicato. "Negative-continuum effects on the two-photon decay rates of hydrogenlike ions." Physical Review A. 80 (2009): 052511. AbstractWebsite

Two-photon decay of hydrogenlike ions is studied within the framework of second-order perturbation theory, based on the relativistic Dirac's equation. Special attention is paid to the effects arising from the summation over the negative-energy (intermediate virtual) states that occur in such a framework. In order to investigate the role of these states, detailed calculations have been carried out for the 2s1/2-->1s1/2 and 2p1/2-->1s1/2 transitions in neutral hydrogen H as well as for hydrogenlike xenon Xe53+ and uranium U91+ ions. We found that for a correct evaluation of the total and energy-differential decay rates, summation over the negative-energy part of Dirac's spectrum should be properly taken into account both for high-Z and low-Z atomic systems.

Sergeeva, V., A. Alves, and AJL Phillips. "Neofusicoccum luteum associated with leaf necrosis and fruit rot of olives in New South Wales, Australia." Phytopathologia Mediterranea. 48 (2009): 294-298. Abstract
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Amaral, P., L. M. Fernandes, J. Júdice, and H. D. Sherali. "On optimal zero-preserving corrections for inconsistent linear systems." Journal of Global Optimization. 45 (2009): 645-666. Abstract

This paper addresses the problem of finding an optimal correction of an inconsistent linear system, where only the nonzero coefficients of the constraint matrix are allowed to be perturbed for reconstructing a consistent system. Using the Frobenius norm as a measure of the distance to feasibility, a nonconvex minimization problem is formulated, whose objective function is a sum of fractional functions. A branch-and-bound algorithm for solving this nonconvex program is proposed, based on suitably overestimating the denominator function for computing lower bounds. Computational experience is presented to demonstrate the efficacy of this approach.

Ribeiro, Celso, Paulo J. Gomes, Paulo A. Ribeiro, Maria Raposo, Hugo Águas, Pedro Mendonça dos Santos, Beatriz Borges, and Pedro Brogueira. "Polymeric Film Sensors based on PAH-PAZO Ionic Self-assembled Multi-nanolayers." BIODEVICES. 2009. 458-461. Abstract
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Freire, Filipe, Maria Joao Romao, Anjos L. Macedo, Susana S. Aveiro, Brian J. Goodfellow, and Ana Luisa Carvalho. "Preliminary structural characterization of human SOUL, a haem-binding protein." Acta Crystallographica Section F-Structural Biology and Crystallization Communications. 65 (2009): 723-726. Abstract
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Gomes, Margarida M., Rita A. Ribeiro, and Paula Amaral. "Reducing the Number of Membership Functions in Linguistic Variables." Livro de actas do 14º Congresso da Associação Portuguesa de Investigação Operacional, IO 2009, 7-9 September 2009. 2009. 75-82. Abstract
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Amaro, P., J. P. Santos, F. Parente, A. Surzhykov, and P. Indelicato. "Resonance effects on the two-photon emission from hydrogenic ions." Physical Review A (Atomic, Molecular, and Optical Physics). 79 (2009): 062504. AbstractWebsite
A theoretical study of the all two-photon transitions from initial bound states with ni=2,3 in hydrogenic ions is presented. High-precision values of relativistic decay rates for ions with nuclear charge in the range 1<=Z<=92 are obtained through the use of finite basis sets for the Dirac equation constructed from B splines. We also report the spectral (energy) distributions of several resonant transitions, which exhibit interesting structures, such as zeros in the emission spectrum, indicating that two-photon emission is strongly suppressed at certain frequencies. We compare two different approaches (the line profile approach and the QED approach based on the analysis of the relativistic two-loop self-energy) to regularize the resonant contribution to the decay rate. Predictions for the pure two-photon contributions obtained in these approaches are found to be in good numerical agreement.
Amaro, P., J. P. Santos, F. Parente, A. Surzhykov, and P. Indelicato. "Resonance effects on the two-photon emission from hydrogenic ions." Physical Review A. 79 (2009): 062504. AbstractWebsite

A theoretical study of the all two-photon transitions from initial bound states with ni=2,3 in hydrogenic ions is presented. High-precision values of relativistic decay rates for ions with nuclear charge in the range 1<=Z<=92 are obtained through the use of finite basis sets for the Dirac equation constructed from B splines. We also report the spectral (energy) distributions of several resonant transitions, which exhibit interesting structures, such as zeros in the emission spectrum, indicating that two-photon emission is strongly suppressed at certain frequencies. We compare two different approaches (the line profile approach and the QED approach based on the analysis of the relativistic two-loop self-energy) to regularize the resonant contribution to the decay rate. Predictions for the pure two-photon contributions obtained in these approaches are found to be in good numerical agreement.

