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Pinheiro, C., K. Sergeant, C. M. Machado, J. Renaut, and C. P. Ricardo. "Two Traditional Maize Inbred Lines of Contrasting Technological Abilities Are Discriminated by the Seed Flour Proteome." Journal of Proteome Research. 12 (2013): 3152-3165. AbstractWebsite
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Pinheiro, C., K. Sergeant, C. M. Machado, J. Renaut, and C. P. Ricardo. "Two Traditional Maize Inbred Lines of Contrasting Technological Abilities Are Discriminated by the Seed Flour Proteome." Journal of Proteome Research. 12 (2013): 3152-3165. AbstractWebsite
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Teixeira, RT, AM Fortes, H. Bai, C. Pinheiro, and H. Pereira. "Transcriptional profiling of cork oak phellogenic cells isolated by laser microdissection." Planta. 247 (2018): 317-338. AbstractWebsite
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Sergeant, K., C. Pinheiro, JF Hausman, and al.et. "Taking Advantage of Nonspecific Trypsin Cleavages for the Identification of Seed Storage Proteins in Cereals." JOURNAL OF PROTEOME RESEARCH. 8 (2009): 3182-3190. Abstract
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Sergeant, K., C. Pinheiro, JF Hausman, and al.et. "Taking Advantage of Nonspecific Trypsin Cleavages for the Identification of Seed Storage Proteins in Cereals." JOURNAL OF PROTEOME RESEARCH. 8 (2009): 3182-3190. Abstract
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Pinheiro, C., A. P. Rodrigues, IS de Carvalho, M. M. Chaves, and C. P. Ricardo. "Sugar metabolism in developing lupin seeds is affected by a short-term water deficit." Journal of Experimental Botany. 56 (2005): 2705-2712. Abstract
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Pinheiro, C., A. P. Rodrigues, IS de Carvalho, M. M. Chaves, and C. P. Ricardo. "Sugar metabolism in developing lupin seeds is affected by a short-term water deficit." Journal of Experimental Botany. 56 (2005): 2705-2712. Abstract
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Pinheiro, C., IC Ribeiro, V. Reisinger, S. Planchon, M. M. Veloso, J. Renaut, L. Eichacker, and C. P. Ricardo. "Salinity effect on germination, seedling growth and cotyledon membrane complexes of a Portuguese salt marsh wild beet ecotype." Theoretical and Experimental Plant Physiology. 30 (2018): 113-127. AbstractWebsite
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Zivy, Michel, Stefanie Wienkoop, Jenny Renaut, Carla Pinheiro, Estelle Goulas, and Sebastien Carpentier. "The quest for tolerant varieties: the importance of integrating "omics" techniques to phenotyping." Frontiers in Plant Science. 6 (2015). Abstract
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Pinheiro, Carla, Leonor Guerra-Guimaraes, Teresa S. David, and Ana Vieira. "Proteomics: State of the art to study Mediterranean woody species under stress." Environmental and Experimental Botany. 103 (2014): 117-127. AbstractWebsite
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Pinheiro, Carla, Leonor Guerra-Guimaraes, Teresa S. David, and Ana Vieira. "Proteomics: State of the art to study Mediterranean woody species under stress." Environmental and Experimental Botany. 103 (2014): 117-127. AbstractWebsite
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Chaves, I., C. Pinheiro, JAP Paiva, S. Planchon, K. Sergeant, J. Renaut, JA Graca, G. Costa, AV Coelho, and CPP Ricardo. "Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue." PROTEOMICS. 9 (2009): 4154-4175. Abstract
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Chaves, I., C. Pinheiro, JAP Paiva, S. Planchon, K. Sergeant, J. Renaut, JA Graca, G. Costa, AV Coelho, and CPP Ricardo. "Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue." PROTEOMICS. 9 (2009): 4154-4175. Abstract
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Guerra-Guimaraes, Leonor, Rita Tenente, Carla Pinheiro, Ines Chaves, Maria Ceu do Silva, Fernando M. H. Cardoso, Sebastien Planchon, Danielle R. Barros, Jenny Renaut, and Candido P. Ricardo. "Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix." Frontiers in Plant Science. 6 (2015). AbstractWebsite
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Guerra-Guimaraes, Leonor, Rita Tenente, Carla Pinheiro, Ines Chaves, Maria Ceu do Silva, Fernando M. H. Cardoso, Sebastien Planchon, Danielle R. Barros, Jenny Renaut, and Candido P. Ricardo. "Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix." Frontiers in Plant Science. 6 (2015). Abstract
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Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Chaves, M. M., J. Flexas, and C. Pinheiro. "Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell." Annals of Botany. 103 (2009): 551-560. AbstractWebsite

