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JM, Costa, Marques Silva da J, Pinheiro C, Barón M, Mylona P, Centritto M, Haworth M, and Turkan Oliveira MM. I. Loreto F, Uzilday B. "Opportunities and limitations of crop phenotyping in Southern European countries." Frontiers in Plant Science 10.3389/fpls.2019.01125 (2019): 1125.
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Alves, M., P. Chicau, H. Matias, J. Passarinho, C. Pinheiro, and C. P. Ricardo. "Metabolic analysis revealed altered amino acid profiles in Lupinus albus organs as a result of boron deficiency." Physiologia Plantarum. 142 (2011): 224-232. AbstractWebsite

We analysed the changes in the metabolites of Lupinus albus organs (leaf-blades, petioles, apexes, hypocotyls and roots) as a consequence of B deficiency. The deficiency did not affect malate concentration and induced only minor changes in the sugar content, suggesting that the carbohydrate metabolism is little affected by the deficiency. Contrarily, marked changes in the content of free amino acids were observed, with some specific variations associated with the different organs. These changes indicate that various aspects of metabolism implicated in the amino acid accumulation were affected by B deficiency. Most of the detected changes appear to have implications with some stress responses or signalling processes. Asparagine and proline that increase in many stresses also accumulated in petioles, apexes and hypocotyls. Accumulation of gamma-aminobutyric acid shunt amino acids, indicative of production of reactive oxygen species, occurs in the same three organs and also the roots. The increase in the branched-chain amino acids, observed in all organs, suggests the involvement of B with the cytoskeleton, whereas glycine decrease in leaf-blades and active growing organs (apexes and roots) could be associated with the proposed role of this amino acids in plant signalling in processes that might be associated with the decreased growth rates observed in B deficiency. Despite the admitted importance of free amino acids in plant metabolism, the available information on this matter is scarce. So our results bring new information concerning the effects of B deficiency in the metabolism of the several L. albus organs.

Alves, M., P. Chicau, H. Matias, J. Passarinho, C. Pinheiro, and C. P. Ricardo. "Metabolic analysis revealed altered amino acid profiles in Lupinus albus organs as a result of boron deficiency." Physiologia Plantarum. 142 (2011): 224-232. AbstractWebsite
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Fonseca, Catia, Sebastien Planchon, Carla Pinheiro, Jenny Renaut, Candido Pinto Ricardo, Margarida M. Oliveira, and Rita Batista. "Maize IgE binding proteins: each plant a different profile?" Proteome science. 12 (2014): 17. AbstractWebsite
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Fonseca, Catia, Sebastien Planchon, Carla Pinheiro, Jenny Renaut, Candido Pinto Ricardo, M. Margarida Oliveira, and Rita Batista. "Maize IgE binding proteins: each plant a different profile?" Proteome Science. 12 (2014). AbstractWebsite
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Regalado, AP, C. Pinheiro, S. Vidal, I. Chaves, CPP Ricardo, and C. Rodrigues-Pousada. "The Lupinus albus class-III chitinase gene, IF3, is constitutively expressed in vegetative organs and developing seeds." Planta. 210 (2000): 543-550. Abstract
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Regalado, AP, C. Pinheiro, S. Vidal, I. Chaves, CPP Ricardo, and C. Rodrigues-Pousada. "The Lupinus albus class-III chitinase gene, IF3, is constitutively expressed in vegetative organs and developing seeds." Planta. 210 (2000): 543-550. Abstract
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Pinheiro, Carla, Carla Antonio, Maria Fernanda Ortuno, Petre I. Dobrev, Wolfram Hartung, Jane Thomas-Oates, Candido Pinto Ricardo, Radomira Vankova, Manuela M. Chaves, and Julie C. Wilson. "Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses." Journal of Experimental Botany. 62 (2011): 4965-4974. AbstractWebsite

