Publications

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Journal Article
Teixeira, A. P., J. J. Clemente, A. E. Cunha, M. J. T. Carrondo, and R. Oliveira. "{Bioprocess iterative batch-to-batch optimization based on hybrid parametric/nonparametric models}." {BIOTECHNOLOGY PROGRESS}. {22} (Submitted): {247-258}. Abstract
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Goerke, Aaron R., Johannes Scholten, Nedim Emil Altaras, Ana Teixeira, Joao Clemente, Antonio Cunha, Rui Oliveira, and John G. Aunins. "{BIOT 328-Fast development of Pichia pastoris cultures based on hybrid semiparametric process control}." {ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY}. {236} (Submitted). Abstract
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Teixeira, Ana P., Joao M. L. Dias, Nuno Carinhas, Marcos Sousa, Joao J. Clemente, Antonio E. Cunha, Moritz von Stosch, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Cell functional enviromics: Unravelling the function of environmental factors}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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Freitas, Filomena, Vitor D. Alves, Joana Pais, Nuno Costa, Cristina Oliveira, Luis Mafra, Loic Hilliou, Rui Oliveira, and Maria A. M. Reis. "{Characterization of an extracellular polysaccharide produced by a Pseudomonas strain grown on glycerol}." {BIORESOURCE TECHNOLOGY}. {100} (Submitted): {859-865}. Abstract
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Teixeira, Ana P., Sonia Sa Santos, Nuno Carinhas, Rui Oliveira, and Paula M. Alves. "{Combining metabolic flux analysis tools and C-13 NMR to estimate intracellular fluxes of cultured astrocytes}." {NEUROCHEMISTRY INTERNATIONAL}. {52} (Submitted): {478-486}. Abstract
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Freitas, F., C. A. V. Torres, V. Alves, M. Cruz, R. Oliveira, and M. A. M. Reis. "{Conversion of glycerol into a new high-value fucose-containing bacterial exopolysaccharide}." {JOURNAL OF BIOTECHNOLOGY}. {150} (Submitted): {S88}. Abstract
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Oliveira, R., R. Simutis, and SF de Azevedo. "{Design of a stable adaptive controller for driving aerobic fermentation processes near maximum oxygen transfer `capacity}." {JOURNAL OF PROCESS CONTROL}. {14} (Submitted): {617-626}. Abstract
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Pardelha, Filipa, Maria G. E. Albuquerque, Maria A. M. Reis, Rui Oliveira, and Joao M. L. Dias. "{Dynamic metabolic modelling of volatile fatty acids conversion to polyhydroxyalkanoates by a mixed microbial culture}." {NEW BIOTECHNOLOGY}. {31} (Submitted): {335-344}. Abstract
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Alves, Vitor D., Filomena Freitas, Nuno Costa, Monica Carvalheira, Rui Oliveira, Maria P. Goncalves, and Maria A. M. Reis. "{Effect of temperature on the dynamic and steady-shear rheology of a new microbial extracellular polysaccharide produced from glycerol byproduct}." {CARBOHYDRATE POLYMERS}. {79} (Submitted): {981-988}. Abstract
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Freitas, Filomena, Vitor D. Alves, Monica Carvalheira, Nuno Costa, Rui Oliveira, and Maria A. M. Reis. "{Emulsifying behaviour and rheological properties of the extracellular polysaccharide produced by Pseudomonas oleovorans grown on glycerol byproduct}." {CARBOHYDRATE POLYMERS}. {78} (Submitted): {549-556}. Abstract
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Roldao, Antonio, Rui Oliveira, Manuel J. T. Carrondo, and Paula M. Alves. "{Error assessment in recombinant baculovirus titration: Evaluation of different methods}." {JOURNAL OF VIROLOGICAL METHODS}. {159} (Submitted): {69-80}. Abstract
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Ferreira, A. R., J. M. L. Dias, M. von Stosch, J. Clemente, A. E. Cunha, and Rui Oliveira. "{Fast development of Pichia pastoris GS115 Mut(+) cultures employing batch-to-batch control and hybrid semi-parametric modeling}." {BIOPROCESS AND BIOSYSTEMS ENGINEERING}. {37} (Submitted): {629-639}. Abstract
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Pardelha, Filipa, Maria G. E. Albuquerque, Maria A. M. Reis, Joao M. L. Dias, and Rui Oliveira. "{Flux balance analysis of mixed microbial cultures: Application to the production of polyhydroxyalkanoates from complex mixtures of volatile fatty acids}." {JOURNAL OF BIOTECHNOLOGY}. {162} (Submitted): {336-345}. Abstract
