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F
Fratini, F., L. Safari, A. G. Hayrapetyan, K. Jankala, P. Amaro, and J. P. Santos. "Quantized form factor shift in the presence of free electron laser radiation." EPL (Europhysics Letters) 107 (2014): 13002. AbstractWebsite

In electron scattering, the target form factors contribute significantly to the diffraction pattern and carry information on the target electromagnetic charge distribution. Here we show that the presence of electromagnetic radiation, as intense as currently available in free electron lasers, shifts the dependence of the target form factors by a quantity that depends on the number of photons absorbed or emitted by the electron as well as on the parameters of the electromagnetic radiation. As example, we show the impact of intense ultraviolet and soft X-ray radiation on elastic electron scattering by the Ne-like argon ion and by the xenon atom. We find that the shift brought by the radiation to the form factor is of the order of some percent. Our results may open up a new avenue to explore matter with the assistance of laser.

Fratini, F., L. Safari, A. G. Hayrapetyan, K. Jankala, P. Amaro, and J. P. Santos. "Quantized form factor shift in the presence of free electron laser radiation." EPL (Europhysics Letters) 107 (2014): 13002. AbstractWebsite

In electron scattering, the target form factors contribute significantly to the diffraction pattern and carry information on the target electromagnetic charge distribution. Here we show that the presence of electromagnetic radiation, as intense as currently available in free electron lasers, shifts the dependence of the target form factors by a quantity that depends on the number of photons absorbed or emitted by the electron as well as on the parameters of the electromagnetic radiation. As example, we show the impact of intense ultraviolet and soft X-ray radiation on elastic electron scattering by the Ne-like argon ion and by the xenon atom. We find that the shift brought by the radiation to the form factor is of the order of some percent. Our results may open up a new avenue to explore matter with the assistance of laser.

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EPS. "Euphysics News." 44 (2013): 1-36. Abstract
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Ensina, Ana, Patr{\'ı}cia M. Carvalho, Jorge Machado, Maria Lu{\'ı}sa Carvalho, Diogo Casal, Diogo Pais, José Paulo Santos, António A. Dias, and Sofia Pessanha. "Analysis of human tissues using Energy Dispersive X Ray Fluorescence – Dark matrix determination for the application to cancer research." Journal of Trace Elements in Medicine and Biology 68 (2021): 126837. AbstractWebsite
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D
Dyke, J. M., G. Levita, A. Morris, J. S. Ogden, A. A. Dias, M. Algarra, J. P. Santos, M. L. Costa, P. Rodrigues, M. M. Andrade, and M. T. Barros. "Contrasting Behavior in Azide Pyrolyses: An Investigation of the Thermal Decompositions of Methyl Azidoformate, Ethyl Azidoformate and 2-Azido-N, N-dimethylacetamide by Ultraviolet Photoelectron Spectroscopy and Matrix Isolation Infrared Spectroscopy." Chemistry - A European Journal 11 (2005): 1665-1676. Abstract
The thermal decompositions of methyl azidoformate (N3COOMe), ethyl azidoformate (N3COOEt) and 2-azido-N,N-dimethylacetamide (N3CH2CONMe2) have been studied by matrix isolation infrared spectroscopy and real-time ultraviolet photoelectron spectroscopy. N2 appears as an initial pyrolysis product in all systems, and the principal interest lies in the fate of the accompanying organic fragment. For methyl azidoformate, four accompanying products were observed: HNCO, H2CO, CH2NH and CO2, and these are believed to arise as a result of two competing decomposition routes of a four-membered cyclic intermediate. Ethyl azidoformate pyrolysis yields four corresponding products: HNCO, MeCHO, MeCHNH and CO2, together with the five-membered-ring compound 2-oxazolidone. In contrast, the initial pyrolysis of 2-azido-N,N-dimethyl acetamide, yields the novel imine intermediate Me2NCOCHNH, which subsequently decomposes into dimethyl formamide (HCONMe2), CO, Me2NH and HCN. This intermediate was detected by matrix isolation IR spectroscopy, and its identity confirmed both by a molecular orbital calculation of its IR spectrum, and by the temperature dependence and distribution of products in the PES and IR studies. Mechanisms are proposed for the formation and decomposition of all the products observed in these three systems, based on the experimental evidence and the results of supporting molecular orbital calculations.
Dyke, J. M., G. Levita, A. Morris, J. S. Ogden, A. A. Dias, M. Algarra, J. P. Santos, M. L. Costa, P. Rodrigues, M. M. Andrade, and M. T. Barros. "Contrasting Behavior in Azide Pyrolyses: An Investigation of the Thermal Decompositions of Methyl Azidoformate, Ethyl Azidoformate and 2-Azido-N, N-dimethylacetamide by Ultraviolet Photoelectron Spectroscopy and Matrix Isolation Infrared Spectroscopy." Chemistry - A European Journal 11 (2005): 1665-1676. Abstract