The early (2-4 d) effects of slowly imposed soil water deficit on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance in different organs (leaf blade, stem stele, stem cortex, and root) were evaluated on 23-d-old plants (growth chamber assay). Our work shows that several metabolic adjustments occurred prior to alteration of the plant water status, implying that water deficit is perceived before the change in plant water status. The slow, progressive decline in soil water content started to be visible 3 d after withholding water (3 DAW). The earliest plant changes were associated with organ-specific metabolic responses (particularly in the leaves) and with leaf conductance and only later with plant water status and photosynthetic rate (4 DAW) or photosynthetic capacity (according to the Farquhar model; 6 DAW). Principal component analysis (PCA) of the physiological parameters, the carbohydrate and the hormone levels and their relative values, as well as leaf water-soluble metabolites full scan data (LC-MS/MS), showed separation of the different sampling dates. At 6 DAW classically described stress responses are observed, with plant water status, ABA level, and root hormonal balance contributing to the separation of these samples. Discrimination of earlier stress stages (3 and 4 DAW) is only achieved when the relative levels of indole-3-acetic acid (IAA), cytokinins (Cks), and carbon metabolism (glucose, sucrose, raffinose, and starch levels) are taken into account. Our working hypothesis is that, in addition to single responses (e.g. ABA increase), the combined alterations in hormone and carbohydrate levels play an important role in the stress response mechanism. Response to more advanced stress appears to be associated with a combination of cumulative changes, occurring in several plant organs. The carbohydrate and hormonal balance in the leaf (IAA to bioactive-Cks; soluble sugars to IAA and starch to IAA; relative abundances of the different soluble sugars) flag the initial responses to the slight decrease in soil water availability (10-15% decrease). Further alterations in sucrose to ABA and in raffinose to ABA relative values (in all organs) indicate that soil water availability continues to decrease. Such alterations when associated with changes in the root hormone balance indicate that the stress response is initiated. It is concluded that metabolic balance (e.g. IAA/bioactive Cks, carbohydrates/IAA, sucrose/ABA, raffinose/ABA, ABA/IAA) is relevant in triggering adjustment mechanisms.

Pinheiro, Carla, Carla Antonio, Maria Fernanda Ortuno, Petre I. Dobrev, Wolfram Hartung, Jane Thomas-Oates, Candido Pinto Ricardo, Radomira Vankova, Manuela M. Chaves, and Julie C. Wilson. "Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses." Journal of Experimental Botany. 62 (2011): 4965-4974. AbstractWebsite
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Zarrouk, Olfa, Rita Francisco, Marta Pinto-Marijuan, Ricard Brossa, Raquen Raissa Santos, Carla Pinheiro, Joaquim Miguel Costa, Carlos Lopes, and Maria Manuela Chaves. "Impact of irrigation regime on berry development and flavonoids composition in Aragonez (Syn. Tempranillo) grapevine." Agricultural Water Management. 114 (2012). AbstractWebsite
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Zarrouk, Olfa, Rita Francisco, Marta Pinto-Marijuan, Ricard Brossa, Raquen Raissa Santos, Carla Pinheiro, Joaquim Miguel Costa, Carlos Lopes, and Maria Manuela Chaves. "Impact of irrigation regime on berry development and flavonoids composition in Aragonez (Syn. Tempranillo) grapevine." Agricultural Water Management. 114 (2012). AbstractWebsite
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Ribeiro, IC, C. C. Leclercq, N. Simoes, A. Toureiro, I. Duarte, J. B. Freire, M. M. Chaves, J. Renaut, and C. Pinheiro. "Identification of chickpea seed proteins resistant to simulated in vitro human digestion." Journal of Proteomics. 169 (2017): 143-152. AbstractWebsite
