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A
Machado, Jorge, Nancy Paul, Gabrielle Soum-Sidikov, Louis Duval, Stéphane Macé, Robert Loetzsch, Martino Trassinelli, and Paul Indelicato. "Absolute measurement of the relativistic magnetic dipole transition in He-like sulfur." Physical Review A. 107 (2023): 032821. AbstractWebsite
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Pinheiro, Daniel, Pedro Amaro, Jorge Machado, Mauro Guerra, and José Paulo Santos. "Angular distribution of characteristic X-rays following electron impact ionization." Radiation Physics and Chemistry. 203 (2023). Abstract

In this paper, we present a theoretical study of the X-ray fluorescence emission after vacancy of K-shell due to electron impact ionization. In particular, we focus on the angular distributions of the characteristic Kα emission lines following this process. Rh was chosen for the analysis since it is a common element in X-ray tube anodes. In this analysis we also considered some elements along the period-4, i.e., Ni, Cu and Co as case-studies. In doing so, we studied the magnetic sub-level population of the ionized states, which is directly related to the angular distribution of the emission. A relative low angular distribution for the Kα emission of Rh of 0.5% was observed, which makes the assumption of isotropic emission correct for most studies. Moreover, a comparison with the respective angular emission for adjacent elements in the fourth period of the periodic table shows that this isotropy is attributed to a small total angular momentum of the resulting configurations after ionization, as well as to opposite angular distributions of the various transitions, which average to a maximum of 0.7% angular asymmetry in Ni.

C
Teubig, P., P. Remmels, P. Klenze, H. Alvarez-Pol, E. Alves, J. M. Boillos, P. Cabanelas, R. C. da Silva, D. Cortina-Gil, J. Cruz, D. Ferreira, M. Fonseca, D. Galaviz, E. Galiana, R. Gernhäuser, D. González, A. Henriques, A. P. Jesus, H. Luís, J. Machado, L. Peralta, J. Rocha, A. M. Sánchez-Benítez, H. Silva, and P. Velho. "Challenging the Calorimeter CALIFA for FAIR Using High Energetic Photons." Eds. José-Enrique García-Ramos, María V. Andrés, José Lay A. Valera, Antonio M. Moro, and Francisco Pérez-Bernal. Cham: Basic Concepts in Nuclear Physics: Theory, Experiments and Applications, 2019. 245-246. Abstract
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Gabriel, A., J. Machado, R. Gomes, J. M. P. Coelho, C. O. Silva, C. P. Reis, J. P. Santos, and P. Vieira. "Concentrated photoactivation: focusing light through scattering." World Congress on Medical Physics and Biomedical Engineering, June 7-12, 2015, Toronto, Canada. Ed. David A. Jaffray. Cham: Springer International Publishing, 2015. 1727-1730. Abstract

Light has long being used in medicine; however, the high scattering of biological tissues always hindered its use. The aim of this work is the development of methodologies to focus light inside biological tissues. Geant4/GAMOS Monte Carlo platform was used to simulate the possibility of parameterize the time delay of multiple sources of external light, offset in time, as a function of the interest region position in order to create constructive interferences in a breast sample. A computational model was implemented and the platform was configured in order to perform these simulations. Preliminary results using a single light source were performed. It was concluded that scattering in adipose tissue is very high which is consistent with previous studies.

E
Carvalho, Patrícia M., Eva Marguí, Aldona Kubala-Kukuś, Dariusz Banaś, Jorge Machado, Diogo Casal, Diogo Pais, José Paulo Santos, and Sofia Pessanha. "Evaluation of different analytical approaches using total reflection X-ray fluorescence systems for multielemental analysis of human tissues with different adipose content." Spectrochimica Acta - Part B Atomic Spectroscopy. 198 (2022). Abstract

Elemental content plays an important role in biological processes, and so, the multielemental analysis of human tissue samples is required in biomedical research. Still, the small amount of available biological samples and the adipose content of the samples can be major setbacks for the accurate determination of elemental content. In this study, we explored the potential of several analytical approaches combined with total reflection X-ray fluorescence spectrometry (TXRF) for multielemental analysis of human tissues with different adipose content (colon, heart, liver, lung, muscle, intestine, skin, stomach, uterus, bladder and aorta). The capabilities and limitations of different sample treatment procedures (suspension and acidic digestion) and two TXRF systems with different anode configurations (Mo and W X-ray tubes) have been evaluated for such purpose. Results showed that for tissues with a higher fat content (e.g., skin, and intestine) the best strategy was the acidic digestion of the sample before TXRF analysis. However, for other tissues, acceptable results were obtained by suspending 20 mg of powdered material in 1 mL of 2 M nitric acid. A further enhancement of the limits of detection and accuracy of the results was achieved if using Mo-TXRF systems, especially for the determination of low Z elements (e.g., K, and Ca) and of elements present at low concentrations (e.g., Cu) in the human tissues. Finally, results by TXRF analysis were compared with those obtained with μ-EDXRF and ICP-OES, and a good agreement was obtained.