The thermal decompositions of methyl azidoformate (N3COOMe), ethyl azidoformate (N3COOEt) and 2-azido-N,N-dimethylacetamide (N3CH2CONMe2) have been studied by matrix isolation infrared spectroscopy and real-time ultraviolet photoelectron spectroscopy. N2 appears as an initial pyrolysis product in all systems, and the principal interest lies in the fate of the accompanying organic fragment. For methyl azidoformate, four accompanying products were observed: HNCO, H2CO, CH2NH and CO2, and these are believed to arise as a result of two competing decomposition routes of a four-membered cyclic intermediate. Ethyl azidoformate pyrolysis yields four corresponding products: HNCO, MeCHO, MeCHNH and CO2, together with the five-membered-ring compound 2-oxazolidone. In contrast, the initial pyrolysis of 2-azido-N,N-dimethyl acetamide, yields the novel imine intermediate Me2NCOCHNH, which subsequently decomposes into dimethyl formamide (HCONMe2), CO, Me2NH and HCN. This intermediate was detected by matrix isolation IR spectroscopy, and its identity confirmed both by a molecular orbital calculation of its IR spectrum, and by the temperature dependence and distribution of products in the PES and IR studies. Mechanisms are proposed for the formation and decomposition of all the products observed in these three systems, based on the experimental evidence and the results of supporting molecular orbital calculations.

Dyke, J. M., G. Levita, A. Morris, J. S. Ogden, A. A. Dias, M. Algarra, J. P. Santos, M. L. Costa, P. Rodrigues, and M. T. Barros. "A Study of the Thermal Decomposition of 2-Azidoacetamide by Ultraviolet Photoelectron Spectroscopy and Matrix-Isolation Infrared Spectroscopy:  Identification of the Imine Intermediate H2NCOCHNH." The Journal of Physical Chemistry A 108 (2004): 5299-5307. AbstractWebsite

The thermal decomposition of 2-azidoacetamide (N3CH2CONH2) has been studied by matrix-isolation infrared spectroscopy and real-time ultraviolet photoelectron spectroscopy. N2, CH2NH, HNCO, CO, NH3, and HCN are observed as high-temperature decomposition products, while at lower temperatures, the novel imine intermediate H2NCOCHNH is observed in the matrix-isolation IR experiments. The identity of this intermediate is confirmed both by ab initio molecular orbital calculations of its IR spectrum and by the temperature dependence and distribution of products in the photoelectron spectroscopy (PES) and IR studies. Mechanisms are proposed for the formation and decomposition of the intermediate consistent both with the observed results and with estimated activation energies based on pathway calculations.