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Teixeira, Ana P., Tiago M. Duarte, Rui Oliveira, Manuel J. T. Carrondo, and Paula M. Alves. "{High-throughput analysis of animal cell cultures using two-dimensional fluorometry}." {JOURNAL OF BIOTECHNOLOGY}. {151} (Submitted): {255-260}. Abstract
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Carrondo, Manuel J. T., Paula M. Alves, Nuno Carinhas, Jarka Glassey, Friedemann Hesse, Otto-Wilhelm Merten, Martina Micheletti, Thomas Noll, Rui Oliveira, Udo Reichl, Arne Staby, Ana P. Teixeira, Henry Weichert, and Carl-Fredrik Mandenius. "{How can measurement, monitoring, modeling and control advance cell culture in industrial biotechnology?}." {BIOTECHNOLOGY JOURNAL}. {7} (Submitted): {1522-1529}. Abstract
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Teixeira, Ana P., Carlos Alves, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Hybrid elementary flux analysis/nonparametric modeling: application for bioprocess control}." {BMC BIOINFORMATICS}. {8} (Submitted). Abstract
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Carinhas, Nuno, Vicente Bernal, Ana P. Teixeira, Manuel J. T. Carrondo, Paula M. Alves, and Rui Oliveira. "{Hybrid metabolic flux analysis: combining stoichiometric and statistical constraints to model the formation of complex recombinant products}." {BMC SYSTEMS BIOLOGY}. {5} (Submitted). Abstract
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von Stosch, Moritz, Steven Davy, Kjell Francois, Vytautas Galvanauskas, Jan-Martijn Hamelink, Andreas Luebbert, Martin Mayer, Rui Oliveira, Ronan O'Kennedy, Paul Rice, and Jarka Glassey. "{Hybrid modeling for quality by design and PAT - benefits and challenges of applications in biopharmaceutical industry}." {BIOTECHNOLOGY JOURNAL}. {9} (Submitted): {719-726}. Abstract
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Ricardo, Ana R., Rui Oliveira, Svetlozar Velizarov, Maria A. M. Reis, and Joao G. Crespo. "{Hybrid modeling of counterion mass transfer in a membrane-supported biofilm reactor}." {BIOCHEMICAL ENGINEERING JOURNAL}. {62} (Submitted): {22-33}. Abstract
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Teixeira, Ana P., Nuno Carinhas, Jodo M. L. Dias, Pedro Cruz, Paula M. Alves, Manuel J. T. Carrondo, and Rui Oliveira. "{Hybrid semi-parametric mathematical systems: Bridging the gap between systems biology and process engineering}." {JOURNAL OF BIOTECHNOLOGY}. {132} (Submitted): {418-425}. Abstract
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von Stosch, Moritz, Rui Oliveira, Joana Peres, and Sebastiao Feyo de Azevedo. "{Hybrid semi-parametric modeling in process systems engineering: Past, present and future}." {COMPUTERS & CHEMICAL ENGINEERING}. {60} (Submitted): {86-101}. Abstract
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Castanheiro, JE, I. M. Fonseca, A. M. Ramos, R. Oliveira, and J. Vital. "{Hydration of alpha-pinene over molybdophosphoric acid immobilized in hydrophobically modified PVA membranes}." {CATALYSIS TODAY}. {104} (Submitted): {296-304}. Abstract
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Carinhas, Nuno, Vicente Bernal, Francisca Monteiro, Manuel J. T. Carrondo, Rui Oliveira, and Paula M. Alves. "{Improving baculovirus production at high cell density through manipulation of energy metabolism}." {METABOLIC ENGINEERING}. {12} (Submitted): {39-52}. Abstract
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Teixeira, Ana P., Carla A. M. Portugal, Nuno Carinhas, Joao M. L. Dias, Joao P. Crespo, Paula M. Alves, M. J. T. Carrondo, and Rui Oliveira. "{In Situ 2D Fluorometry and Chemometric Monitoring of Mammalian Cell Cultures}." {BIOTECHNOLOGY AND BIOENGINEERING}. {102} (Submitted): {1098-1106}. Abstract
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Roldao, Antonio, Helena L. A. Vieira, Paula M. Alves, R. Oliveira, and Manuel J. T. Carrondo. "{Intracellular dynamics in rotavirus-like particles production: Evaluation of multigene and monocistronic infection strategies}." {PROCESS BIOCHEMISTRY}. {41} (Submitted): {2188-2199}. Abstract
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