Agra, A., D. M. Cardoso, J. O. Cerdeira, M. Miranda, and E. Rocha. "Solving huge size instances of the optimal diversity management problem." Journal of Mathematical Sciences. 161 (2009): 956-960. Abstract
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Alves, E.a, Franco Barradas Munnik Monteiro Peres Wang Martins Fortunato N. a N. P. "Structural and optical properties of nitrogen doped ZnO films." Vacuum. 83 (2009): 1274-1278. AbstractWebsite

Zinc oxide is getting an enormous attention due to its potential applications in a variety of fields such as optoelectronics, spintronics and sensors. The renewed interest in this wide band gap oxide semiconductor relies on its direct high energy gap (Eg ∼ 3.437 eV at low temperatures) and large exciton binding energy. However to reach the stage of device production the difficulty to produce in a reproducible way p-type doping must be overcome. In this study we discuss the structural and optical properties of ZnO films doped with nitrogen, a potential p-type dopant. The films were deposited by magnetron sputtering using different conditions and substrates. The composition and structural properties of the films were studied combining X-ray diffraction (XRD), Rutherford backscattering (RBS), and heavy ion elastic recoil detection analysis (HI-ERDA). The results show an improvement of the quality of the films deposited on sapphire with increasing radio-frequency (RF) power with a preferentially growth along the c-axis. The ERDA analysis reveals the presence of H in the films and a homogeneous composition over the entire thickness. The photoluminescence of annealed samples evidences an improvement on the optical quality as identified by the well structured near band edge recombination. © 2009 Elsevier Ltd. All rights reserved.

Agostinho, M., V. Rosa, T. Aviles, R. Welter, and P. Braunstein. "Synthesis and characterization of Co and Ni complexes stabilized by keto- and acetamide-derived P,O-type phosphine ligands." Dalton T (2009): 814-822. AbstractWebsite

The coordination properties of the beta-keto phosphine ligands R(2)PCH(2)C(O)Ph (HL(1), R = i-Pr; HL(2), R = Ph), of the new acetamide-derived phosphine ligand (i-Pr)(2)PNHC(O) Me (HL(3)) and of Ph(2)PNHC(O) Me (HL(4)) have been examined towards Ni(II) complexes. Comparisons are made between systems in which the PCH(2) function of the ketophosphine has been replaced with an isoelectronic PNH group in amide-derived ligands, or the PCH functionality of phosphinoenolates with a PN group in phosphinoiminolate complexes. Furthermore, ligands HL(2) and HL(4) reacted with [(eta(5)-C(5)H(5))CoI(2)(CO)] to afford the phosphine mono-adducts [(eta(5)-C(5)H(5))CoI(2){Ph(2)PCH(2)C(O)Ph}] (1) and [(eta(5)-C(5)H(5))CoI(2){Ph(2)PNHC(O)Me}] (3), respectively, which upon reaction with excess NEt(3) yielded the phosphinoenolate complex [(eta(5)-C(5)H(5))CoI{Ph(2)PCH (center dot center dot center dot) under barC((center dot center dot center dot) under barO)Ph}] (2) and the phosphinoiminolate complex [(eta(5)-C(5)H(5))CoI{Ph(2)PN (center dot center dot center dot) under barC((center dot center dot center dot) under barO)Me}] (4), respectively. The complexes cis-[Ni{(i-Pr)(2)PN (center dot center dot center dot) under barC((center dot center dot center dot) under barO)Me}(2)] (6) and cis-[Ni{Ph(2)PN (center dot center dot center dot) under barC((center dot center dot center dot) under barO)Me}(2)] (7) were obtained similarly from NiCl(2) and HL(3) and HL(4), respectively, in the presence of a base. The phosphinoenolate complex [Ni{(i-Pr)(2)PCH (center dot center dot center dot) under barC((center dot center dot center dot) under barO) Ph}(2)] (5) exists in ethanol as a mixture of the cis and trans isomers, in contrast to cis-[Ni{(Ph(2)PCH (center dot center dot center dot) under barC((center dot center dot center dot) under barO)Ph}(2)], and the solid-state structure of the trans isomer of 5 was established by X-ray diffraction. The structures of the ligand HL3 and of the complexes 1, 3 in 3 center dot 3/2CH(2)Cl(2), 4, 6 and 7 have also been determined by X-ray diffraction and are compared with those of related complexes. Complexes 4, 6 and 7 contain a five-membered heteroatomic metallocyclic moiety, which is constituted by five different chemical elements. The structural consequences of the steric bulk of the P substituents and of the electronic characteristics of the P, O chelates are discussed.