Diepold, Marc, Luis M. P. Fernandes, Jorge Machado, Pedro Amaro, Marwan Abdou-Ahmed, Fernando D. Amaro, Aldo Antognini, François Biraben, Tzu-Ling Chen, Daniel S. Covita, Andreas J. Dax, Beatrice Franke, Sandrine Galtier, Andrea L. Gouvea, Johannes Götzfried, Thomas Graf, Theodor W. Hänsch, Malte Hildebrandt, Paul Indelicato, Lucile Julien, Klaus Kirch, Andreas Knecht, Franz Kottmann, Julian J. Krauth, Yi-Wei Liu, Cristina M. B. Monteiro, Françoise Mulhauser, Boris Naar, Tobias Nebel, François Nez, Jose Paulo Santos, Joaquim M. F. dos Santos, Karsten Schuhmann, Csilla I. Szabo, David Taqqu, João F. C. A. Veloso, Andreas Voss, Birgit Weichelt, and Randolf Pohl. "Improved x-ray detection and particle identification with avalanche photodiodes." Review of Scientific Instruments 86 (2015): 053102-7. AbstractWebsite
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Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of Kα hypersatellite line energies and transition probabilities for selected atoms with 12 ≤ Z ≤ 80." Journal of Physics B: Atomic, Molecular and Optical Physics 40 (2007): 57. AbstractWebsite

The transition probabilities of K&alpha; hypersatellite lines and energy shifts with respect to the corresponding diagram lines are computed using the Dirac&ndash;Fock model for several values of atomic number <I>Z</I> throughout the periodic table. The influence of the Breit interaction on the K&alpha;<SUB>1</SUB><SUP>h</SUP>/K&alpha;<SUB>2</SUB><SUP>h</SUP> line intensity ratio, K&alpha;<SUB>1</SUB><SUP>h</SUP> and K&alpha;<SUB>2</SUB><SUP>h</SUP> line energy shifts and K&alpha;<SUB>1</SUB><SUP>h</SUP> to K&alpha;<SUB>2</SUB><SUP>h</SUP> line energy splitting is evaluated. Double-K shell hole threshold values for selected elements with 23 &les;<I>Z</I>&les; 30, calculated within the same approach, are compared with available experimental results.

Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Dirac-Fock Transition Energies and Radiative and Radiationless Transition Probabilities for Ar8+ to Ar16+ Ion Levels with K-Shell Hole." Atomic Data and Nuclear Data Tables 79 (2001): 223-239. Abstract
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Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of Kβ hypersatellite energies and transition probabilities for selected atoms with 13<=Z<=80." Journal of Physics B: Atomic and Molecular Physics 39 (2006): 2355-2366. AbstractWebsite
Energies and transition probabilities of Kβ hypersatellite lines are computed using the Dirac–Fock model for several values of Z throughout the periodic table. The influence of the Breit interaction on the energy shifts from the corresponding diagram lines and on the Kβh1/Kβh3 intensity ratio is evaluated. The widths of the double-K hole levels are calculated for Al and Sc. The results are compared to experiment and to other theoretical calculations.
Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of Kα hypersatellite line energies and transition probabilities for selected atoms with 12<=Z<=80." Journal of Physics B: Atomic, Molecular and Optical Physics 40 (2007): 57. AbstractWebsite
The transition probabilities of Kα hypersatellite lines and energy shifts with respect to the corresponding diagram lines are computed using the Dirac–Fock model for several values of atomic number Z throughout the periodic table. The influence of the Breit interaction on the Kα1h/Kα2h line intensity ratio, Kα1h and Kα2h line energy shifts and Kα1h to Kα2h line energy splitting is evaluated. Double-K shell hole threshold values for selected elements with 23 ⩽Z⩽ 30, calculated within the same approach, are compared with available experimental results.
Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of Kβ hypersatellite energies and transition probabilities for selected atoms with 13 ≤ Z ≤ 80." Journal of Physics B: Atomic and Molecular Physics 39 (2006): 2355-2366. AbstractWebsite

Energies and transition probabilities of Kβ hypersatellite lines are computed using the Dirac–Fock model for several values of Z throughout the periodic table. The influence of the Breit interaction on the energy shifts from the corresponding diagram lines and on the Kβh1/Kβh3 intensity ratio is evaluated. The widths of the double-K hole levels are calculated for Al and Sc. The results are compared to experiment and to other theoretical calculations.Al_Sc_Mg_Ti

