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D
Delgado, Manuel, and Vítor H. Fernandes. "Rees quotients of numerical semigroups." Portugaliae Mathematica. 70.2 (2013): 93-112. AbstractWebsite

We introduce a class of finite semigroups obtained by considering Rees
quotients of numerical semigroups.
Several natural questions concerning this class, as well as particular
subclasses obtained by considering some special ideals, are answered while
others remain open. We exhibit nice presentations for these semigroups and
prove that the Rees quotients by ideals of N, the positive integers under
addition, constitute a set of generators for the pseudovariety of commutative
and nilpotent semigroups.

Delgado, Manuel, and Vítor H. Fernandes. "Solvable monoids with commuting idempotents." Int. J. Algebra Comput.. 15 (2005): 547-570. Abstract

The notion of the Abelian kernel of a finite monoid is a generalization of that of the derived subgroup of a finite group. A monoid $M$ is then called solvable if its chain of Abelian kernels terminates with the submonoid of $M$ generated by its idempotents. The main result of this paper is that the finite idempotent commuting monoids bearing this property are precisely those whose subgroups are solvable. In particular any finite aperiodic monoid is Abelian-solvable in this sense. A generalization of the main result of this paper has been published [in Int. J. Algebra Comput. 14, No. 5-6, 655-665 (2004; Zbl 1081.20067)] by the authors and ıt S. Margolis and ıt B. Steinberg.

Delgado, Manuel, V{\'ı}tor H. Fernandes, Stuart Margolis, and Benjamin Steinberg. "On semigroups whose idempotent-generated subsemigroup is aperiodic." Internat. J. Algebra Comput.. 14 (2004): 655-665.Website
Delgado, Manuel, and Vítor H. Fernandes. "Abelian kernels of some monoids of injective partial transformations and an application." Semigroup Forum. 61 (2000): 435-452.Website
C
Cordeiro, E., M. Delgado, and V. H. Fernandes. "Relative abelian kernels of some classes of transformation monoids." Bull. Austral. Math. Soc.. 73 (2006): 375-404.Website
Cicalò, Serena, Vítor H. Fernandes, and Csaba Schneider. "Partial transformation monoids preserving a uniform partition." Semigroup Forum (DOI 10.1007/s00233-014-9629-5). 90.2 (2015): 532-544. AbstractWebsite

The objective of this paper is to study the monoid of all partial
transformations of a finite set that preserve a uniform partition. In addition
to proving that this monoid is a quotient of a wreath product with respect to a
congruence relation, we show that it is generated by 5 generators, we compute
its order and determine a presentation on a minimal generating set.

Caneco, Rita, Vítor H. Fernandes, and Teresa M. Quinteiro. "Ranks and presentations of some normally ordered inverse semigroups." Periodica Mathematica Hungarica (DOI 10.1007/s10998-022-00448-8). 85 (2022): 435-447. AbstractWebsite

In this paper we compute the rank and exhibit a presentation for the monoids
of all $P$-stable and $P$-order preserving partial permutations on a finite set
$\Omega$, with $P$ an ordered uniform partition of $\Omega$. These (inverse)
semigroups constitute a natural class of generators of the pseudovariety of
inverse semigroups ${\sf NO}$ of all normally ordered (finite) inverse
semigroups.

A
Araújo, João, Vítor H. Fernandes, Manuel M. Jesus, Victor Maltcev, and James D. Mitchell. "Automorphisms of partial endomorphism semigroups." Publicationes Mathematicae Debrecen. 79.1-2 (2011): 23-39.
Araújo, Isabel M., Mário J. J. Branco, Vitor H. Fernandes, Gracinda M. S. Gomes, and N. Ruškuc. "On generators and relations for unions of semigroups." Semigroup Forum. 63 (2001): 49-62.
André, J. M., V. H. Fernandes, and J. D. Mitchell. "Largest 2-generated subsemigroups of the symmetric inverse semigroup." Proc. Edinb. Math. Soc. (2). 50 (2007): 551-561.Website