Plants are often subjected to periods of soil and atmospheric water deficits during their life cycle as well as, in many areas of the globe, to high soil salinity. Understanding how plants respond to drought, salt and co-occurring stresses can play a major role in stabilizing crop performance under drought and saline conditions and in the protection of natural vegetation. Photosynthesis, together with cell growth, is among the primary processes to be affected by water or salt stress. The effects of drought and salt stresses on photosynthesis are either direct (as the diffusion limitations through the stomata and the mesophyll and the alterations in photosynthetic metabolism) or secondary, such as the oxidative stress arising from the superimposition of multiple stresses. The carbon balance of a plant during a period of salt/water stress and recovery may depend as much on the velocity and degree of photosynthetic recovery, as it depends on the degree and velocity of photosynthesis decline during water depletion. Current knowledge about physiological limitations to photosynthetic recovery after different intensities of water and salt stress is still scarce. From the large amount of data available on transcript-profiling studies in plants subjected to drought and salt it is becoming apparent that plants perceive and respond to these stresses by quickly altering gene expression in parallel with physiological and biochemical alterations; this occurs even under mild to moderate stress conditions. From a recent comprehensive study that compared salt and drought stress it is apparent that both stresses led to down-regulation of some photosynthetic genes, with most of the changes being small (ratio threshold lower than 1) possibly reflecting the mild stress imposed. When compared with drought, salt stress affected more genes and more intensely, possibly reflecting the combined effects of dehydration and osmotic stress in salt-stressed plants.

Chaves, M. M., J. Flexas, and C. Pinheiro. "Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell." Annals of Botany. 103 (2009): 551-560. AbstractWebsite
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Pinheiro, C., and M. M. Chaves. "Photosynthesis and drought: can we make metabolic connections from available data?" Journal of Experimental Botany. 62 (2011): 869-882. AbstractWebsite

Photosynthesis is one of the key processes to be affected by water deficits, via decreased CO2 diffusion to the chloroplast and metabolic constraints. The relative impact of those limitations varies with the intensity of the stress, the occurrence (or not) of superimposed stresses, and the species we are dealing with. Total plant carbon uptake is further reduced due to the concomitant or even earlier inhibition of growth. Leaf carbohydrate status, altered directly by water deficits or indirectly (via decreased growth), acts as a metabolic signal although its role is not totally clear. Other relevant signals acting under water deficits comprise: abscisic acid (ABA), with an impact on stomatal aperture and the regulation at the transcription level of a large number of genes related to plant stress response; other hormones that act either concurrently (brassinosteroids, jasmonates, and salycilic acid) or antagonistically (auxin, cytokinin, or ethylene) with ABA; and redox control of the energy balance of photosynthetic cells deprived of CO2 by stomatal closure. In an attempt to systematize current knowledge on the complex network of interactions and regulation of photosynthesis in plants subjected to water deficits, a meta-analysis has been performed covering > 450 papers published in the last 15 years. This analysis shows the interplay of sugars, reactive oxygen species (ROS), and hormones with photosynthetic responses to drought, involving many metabolic events. However, more significantly it highlights (i) how fragmented and often non-comparable the results are and (ii) how hard it is to relate molecular events to plant physiological status, namely photosynthetic activity, and to stress intensity. Indeed, the same data set usually does not integrate these different levels of analysis. Considering these limitations, it was hard to find a general trend, particularly concerning molecular responses to drought, with the exception of the genes ABI1 and ABI3. These genes, irrespective of the stress type (acute versus chronic) and intensity, show a similar response to water shortage in the two plant systems analysed (Arabidopsis and barley). Both are associated with ABA-mediated metabolic responses to stress and the regulation of stomatal aperture. Under drought, ABI1 transcription is up-regulated while ABI3 is usually down-regulated. Recently ABI3 has been hypothesized to be essential for successful drought recovery.

Pinheiro, C., and M. M. Chaves. "Photosynthesis and drought: can we make metabolic connections from available data?" Journal of Experimental Botany. 62 (2011): 869-882. AbstractWebsite
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Jardak-Jamoussi, Rahma, Olfa Zarrouk, Asma Ben Salem, Nejia Zoghlami, Samiha Mejri, Samia Gandoura, Bilel Khiari, Ahmed Mliki, Manuela Chaves, Abdelwahed Ghorbel, and Carla Pinheiro. "Overexpressing Vitis vinzfera YSK2 dehydrin in tobacco improves plant performance." Agricultural Water Management. 164 (2016): 176-189. AbstractWebsite
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