Carvalho, Patr{\'ı}cia M. S., Sofia Pessanha, Jorge Machado, Ana Lu{\'ı}sa Silva, João Veloso, Diogo Casal, Diogo Pais, and José Paulo Santos. "Energy dispersive X-ray fluorescence quantitative analysis of biological samples with the external standard method." Spectrochimica Acta Part B: Atomic Spectroscopy 174 (2020): 105991. AbstractWebsite
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da Carvalho, {Patrícia Miguel Silva}, Fábio Leite, {A. L. M. } Silva, Sofia Pessanha, {Maria Luísa} Carvalho, {João F. C. A. } Veloso, and {José Paulo} Santos. "Elemental mapping of Portuguese ceramic pieces with a full-field XRF scanner based on a 2D-THCOBRA detector." European Physical Journal Plus 136 (2021). Abstract

In this work, we present a novel application of the full-field energy-dispersive X-ray fluorescence (EDXRF) imaging system based on a MicroPattern Gaseous Detector (2D-THCOBRA) in the cultural heritage field. The detector has an intrinsic imaging capability with spatial resolution of 400μmFWHM, and is energy sensitive, presenting an energy resolution of approximately 1keVFWHM at 5.9keV. The full-field XRF scanner based on the 2D-THCOBRA detector allows mapping the distribution of elements in large area samples with high detection efficiency (75 % at 5.9keV), being a very promising choice for elemental mapping analysis of large area cultural heritage samples. In this work, we have demonstrated the imaging capabilities of the full-field XRF scanner and used it to assess the restoration of a Portuguese faience piece.

Cardoso, Pedro, Pedro Amaro, Jose Paulo Santos, Joaquim T. de Assis, and Maria Luisa Carvalho. "Determination of Nickel and Manganese Contaminants in Pharmaceutical Iron Supplements Using Energy Dispersive X-ray Fluorescence." Applied Spectroscopy 71 (2017): 432-437. AbstractWebsite
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Cardoso, Pedro, Pedro Amaro, Jose Paulo Santos, Joaquim T. de Assis, and Maria Luisa Carvalho. "Determination of Nickel and Manganese Contaminants in Pharmaceutical Iron Supplements using Energy Dispersive X-ray Fluorescence." Applied Spectroscopy (2016). AbstractWebsite

In this study, we investigate the capability of energy dispersive X-ray fluorescence (EDXF) spectrometry in a triaxial geometry apparatus as a fast and nondestructive determination method of both dominant and contaminant elements in pharmaceutical iron supplements. The following iron supplements brands with their respective active ingredients were analyzed: Neutrofer fólico (iron gylcinate), Anemifer (iron(II) sulfate monohydrate), Noripurum (iron(III)-hydroxide polymaltose complex), Sulferbel (iron(II) sulfate monohydrate), and Combiron Fólico (carbonyl iron). Although we observe a good agreement between the iron content obtained by the present method and that indicated in the supplement's prescribed dose, we observe contamination by manganese and nickel of up to 180 μg and 36 μg, respectively. These contents correspond to 7.2% and 14.4% of the permitted daily exposure of manganese and nickel, respectively, for an average adult individual as determined by the European Medicine Agency (EMEA). The method was successfully validated against the concentrations of several certified reference materials of biological light matrices with similar concentrations of contaminants. Moreover, we also validated our method by comparing the concentrations with those obtained with the inductively coupled plasma-atomic emission technique.

Cardoso, P., T. C. Mateus, G. Velu, R. P. Singh, J. P. Santos, M. L. Carvalho, V. M. Louren{\c c}o, F. Lidon, F. Reboredo, and M. Guerra. "Localization and distribution of Zn and Fe in grains of biofortified bread wheat lines through micro- and triaxial-X-ray fluorescence spectrometry." Spectrochim. Acta Part B 141 (2018): 70-79. Abstract

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Benis, E. P., S. Doukas, T. J. M. Zouros, P. Indelicato, F. Parente, C. Martins, J. P. Santos, and J. P. Marques. "Evaluation of the effective solid angle of a hemispherical deflector analyser with injection lens for metastable Auger projectile states." Nuclear Inst. and Methods in Physics Research, B 365 (2015): 457-461. AbstractWebsite

Nuclear Inst. and Methods in Physics Research, B, 365 (2015) 457-461. doi:10.1016/j.nimb.2015.07.006