Pessanha, Sofia, Alexandre Veiga, Delfim Doutel, Fernanda Silva, João Silva, Patrícia M. Carvalho, Sofia Barbosa, José Paulo Santos, Ana Félix, and Jorge Machado. "Evaluation of the influence of the formalin fixation time on the elemental content of tissues measured with X-ray fluorescence." Spectrochimica Acta Part B: Atomic Spectroscopy. 205 (2023): 106704. AbstractWebsite
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I
Ito, Yoshiaki, Tatsunori Tochio, Michiru Yamashita, Sei Fukushima, Takashi Shoji, Katarzyna Słabkowska, Łukasz Syrocki, Marek Polasik, Jana Padežnik Gomilsek, José Pires Marques, Jorge Miguel Sampaio, Mauro Guerra, Jorge Machado, José Paulo Santos, Assala Hamidani, Abdelhalim Kahoul, Paul Indelicato, and Fernando Parente. "Intensity Ratio of Kβ/Kα in Selected Elements from Mg to Cu, and the Chemical Effects of Cr Kα1,2 Diagram Lines and Cr Kβ/Kα Intensity Ratio in Cr Compounds." International Journal of Molecular Sciences. 24 (2023): 5570. Abstract

K$_{\alpha , \beta}$ X-ray lines from photon excitation were measured in selected elements from Mg to Cu using a high-resolution double-crystal X-ray spectrometer with a proportional counter, and the K$_beta$/K$_\alpha$ intensity ratio for each element was obtained, after correcting for self-absorption, detection efficiency, and crystal reflectance. This intensity ratio increases rapidly from Mg to Ca but, in the 3d elements region, the increase becomes slower. This is related to the intensity of the Kβ line involving valence electrons. The slow increase of this ratio in the 3d elements region is thought to be due to the correlation between 3d and 4s electrons. Moreover, the chemical shifts, FWHM, asymmetry indices, and Kβ/Kα intensity ratios of the Cr compounds, due to different valences, were also investigated using the same double-crystal X-ray spectrometer. The chemical effects were clearly observed, and the Kβ/Kα intensity ratio was found to be compound-dependent for Cr.

K
Pinheiro, Daniel, André Fernandes, César Godinho, Jorge Machado, Gonçalo Baptista, Filipe Grilo, Luís Sustelo, Jorge M. Sampaio, Pedro Amaro, Roberta G. Leitão, José P. Marques, Fernando Parente, Paul Indelicato, Miguel de Avillez, José Paulo Santos, and Mauro Guerra. "K- and L-shell theoretical fluorescence yields for the Fe isonuclear sequence." Radiation Physics and Chemistry. 203 (2023): 110594. Abstract

In this work, we present K- and L- shell fluorescence yield values of the full isonuclear sequence of Fe ions, using a state-of-the-art multiconfiguration Dirac–Fock approach. These results may be of importance for spectral fitting and plasma modeling, both in laboratory and astrophysical studies, where Fe is an important benchmark element. The K-shell fluorescence yields were found to be very similar up to the removal of 14 electrons.

L
Amaro, P., A. Adamczak, Abdou M. Ahmed, L. Affolter, F. D. Amaro, P. Carvalho, T. L. Chen, L. M. P. Fernandes, M. Ferro, D. Goeldi, T. Graf, M. Guerra, T. W. Hänsch, C. A. O. Henriques, Y. C. Huang, P. Indelicato, O. Kara, K. Kirch, A. Knecht, F. Kottmann, Y. W. Liu, J. Machado, M. Marszalek, R. D. P. Mano, C. M. B. Monteiro, F. Nez, J. Nuber, A. Ouf, N. Paul, R. Pohl, E. Rapisarda, J. M. F. dos Santos, J. P. Santos, P. A. O. C. Silva, L. Sinkunaite, J. T. Shy, K. Schuhmann, S. Rajamohanan, A. Soter, L. Sustelo, D. Taqqu, L. B. Wang, F. Wauters, P. Yzombard, M. Zeyen, and A. Antognini. "Laser excitation of the 1s-hyperfine transition in muonic hydrogen." SciPost Physics. 13 (2022). Abstract

