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Flexible molecules with defined shape. X. Synthesis and conformational study of 1,5-diaza-cis-decalin, Santos, AGD, Klute W., Torode J., Bohm V. P. W., Cabrita E., Runsink J., and Hoffmann RW , New Journal of Chemistry, SEP 1998, Volume 22, Number 9, p.993-997, (1998) Abstract
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Characterization of reactive intermediates by diffusion-ordered NMR spectroscopy: A snapshot of the reaction of (CO2)-C-13 with [Cp2Zr(Cl)H], Schlorer, NE, Cabrita E. J., and Berger S. , Angewandte Chemie-International Edition, 2002, Volume 41, Number 1, p.107-109, (2002) Abstract
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Deacidification of paper using dispersions of Ca(OH)(2) nanoparticles in isopropanol. Study of efficiency, Sequeira, S., Casanova C., and Cabrita E. J. , Journal of Cultural Heritage, OCT-DEC 2006, Volume 7, Number 4, p.264-272, (2006) Abstract
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Antifungals on paper conservation: An overview , Sequeira, Sílvia, Cabrita Eurico J., and Macedo Filomena M. , International Biodeterioration & Biodegradation, Volume 74, p.67-84, (2012) Abstract

Since its invention, paper has become one of the main carriers of our cultural, scientific, political, economic and historical information. Given the importance of this material, its preservation is a matter of great interest. Paper can be deteriorated due to physical, chemical and biological agents. Within microorganisms, fungi are the major paper biodeteriogens. Throughout history, several methods have been used to prevent and stop fungal deterioration on paper based materials. In this work we present a review of the main chemical and physical methods used to avoid fungal paper biodeterioration until nowadays and also of some new approaches tested recently. The advantages and disadvantages of these methods are discussed as well as their health effects. Studies regarding antifungal compositions, methods of application, performance and effects on the treated materials are also presented with the aim of providing a clear set of conclusions on the topic. (C) 2012 Elsevier Ltd. All rights reserved.

Development of molecularly imprinted co-polymeric devices for controlled delivery of flufenamic acid using supercritical fluid technology, da Silva, Mara Soares, Nobrega Franklin L., Aguiar-Ricardo Ana, Cabrita Eurico J., and Casimiro Teresa , Journal of Supercritical Fluids, AUG 2011, Volume 58, Number 1, p.150-157, (2011) Abstract
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Epitope mapping of imidazolium cations in ionic liquid–protein interactions unveils the balance between hydrophobicity and electrostatics towards protein destabilisation, Silva, Micael, Figueiredo Angelo Miguel, and Cabrita Eurico J. , Phys. Chem. Chem. Phys. , Volume in press, (2014) Abstract

We investigated imidazolium-based ionic liquid (IL) interactions with human serum albumin (HSA) to discern the level of cation interactions towards protein stability. STD-NMR spectroscopy was used to observe the imidazolium IL protons involved in direct binding and to identify the interactions responsible for changes in Tm as accessed by differential scanning calorimetry (DSC). Cations influence protein stability less than anions but still significantly. It was found that longer alkyl side chains of imidazolium- based ILs (more hydrophobic) are associated with a higher destabilisation effect on HSA than short-alkyl groups (less hydrophobic). The reason for such destabilisation lies on the increased surface contact area of the cation with the protein, particularly on the hydrophobic contacts promoted by the terminus of the alkyl chain. The relevance of the hydrophobic contacts is clearly demonstrated by the introduction of a polar moiety in the alkyl chain: a methoxy or alcohol group. Such structural modification reduces the degree of hydrophobic contacts with HSA explaining the lesser extent of protein destabilisation when compared to longer alkyl side chain groups: above [C2mim]+. Competition STD-NMR experiments using [C2mim]+, [C4mim]+ and [C2OHmim]+ also validate the importance of the hydrophobic interactions. The combined effect of cation and anion interactions was explored using 35Cl NMR. Such experiments show that the nature of the cation has no influence on the anion–protein contacts, still the nature of the anion modulates the cation–protein interaction. Herein we propose that more destabilising anions are likely to be a result of a partial contribution from the cation as a direct consequence of the different levels of interaction (cation–anion pair and cation–protein).

Shaping the molecular assemblies of native and alkali- modified agars in dilute and concentrated aqueous media via microwave-assisted extraction, Sousa, Ana M. M., Borges João, Silva Fernando, Ramos Ana M., Cabrita Eurico J., and Gonçalves Maria Pilar , Soft Matter, Volume 9, p.3131-3139, (2013) AbstractWebsite

The use of agar-based biomaterials for the development of emerging areas, such as tissue engineering or ‘smart materials’ production has recently gained great interest. Understanding how these gel-forming polysaccharides self-organise in aqueous media and how these associations can be tuned to meet the specific needs of each application is thus of great relevance. As an extension of previous pioneering research concerning the application of the microwave-assisted extraction (MAE) technique in the recovery of native (NA) and alkali-modified (AA) agars, this article focuses on the different molecular assemblies assumed by these novel NA and AA when using different MAE routes. The molecular architectures in dilute (5, 10, 50 and 100 mg mL1) and concentrated (1.5% (w/w)) aqueous media were imaged by AFM and cryoSEM, respectively. Relevant structural and physicochemical properties were investigated to support the microscopic data. Different extraction routes led to polysaccharides with unique properties, which in turn resulted in different molecular assemblies. Even at 5 mg mL1, AFM images included individual fibers, cyclic segments, aggregates and local networks. At higher polymer concentrations, the structures further aggregated forming multilayer polymeric networks for AA. The more compact and denser 3D networks of AA, imaged by cryoSEM, and their higher resistance to large deformations matched the 2D-shapes observed by AFM. Depending on the nature of the AA chains, homogeneous or heterogeneous growth of assemblies was seen during network formation. The obtained results support well the view of double helix formation followed by intensive double helix association proposed for agar gelation.

Structural, Physical, and Chemical Modifications Induced by Microwave Heating on Native Agar-like Galactans, Sousa, Ana M. M., Morais Simone, Abreu Maria H., Pereira Rui, Sousa-Pinto Isabel, Cabrita Eurico J., Delerue-Matos Cristina, and Gonca̧lves Maria Pilar , Jornal of Agricultural and Food Chemistry , Volume 60, p.4977-4985, (2012) Abstract

Native agars from Gracilaria vermiculophylla produced in sustainable aquaculture systems (IMTA) were extracted under conventional (TWE) and microwave (MAE) heating. The optimal extracts from both processes were compared in terms of their properties. The agars’ structure was further investigated through Fourier transform infrared and NMR spectroscopy. Both samples showed a regular structure with an identical backbone, β-D-galactose (G) and 3,6-anhydro-α-L-galactose (LA) units; a considerable degree of methylation was found at C6 of the G units and, to a lesser extent, at C2 of the LA residues. The methylation degree in the G units was lower for MAEopt agar; the sulfate content was also reduced. MAE led to higher agar recoveries with drastic extraction time and solvent volume reductions. Two times lower values of [η] and Mv obtained for the MAEopt sample indicate substantial depolymerization of the polysaccharide backbone; this was reflected in its gelling properties; yet it was clearly appropriate for commercial application in soft-texture food products.