Pais, Tiago C., and Paula Amaral. "A Tabu Search Based Approach For Exams Timetabling Problem." Livro de actas do 14º Congresso da Associação Portuguesa de Investigação Operacional, IO 2009, 7-9 September 2009. 2009. 155-162. Abstract
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Phillips, AJL, and A. Alves. "Taxonomy, phylogeny, and epitypification of Melanops tulasnei, the type species of Melanops." Fungal Diversity. 38 (2009): 155-166. Abstract
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Costa, P. M., H. M. Santos, I. Peres, M. H. Costa, S. Alves, J. L. Capelo-Martinez, and M. S. Diniz. "Toxicokinetics of waterborne trivalent arsenic in the freshwater bivalve corbicula fluminea." Archives of Environmental Contamination and Toxicology. 57 (2009): 338-347. AbstractWebsite
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Xavier, J., S. Avril, F. Pierron, and J. Morais. "Variation of transverse and shear stiffness properties of wood in a tree." Composites Part A: Applied Science and Manufacturing. 40 (2009): 1953-1960. Abstract
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Said, R., N. Ali, C. A. A. Ghumman, O. M. N. D. Teodoro, and W. Ahmed. "{Characterisation of DLC Films Deposited Using Titanium Isopropoxide (TIPOT) at Different Flow Rates}." Journal of nanoscience and nanotechnology. 9 (2009): 4298-4304. Abstract

In recent years, there has been growing interest in the search for advanced biomaterials for biomedical applications, such as human implants and surgical cutting tools. It is known that both carbon and titanium exhibit good biocompatibility and have been used as implants in the human body. It is highly desirable to deposit biocompatible thin films onto a range of components in order to impart biocompatibility and to minimise wear in implants. Diamond like carbon (DLC) is a good candidate material for achieving biocompatibility and low wear rates. In this study, thin films of diamond-like-carbon DLC were deposited onto stainless steel (316) substrates using C2H2, argon and titanium isopropoxide (TIPOT) precursors. Argon was used to generate the plasma in the plasma enhanced vapour deposition (PECVD) system. A critical coating feature governing the performance of the component during service is film thickness. The as-grown films were in the thickness range 90-100 nm and were found to be dependent on TIPOT flow rate. Atomic force microscopy (AFM) was used to characterise the surface roughness of the samples. As the flow rate of TIPOT increased the average roughness was found to increase in conjunction with the film thickness. Raman spectroscopy was used to investigate the chemical structure of amorphous carbon matrix. Surface tension values were calculated using contact angle measurements. In general, the trend of the surface tension results exhibited an opposite trend to that of the contact angle. The elemental composition of the samples was characterised using a VG ToF SIMS (IX23LS) instrument and X-ray photoelectron spectroscopy (XPS). Surprisingly, SIMS and XPS results showed that the DLC samples did not show evidence of titanium since no peaks representing to titanium appeared on the SIMS/XPS spectra.

Martí, A., E. Antolín, P. G. Linares, E. Cánovas, D. {Fuertes Marrón}, C. Tablero, M. Mendes, A. Mellor, I. Tobías, M. Y. Levy, E. Hernández, A. Luque, C. D. Farmer, C. R. Stanley, R. P. Campion, J. L. Hall, S. V. Novikov, C. T. Foxon, R. Scheer, B. Marsen, H. W. Schock, M. Picault, and C. Chaix. "{IBPOWER: Intermediate band materials and solar cells for photovoltaics with high efficiency and reduced cost}." Conference Record of the IEEE Photovoltaic Specialists Conference. 2009. Abstract
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Rivas, Maria G., Cristiano S. Mota, Sofia R. Pauleta, Marta S. P. Carepo, Filipe Folgosa, Susana L. A. Andrade, Guy Fauque, Alice S. Pereira, Pedro Tavares, Juan J. Calvete, Isabel Moura, and Jose J. G. Moura. "{Isolation and characterization of a new Cu-Fe protein from Desulfovibrio aminophilus DSM12254.}." Journal Of Inorganic Biochemistry. 103 (2009): 1314-1322. Abstract
The isolation and characterization of a new metalloprotein containing Cu and Fe atoms is reported. The as-isolated Cu-Fe protein shows an UV-visible spectrum with absorption bands at 320 nm, 409 nm and 615 nm. Molecular mass of the native protein along with denaturating electrophoresis and mass spectrometry data show that this protein is a multimer consisting of 14+/-1 subunits of 15254.3+/-7.6 Da. Mössbauer spectroscopy data of the as-isolated Cu-Fe protein is consistent with the presence of [2Fe-2S](2+) centers. Data interpretation of the dithionite reduced protein suggest that the metallic cluster could be constituted by two ferromagnetically coupled [2Fe-2S](+) spin delocalized pairs. The biochemical properties of the Cu-Fe protein are similar to the recently reported molybdenum resistance associated protein from Desulfovibrio, D. alaskensis. Furthermore, a BLAST search from the DNA deduced amino acid sequence shows that the Cu-Fe protein has homology with proteins annotated as zinc resistance associated proteins from Desulfovibrio, D. alaskensis, D. vulgaris Hildenborough, D. piger ATCC 29098. These facts suggest a possible role of the Cu-Fe protein in metal tolerance.
Ayouchi, R., L. Bentes, C. Casteleiro, O. Conde, C. P. Marques, E. Alves, A. M. C. Moutinho, H. P. Marques, O. Teodoro, and R. Schwarz. "{Photosensitivity of nanocrystalline ZnO films grown by PLD}." Applied Surface Science. 255 (2009): 5917-5921. Abstract