The CREMA collaboration is pursuing a measurement of the ground-state hyperfine splitting (HFS) in muonic hydrogen (μp) with 1 ppm accuracy by means of pulsed laser spectroscopy to determine the two-photon-exchange contribution with 2×10-4 relative accuracy. In the proposed experiment, the μp atom undergoes a laser excitation from the singlet hyperfine state to the triplet hyperfine state, then is quenched back to the singlet state by an inelastic collision with a H2 molecule. The resulting increase of kinetic energy after the collisional deexcitation is used as a signature of a successful laser transition between hyperfine states. In this paper, we calculate the combined probability that a μp atom initially in the singlet hyperfine state undergoes a laser excitation to the triplet state followed by a collisional-induced deexcitation back to the singlet state. This combined probability has been computed using the optical Bloch equations including the inelastic and elastic collisions. Omitting the decoherence effects caused by the laser bandwidth and collisions would overestimate the transition probability by more than a factor of two in the experimental conditions. Moreover, we also account for Doppler effects and provide the matrix element, the saturation fluence, the elastic and inelastic collision rates for the singlet and triplet states, and the resonance linewidth. This calculation thus quantifies one of the key unknowns of the HFS experiment, leading to a precise definition of the requirements for the laser system and to an optimization of the hydrogen gas target where μp is formed and the laser spectroscopy will occur.

Q
S
Machado, J., A. Blanco, P. Fonte, D. Galaviz, L. Lopes, Ferreira R. Marques, and P. Teubig. "Simulations of an innovative ToF detector for high energy neutrons based on iron-less RPCs." Proceedings of the XIth Workshop on Resistive Plate Chambers and Related Detectors (RPC2012). 5-10 February, 2012. Laboratori Nazionali di Frascati dell'INFN-Frascati (Rome)-Italy. Published online at https://pos.sissa.it/159/039/pdf. 2012. Abstract
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Revel, A., et al. "Strong Neutron Pairing in $\textrm{core}+4n$ Nuclei." Phys. Rev. Lett.. 120 (2018): 152504. AbstractWebsite
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Altstadt, S. G., et al. "{$^{13,14}$B(n, $\gamma$) via Coulomb Dissociation for Nucleosynthesis towards the r-Process}." Nuclear Data Sheets. 120 (2014): 197-200. AbstractWebsite
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Machado, Jorge, Patr{\'ıcia Miguel Carvalho, Ana Félix, Delfin Doutel, José Paulo Santos, Maria Luisa Carvalho, and Sofia Pessanha. "{Accuracy improvement in XRF analysis for the quantification of elements ranging from tenths to thousands $μ$g g$^{-1}$ in human tissues using different matrix reference materials}." Journal of Analytical Atomic Spectrometry. 35 (2020): 2920-2927. AbstractWebsite

Journal of Analytical Atomic Spectrometry (2020), 35, 2920-2927, doi:10.1039/D0JA00307G

Ensina, Ana, Patr{\'ıcia M. Carvalho, Jorge Machado, Maria Luisa Carvalho, Diogo Casal, Diogo Pais, José Paulo Santos, António A. Dias, and Sofia Pessanha. "{Analysis of human tissues using Energy Dispersive X Ray Fluorescence ? Dark matrix determination for the application to cancer research}." Journal of Trace Elements in Medicine and Biology. 68 (2021): 126837. AbstractWebsite

Journal of Trace Elements in Medicine and Biology, 68 (2021) 126837. doi:10.1016/j.jtemb.2021.126837

Röder, Marko, et al. "{Coulomb dissociation of $^{20,21}$N}." Physical Review C. 93 (2016): 065807. AbstractWebsite
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Cabanelas, P., J. Cruz, M. Fonseca, A. Henriques, F. Louren{\c c}o, H. Lu{\'ıs, J. Machado, Pires J. Ribeiro, A. M. Sánchez-Ben{\'ıtez, P. Teubig, P. Velho, M. Zarza-Moreno, D. Galaviz, and A. P. Jesus. "{Cross sections for proton induced high energy $\gamma$-ray emission (PIGE) in reaction F(p,$\gamma$)O at incident proton energies between 1.5 and 4 MeV}." Nuclear Inst. and Methods in Physics Research, B. 381 (2016): 110-113. AbstractWebsite
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Guerra, M., Th Stöhlker, P. Amaro, J. Machado, and J. P. Santos. "{Electron impact ionization cross-sections for few-electron uranium ions}." Journal of Physics B: Atomic, Molecular and Optical Physics. 48 (2015): 1-5. AbstractWebsite