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Chaves, M. M., JS Pereira, J. Maroco, ML Rodrigues, CPP Ricardo, ML Osorio, I. Carvalho, T. Faria, and C. Pinheiro. "How plants cope with water stress in the field. Photosynthesis and growth." Annals of Botany. 89 (2002): 907-916. Abstract
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Chaves, M. M., JS Pereira, J. Maroco, ML Rodrigues, CPP Ricardo, ML Osorio, I. Carvalho, T. Faria, and C. Pinheiro. "How plants cope with water stress in the field. Photosynthesis and growth." Annals of Botany. 89 (2002): 907-916. Abstract
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Jardak-Jamoussi, Rahma, Donia Abdelwahed, Nejia Zoghlami, Asma Ben Salem, Olfa Zarrouk, Ahmed Mliki, Manuela Chaves, Abdelwahed Ghorbel, and Carla Pinheiro. "Grapevine RD22a constitutive expression in tobacco enhances stomatal adjustment and confers drought tolerance." Theoretical and Experimental Plant Physiology. 28 (2016): 395-413. AbstractWebsite
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Zarrouk, Olfa, Cecilia Brunetti, Ricardo Egipto, Carla Pinheiro, Tania Genebra, Antonella Gori, Carlos M. Lopes, Massimiliano Tattini, and M. Manuela Chaves. "Grape Ripening Is Regulated by Deficit Irrigation/Elevated Temperatures According to Cluster Position in the Canopy." Frontiers in Plant Science. 7 (2016). AbstractWebsite
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Felisberto-Rodrigues, C., IC Ribeiro, M. Veloso, C. P. Ricardo, and C. Pinheiro. "Germination under aseptic conditions of different ecotypes of wild beet (Beta vulgaris L. ssp maritima)." Seed Science and Technology. 38 (2010): 517-521. Abstract
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Felisberto-Rodrigues, C., IC Ribeiro, M. Veloso, C. P. Ricardo, and C. Pinheiro. "Germination under aseptic conditions of different ecotypes of wild beet (Beta vulgaris L. ssp maritima)." Seed Science and Technology. 38 (2010): 517-521. Abstract
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Ribeiro, IC, C. Pinheiro, C. M. Ribeiro, M. M. Veloso, M. C. Simoes-Costa, I. Evaristo, O. S. Paulo, and C. P. Ricardo. "Genetic Diversity and Physiological Performance of Portuguese Wild Beet (Beta vulgaris spp. maritima) from Three Contrasting Habitats." Frontiers in Plant Science. 7 (2016). AbstractWebsite
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Zarrouk O., Pinheiro C., Misra Fernández Chaves C. S. V. M. "Fleshy fruit epidermis is a protective barrier under water stress." Water Scarcity and Sustainable Agriculture in Semiarid Environment: Tools, Strategies, and Challenges for Woody Crops. Ed. García-Tejero Durán I. & V. Zuazo. 2018. 507-533.
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Pinheiro, C., J. Kehr, and C. P. Ricardo. "Effect of water stress on lupin stem protein analysed by two-dimensional gel electrophoresis." Planta. 221 (2005): 716-728. AbstractWebsite
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Pinheiro, C., J. Kehr, and C. P. Ricardo. "Effect of water stress on lupin stem protein analysed by two-dimensional gel electrophoresis." Planta. 221 (2005): 716-728. AbstractWebsite
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Guerra-Guimaraes, Leonor, Ana Vieira, Ines Chaves, Carla Pinheiro, Vagner Queiroz, Jenny Renaut, and Candido P. Ricardo. "Effect of greenhouse conditions on the leaf apoplastic proteome of Coffea arabica plants." Journal of proteomics. 104 (2014): 128-39. AbstractWebsite
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Guerra-Guimaraes, Leonor, Ana Vieira, Ines Chaves, Carla Pinheiro, Vagner Queiroz, Jenny Renaut, and Candido P. Ricardo. "Effect of greenhouse conditions on the leaf apoplastic proteome of Coffea arabica plants." Journal of proteomics. 104 (2014): 128-39. AbstractWebsite
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Pinheiro, C., J. A. Passarinho, and C. P. Ricardo. "Effect of drought and rewatering on the metabolism of Lupinus albus organs." Journal of Plant Physiology. 161 (2004): 1203-1210. AbstractWebsite
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