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Amaro, Pedro, Filippo Fratini, Laleh Safari, Aldo Antognini, Paul Indelicato, Randolf Pohl, and Jose Paulo Santos. "Quantum interference shifts in laser spectroscopy with elliptical polarization." Physical Review A 92 (2015): 062506-5. AbstractWebsite
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Amaro, Pedro, Beatrice Franke, Julian J. Krauth, Marc Diepold, Filippo Fratini, Laleh Safari, Jorge Machado, Aldo Antognini, Franz Kottmann, Paul Indelicato, Randolf Pohl, and Jose Paulo Santos. "Quantum interference effects in laser spectroscopy of muonic hydrogen, deuterium, and helium-3." Physical Review A 92 (2015): 022514-7. AbstractWebsite
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Amaro, Pedro, Filippo Fratini, Laleh Safari, Jorge Machado, Mauro Guerra, Paul Indelicato, and Jose Paulo Santos. "Relativistic evaluation of the two-photon decay of the metastable 1s22s2p 3P0 state in berylliumlike ions with an effective-potential model." Physical Review A 93 (2016): 032502-8. AbstractWebsite

The two-photon $1{s}^{2}2s2p\phantom{\rule{0.16em}{0ex}}{}^{3}{P}_{0}\ensuremath{\rightarrow}1{s}^{2}{s}^{2}\phantom{\rule{0.16em}{0ex}}{}^{1}{S}_{0}$ transition in berylliumlike ions is investigated theoretically within a fully relativistic framework and a second-order perturbation theory. We focus our analysis on how electron correlation, as well as the negative-energy spectrum, can affect the forbidden $E1M1$ decay rate. For this purpose, we include the electronic correlation via an effective local potential and within a single-configuration-state model. Due to its experimental interest, evaluations of decay rates are performed for berylliumlike xenon and uranium. We find that the negative-energy contribution can be neglected at the present level of accuracy in the evaluation of the decay rate. On the other hand, if contributions of electronic correlation are not carefully taken into account, it may change the lifetime of the metastable state by up to 20%. By performing a fully relativistic $jj$-coupling calculation, we find a decrease of the decay rate by two orders of magnitude compared to nonrelativistic $LS$-coupling calculations, for the selected heavy ions.

Amaro, Pedro, Sophie Schlesser, Mauro Guerra, Eric-Olivier Le Bigot, Jean-Michel Isac, Pascal Travers, Jose Paulo Santos, Csilla Szabo, Alexandre Gumberidze, and Paul Indelicato. "Absolute Measurement of the Relativistic Magnetic Dipole Transition Energy in Heliumlike Argon." Phys. Rev. Lett. 109 (2012): 043005. AbstractWebsite

The 1s2s 3S1 ! 1s2 1S0 relativistic magnetic dipole transition in heliumlike argon, emitted by the plasma of an electron-cyclotron resonance ion source, has been measured using a double-flat crystal x-ray spectrometer. Such a spectrometer, used for the first time on a highly charged ion transition, provides absolute (reference-free) measurements in the x-ray domain. We find a transition energy of 3104.1605(77) eV (2.5 ppm accuracy). This value is the most accurate, reference-free measurement done for such a transition and is in good agreement with recent QED predictions.

Amaro, P., C. I. Szabo, S. Schlesser, A. Gumberidze, E. G. Kessler, A. Henins, E. O. Le Bigot, M. Trassinelli, J. M. Isac, P. Travers, M. Guerra, J. P. Santos, and P. Indelicato. "A vacuum double-crystal spectrometer for reference-free X-ray spectroscopy of highly charged ions." Radiation Physics and Chemistry 98 (2014): 132-149. AbstractWebsite

Radiation Physics and Chemistry, 98 + (2014) 132-149. doi:10.1016/j.radphyschem.2014.01.015

Amaro, P., and Csilla I. Szabo. A vacuum double-crystal spectrometer for reference-free highly charged ions X-ray spectroscopy. Submitted to Radiation Physics and Chemistry, Radiat. Phys. Chem. ed., 2012. Abstract
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