Journal of Physics B: Atomic, Molecular and Optical Physics, 48(2015) 144027. doi:10.1088/0953-4075/48/14/144027

Carvalho, Patr{\'ıcia M. S., Sofia Pessanha, Jorge Machado, Ana Lu{\'ısa Silva, João Veloso, Diogo Casal, Diogo Pais, and José Paulo Santos. "{Energy dispersive X-ray fluorescence quantitative analysis of biological samples with the external standard method}." Spectrochimica Acta Part B: Atomic Spectroscopy. 174 (2020): 105991. AbstractWebsite
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Antognini, A., K. Schuhmann, F. D. Amaro, P. Amaro, M. Abdou-Ahmed, F. Biraben, T. L. Chen, D. S. Covita, A. J. Dax, M. Diepold, L. M. P. Fernandes, B. Franke, S. Galtier, A. L. Gouvea, J. Götzfried, T. Graf, T. W. Hänsch, M. Hildebrandt, P. Indelicato, L. Julien, K. Kirch, A. Knecht, F. Kottmann, J. J. Krauth, Y. W. Liu, J. Machado, C. M. B. Monteiro, F. Mulhauser, F. Nez, J. P. Santos, J. M. F. dos Santos, C. I. Szabo, D. Taqqu, J. F. C. A. Veloso, A. Voss, B. Weichelt, and R. Pohl. "{Experiments towards resolving the proton charge radius puzzle}." Vol. 113. EPJ Web of Conferences, 2016. 01006. Abstract
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Cruz, J., M. Fonseca, D. Galaviz, A. Henriques, H. Lu{\'ıs, J. Machado, P. Teubig, P. Velho, V. Manteigas, and A. P. Jesus. "{Fluorine depth profiling based on the 19F(p,p’$\gamma$)19F excitation function}." The European Physical Journal Plus. 136 (2021): 1-12. AbstractWebsite

Ion beam analysis of fluorine has applications in research on teeth and bones, materials science, geochemistry and archaeometry. A novel PIGE (particle induced gamma-ray emission) standard free methodology for fluorine content determination for in-depth heterogeneous samples based on the excitation function of the 19F(p,p’$\gamma$)19F nuclear reaction is presented. New precise cross section measurements of this reaction in the proton energy range 2.1 to 4.1 MeV have been performed. In addition, the ERYA-Profiling code, a computer program specially developed for PIGE analysis of in-depth heterogeneous samples, employed this new excitation function in a case study where different fluorine simulated depth profiles probed the capability of insight into fluorine distributions in a given sample, showing the potential of PIGE analysis.

{Guerra, Mauro, Jorge Sampaio, Gon{\c c}alo V{\'ılia, César Godinho, Daniel Pinheiro, Pedro Amaro, José Marques, Jorge Machado, Paul Indelicato, Fernando Parente, and José Santos. "{Fundamental Parameters Related to Selenium K$\alpha$ and K$\beta$ Emission X-ray Spectra}." Atoms. 9 (2021): 8-10. AbstractWebsite

We present relativistic ab initio calculations of fundamental parameters for atomic selenium, based on the Multiconfiguration Dirac-Fock method. In detail, fluorescence yields and subshell linewidths, both of K shell, as well as K$\beta$ to K$\alpha$ intensity ratio are provided, showing overall agreement with previous theoretical calculations and experimental values. Relative intensities were evaluated assuming the same ionization cross-section for the K-shell hole states, leading to a statistical distribution of these initial states. A method for estimating theoretical linewidths of X-ray lines, where the lines are composed by a multiplet of fine-structure levels that are spread in energy, is proposed. This method provides results that are closer to K$\alpha$1,2 experimental width values than the usual method, although slightly higher discrepancies occur for the K$\beta$1,3 lines. This indicates some inaccuracies in the calculation of Auger rates that have a higher contribution for partial linewidths of the subshells involved in the K$\beta$1,3 profile. Apart from this, the calculated value of K$\beta$ to K$\alpha$ intensity ratio, which is less sensitive to Auger rates issues, is in excellent agreement with recommended values.