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Vitoriano B., Carvalho L. C., Esteves Marques Manuel M. S. M. B. *. "A Simple Route Toward New Clomiphene Metabolites." Synlett. 5 (2010): 753-756.
Marques M. M. B., Pichlmair S., Martin Mulzer H. J. J. "Stereocontrolled synthesis of C-arylglycosides applied to the south west fragment of the antibiotic kendomycin." Synthesis. 18 (2002): 2766-2770.
Enugala R., Carvalho L. C., Pires Marques Manuel M. J. D. M. B. "Stereoselective glycosylation of glucosamine: the role of the N-protecting group." Chem. Asian J. . 7.- (2012): 2482-250.
Cardoso A. S., Marques M. M. B., Srinivasan Prabhakar Lobo Rzepa N. S. A. M. "Studies in sigmatropic rearrangements of N-prenylindole derivatives - a formal enantiomerically pure synthesis of tryprostatin B." Org. Biomol. Chem. . 4 (2006): 3966-3972.
Marques, Sofia Santos; Artur Silva; Manuel A. M. S. M. B. "Sustainable Amidation Reactions – Recent Advances." Eur J. Org. Chem. (2020). Abstract

Herein, we present a selection of sustainable amidation processes, that have contributed to solving the problems associated with traditional methods. Novel reagents and methods are described, including boron‐based reagents, the use of metallic and organometallic catalysts as well as metal‐free methods using milder and versatile oxidants.

Rocha A., Marques M. Manuel B.*. "Synthesis and characterization of novel indole-containing half-crowns as new emissive metal probes." Tetrahedron Lett.. 64 (2009): 7759-7770.
Enugala R., Marques M. M. B. *. "Synthesis of a 3-hydroxyl- free N-acetyl glucosamine disaccharide." Arkivoc. vi (2012): 90-100.
Green M. P., Pichlmair S., Marques Martin Mulzer M. M. B. H. J. "Synthesis of analogue structures of the p-quinone methide moiety of kendomycin." Org. Lett. . 6 (2004): 3131-3134.
Pires M. J. D., Poeira D. L., Purificação Marques S. I. M. M. B. "Synthesis of Substituted 4 ‑ , 5 ‑ , 6 ‑ , and 7 ‑ Azaindoles from Aminopyridines via a Cascade C − N Cross-Coupling/Heck Reaction." Org. Lett.. 18.- (2016): 3250−3253.
Cardoso A. S., Marques M. M. B., Srinivasan Prabhakar Lobo N. S. A. M. "A synthetic strategy using Witkop's pyrroloindole for (-)-debromoflustramine B, (+)-ent-debromoflustramine B and (+)-ent-debromoflustramide B ." Tetrahedron. 63 (2007): 10211-10225.
Janosik, T.; Bergman, Romero Stensland Stalhandske Marques Santos Lobo Prabha J.; I.;. "Synthetic, spectroscopic, and X-ray crystallographic studies of [1,2,7,8]tetrathiacyclododecino[4,3-b : 5,6-b': 10,9-b": 11,12-b''']tetraindoles." Eur. J. Org. Chem.. 8 (2002): 1392-1396.