We have studied the properties of ZnO thin films grown by laser ablation of ZnO targets on (0 0 0 1) sapphire (Al2O3), under substrate temperatures around 400 8C. The films were characterized by different methods including X-ray photoelectron spectroscopy (XPS), X-ray diffraction (XRD) and atomic force microscopy (AFM). XPS analysis revealed that the films are oxygen deficient, and XRD analysis with u–2u scans and rocking curves indicate that the ZnO thin films are highly c-axis oriented. All the films are ultraviolet (UV) sensitive. Sensitivity is maximum for the films deposited at lower temperature. The films deposited at higher temperatures show crystallite sizes of typically 500 nm, a high dark current and minimum photoresponse. In all films we observe persistent photoconductivity decay. More densely packed crystallites and a faster decay in photocurrent is observed for films deposited at lower temperature.

Pei, Z. L., L. Pereira, G. Gonçalves, P. Barquinha, N. Franco, E. Alves, A. M. B. Rego, R. Martins, and E. Fortunato. "{Room-Temperature Cosputtered HfO[sub 2]–Al[sub 2]O[sub 3] Multicomponent Gate Dielectrics}." Electrochemical and Solid-State Letters. 12 (2009): G65. AbstractWebsite
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2008
Vitor Rosa, Teresa Aviles, Gabriel Aullon, Berta Covelo, and Carlos Lodeiro. "{A new bis(1-naphthylimino)acenaphthene compound and its Pd(II) and Zn(II) complexes: Synthesis, characterization, solid-state structures and density functional theory studies on the syn and anti isomers}." {INORGANIC CHEMISTRY}. {47} (2008): {7734-7744}. Abstract

{A new rigid bidentate ligand, bis(1-naphthylimino)acenaphthene, L1, and its Zn(II) and Pd(II) complexes {[}ZnCl(2)(L1)], 1, and {[}PdCl(2)(L1)], 2, were synthesized. L1 was prepared by the ``template method{''}, reacting 1-naphthyl amine and acenaphthenequinone in the presence of ZnCl(2), giving 1, which was further demetallated. Reaction of 1-naphthyl amine with acenaphthenequinone and PdCl(2) afforded dichloride bis(1-naphthyl)acenaphthenequinonediimine palladium, 2. L1, 1, and 2 were obtained as a mixture of syn and anti isomers. Compound 2 was also obtained by the reaction of PdCl(2) activated by refluxing it in acetonitrile followed by the addition of L1; by this route also a mixture of syn and anti isomers was obtained, but at a different rate. The solid-state structures of L1 and the anti isomer of compound 2 have been determined by single-crystal X-ray diffraction. All compounds have been characterized by elemental analyses; matrix-assisted laser desorption ionization-time-of-flight-mass spectrometry; IR; UV-vis; (1)H, (13)C, and (1)H-(1)H correlation spectroscopy; (1)H-(13)C heteronuclear single quantum coherence; (1)H-(13)C heteronuclear single quantum coherence-total correlation spectroscopy; and (1)H-(1)H nuclear Overhauser effect spectrometry NMR spectroscopies when applied. Density functional theory studies showed that both conformers for {[}PdCl(2)(BIAN)] are isoenergetic, and they can both be obtained experimentally. However, we can predict that the isomerization process is not available in a square-planar complex, but it is possible for the free ligand. The molecular geometry is very similar in both isomers, and only different orientations for naphthyl groups can be expected.}

JD, Botas, Velhinho A, and Silva RJC. "Elastic Behaviour of Spherical Particles Reinforced Metal-Matrix Composites." Advanced Materials Forum Iv. Ed. Baptista APM Sa Alves Malheiros LF Vieira C. F. M. Marques AT, Silva AF. Vol. 587-588. Materials Science Forum, 587-588. 2008. 202-206. Abstract

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