Publications

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Journal Article
von Stosch, Moritz, Rui Oliveira, Joana Peres, and Sebastiao Feyo de Azevedo. "{A general hybrid semi-parametric process control framework}." {JOURNAL OF PROCESS CONTROL}. {22} (Submitted): {1171-1181}. Abstract
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von Stosch, M., R. Oliveira, J. Peres, and Feyo S. de Azevedo. "{A hybrid semi-parametric approach to dynamical modelling of biological systems based on delayed differential equations}." {NEW BIOTECHNOLOGY}. {25} (Submitted): {S350}. Abstract
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von Stosch, M., R. Oliveira, J. Peres, and Feyo S. de Azevedo. "{A novel identification method for hybrid (N)PLS dynamical systems with application to bioprocesses}." {EXPERT SYSTEMS WITH APPLICATIONS}. {38} (Submitted): {10862-10874}. Abstract
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Oliveira, R., J. J. Clemente, A. E. Cunha, and M. J. T. Carrondo. "{Adaptive dissolved oxygen control through the glycerol feeding in a recombinant Pichia pastoris cultivation in conditions of oxygen transfer limitation}." {JOURNAL OF BIOTECHNOLOGY}. {116} (Submitted): {35-50}. Abstract
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Teixeira, A. P., R. Oliveira, P. M. Alves, and M. J. T. Carrondo. "{Advances in on-line monitoring and control of mammalian cell cultures: Supporting the PAT initiative}." {BIOTECHNOLOGY ADVANCES}. {27} (Submitted): {726-732}. Abstract
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Isidro, Ines A., Ana R. Ferreira, Joao J. Clemente, Antonio E. Cunha, and Rui Oliveira. "{Analysis of culture media screening data by projection to latent pathways: The case of Pichia pastoris X-33}." {JOURNAL OF BIOTECHNOLOGY}. {217} (Submitted): {82-89}. Abstract
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Ataide, F., F. Freitas, M. A. Miranda Reis, and R. Oliveira. "{Analysis of oxygen transport enhancement by functionalized magnetic nanoparticles (FMP) in biopolymer production processes}." {NEW BIOTECHNOLOGY}. {25} (Submitted): {S203}. Abstract
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Santos, J. L. C., A. M. Hidalgo, R. Oliveira, S. Velizarov, and J. G. Crespo. "{Analysis of solvent flux through nanofiltration membranes by mechanistic, chemometric and hybrid modelling}." {JOURNAL OF MEMBRANE SCIENCE}. {300} (Submitted): {191-204}. Abstract
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Ferreira, A. R., F. Ataide, M. von Stosch, J. M. L. Dias, J. J. Clemente, A. E. Cunha, and R. Oliveira. "{Application of adaptive DO-stat feeding control to Pichia pastoris X33 cultures expressing a single chain antibody fragment (scFv)}." {BIOPROCESS AND BIOSYSTEMS ENGINEERING}. {35} (Submitted): {1603-1614}. Abstract
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Simon, Levente L., Hajnalka Pataki, Gyoergy Marosi, Fabian Meemken, Konrad Hungerbuehler, Alfons Baiker, Srinivas Tummala, Brian Glennon, Martin Kuentz, Gerry Steele, Herman J. M. Kramer, James W. Rydzak, Zengping Chen, Julian Morris, Francois Kjell, Ravendra Singh, Rafiqul Gani, Krist V. Gernaey, Marjatta Louhi-Kultanen, John O'Reilly, Niklas Sandler, Osmo Antikainen, Jouko Yliruusi, Patrick Frohberg, Joachim Ulrich, Richard D. Braatz, Tom Leyssens, Moritz von Stosch, Rui Oliveira, Reginald B. H. Tan, Huiquan Wu, Mansoor Khan, Des O'Grady, Anjan Pandey, Remko Westra, Emmanuel Delle-Case, Detlef Pape, Daniele Angelosante, Yannick Maret, Olivier Steiger, Miklos Lenner, Kaoutar Abbou-Oucherif, Zoltan K. Nagy, James D. Litster, Vamsi Krishna Kamaraju, and Min-Sen Chiu. "{Assessment of Recent Process Analytical Technology (PAT) Trends: A Multiauthor Review}." {ORGANIC PROCESS RESEARCH & DEVELOPMENT}. {19} (Submitted): {3-62}. Abstract
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Carrondo, Manuel, Nuno Carinhas, Vicente Bernal, Cristina Peixoto, Rui Oliveira, and Paula Alves. "{Baculovirus for gene therapy: use of metabolomics for production and membranes for purification}." {HUMAN GENE THERAPY}. {20} (Submitted): {1401-1402}. Abstract
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Carinhas, Nuno, Vicente Bernal, Adriana Y. Yokomizo, Manuel J. T. Carrondo, Rui Oliveira, and Paula M. Alves. "{Baculovirus production for gene therapy: the role of cell density, multiplicity of infection and medium exchange}." {APPLIED MICROBIOLOGY AND BIOTECHNOLOGY}. {81} (Submitted): {1041-1049}. Abstract
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Peres, J., R. Oliveira, and Feyo S. de Azevedo. "{Bioprocess hybrid parametric/nonparametric modelling based on the concept of mixture of experts}." {BIOCHEMICAL ENGINEERING JOURNAL}. {39} (Submitted): {190-206}. Abstract
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Teixeira, A. P., J. J. Clemente, A. E. Cunha, M. J. T. Carrondo, and R. Oliveira. "{Bioprocess iterative batch-to-batch optimization based on hybrid parametric/nonparametric models}." {BIOTECHNOLOGY PROGRESS}. {22} (Submitted): {247-258}. Abstract
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Goerke, Aaron R., Johannes Scholten, Nedim Emil Altaras, Ana Teixeira, Joao Clemente, Antonio Cunha, Rui Oliveira, and John G. Aunins. "{BIOT 328-Fast development of Pichia pastoris cultures based on hybrid semiparametric process control}." {ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY}. {236} (Submitted). Abstract
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Teixeira, Ana P., Joao M. L. Dias, Nuno Carinhas, Marcos Sousa, Joao J. Clemente, Antonio E. Cunha, Moritz von Stosch, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Cell functional enviromics: Unravelling the function of environmental factors}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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Freitas, Filomena, Vitor D. Alves, Joana Pais, Nuno Costa, Cristina Oliveira, Luis Mafra, Loic Hilliou, Rui Oliveira, and Maria A. M. Reis. "{Characterization of an extracellular polysaccharide produced by a Pseudomonas strain grown on glycerol}." {BIORESOURCE TECHNOLOGY}. {100} (Submitted): {859-865}. Abstract
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Teixeira, Ana P., Sonia Sa Santos, Nuno Carinhas, Rui Oliveira, and Paula M. Alves. "{Combining metabolic flux analysis tools and C-13 NMR to estimate intracellular fluxes of cultured astrocytes}." {NEUROCHEMISTRY INTERNATIONAL}. {52} (Submitted): {478-486}. Abstract
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Freitas, F., C. A. V. Torres, V. Alves, M. Cruz, R. Oliveira, and M. A. M. Reis. "{Conversion of glycerol into a new high-value fucose-containing bacterial exopolysaccharide}." {JOURNAL OF BIOTECHNOLOGY}. {150} (Submitted): {S88}. Abstract
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Oliveira, R., R. Simutis, and SF de Azevedo. "{Design of a stable adaptive controller for driving aerobic fermentation processes near maximum oxygen transfer `capacity}." {JOURNAL OF PROCESS CONTROL}. {14} (Submitted): {617-626}. Abstract
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Pardelha, Filipa, Maria G. E. Albuquerque, Maria A. M. Reis, Rui Oliveira, and Joao M. L. Dias. "{Dynamic metabolic modelling of volatile fatty acids conversion to polyhydroxyalkanoates by a mixed microbial culture}." {NEW BIOTECHNOLOGY}. {31} (Submitted): {335-344}. Abstract
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Alves, Vitor D., Filomena Freitas, Nuno Costa, Monica Carvalheira, Rui Oliveira, Maria P. Goncalves, and Maria A. M. Reis. "{Effect of temperature on the dynamic and steady-shear rheology of a new microbial extracellular polysaccharide produced from glycerol byproduct}." {CARBOHYDRATE POLYMERS}. {79} (Submitted): {981-988}. Abstract
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Freitas, Filomena, Vitor D. Alves, Monica Carvalheira, Nuno Costa, Rui Oliveira, and Maria A. M. Reis. "{Emulsifying behaviour and rheological properties of the extracellular polysaccharide produced by Pseudomonas oleovorans grown on glycerol byproduct}." {CARBOHYDRATE POLYMERS}. {78} (Submitted): {549-556}. Abstract
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Roldao, Antonio, Rui Oliveira, Manuel J. T. Carrondo, and Paula M. Alves. "{Error assessment in recombinant baculovirus titration: Evaluation of different methods}." {JOURNAL OF VIROLOGICAL METHODS}. {159} (Submitted): {69-80}. Abstract
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Ferreira, A. R., J. M. L. Dias, M. von Stosch, J. Clemente, A. E. Cunha, and Rui Oliveira. "{Fast development of Pichia pastoris GS115 Mut(+) cultures employing batch-to-batch control and hybrid semi-parametric modeling}." {BIOPROCESS AND BIOSYSTEMS ENGINEERING}. {37} (Submitted): {629-639}. Abstract
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