"Distinctive phytohormonal and metabolic profiles of Arabidopsis thaliana and Eutrema salsugineum under similar soil drying." Planta (2019).

JM, Costa, Marques Silva da J, Pinheiro C, Barón M, Mylona P, Centritto M, Haworth M, and Turkan Oliveira MM. I. Loreto F, Uzilday B. "Opportunities and limitations of crop phenotyping in Southern European countries." Frontiers in Plant Science 10.3389/fpls.2019.01125  (2019): 1125.

"Phellem Cell-Wall Components Are Discriminants of Cork Quality in Quercus suber." Frontiers in Plant Science. 10 (2019): 944.

Zarrouk O., Pinheiro C., Misra Fernández Chaves C. S. V. M. "Fleshy fruit epidermis is a protective barrier under water stress." Water Scarcity and Sustainable Agriculture in Semiarid Environment: Tools, Strategies, and Challenges for Woody Crops. Ed. García-Tejero Durán I. & V. Zuazo. 2018. 507-533.

Pinheiro, C., IC Ribeiro, V. Reisinger, S. Planchon, M. M. Veloso, J. Renaut, L. Eichacker, and C. P. Ricardo. "Salinity effect on germination, seedling growth and cotyledon membrane complexes of a Portuguese salt marsh wild beet ecotype." Theoretical and Experimental Plant Physiology. 30 (2018): 113-127.

Teixeira, RT, AM Fortes, H. Bai, C. Pinheiro, and H. Pereira. "Transcriptional profiling of cork oak phellogenic cells isolated by laser microdissection." Planta. 247 (2018): 317-338.

Ribeiro, IC, C. C. Leclercq, N. Simoes, A. Toureiro, I. Duarte, J. B. Freire, M. M. Chaves, J. Renaut, and C. Pinheiro. "Identification of chickpea seed proteins resistant to simulated in vitro human digestion." Journal of Proteomics. 169 (2017): 143-152.

Chaves, M. M., J. M. Costa, O. Zarrouk, C. Pinheiro, C. M. Lopes, and JS Pereira. "Controlling stomatal aperture in semi-arid regions-The dilemma of saving water or being cool?" Plant Science. 251 (2016): 54-64.

Ribeiro, IC, C. Pinheiro, C. M. Ribeiro, M. M. Veloso, M. C. Simoes-Costa, I. Evaristo, O. S. Paulo, and C. P. Ricardo. "Genetic Diversity and Physiological Performance of Portuguese Wild Beet (Beta vulgaris spp. maritima) from Three Contrasting Habitats." Frontiers in Plant Science. 7 (2016).

Zarrouk, Olfa, Cecilia Brunetti, Ricardo Egipto, Carla Pinheiro, Tania Genebra, Antonella Gori, Carlos M. Lopes, Massimiliano Tattini, and M. Manuela Chaves. "Grape Ripening Is Regulated by Deficit Irrigation/Elevated Temperatures According to Cluster Position in the Canopy." Frontiers in Plant Science. 7 (2016).

Jardak-Jamoussi, Rahma, Donia Abdelwahed, Nejia Zoghlami, Asma Ben Salem, Olfa Zarrouk, Ahmed Mliki, Manuela Chaves, Abdelwahed Ghorbel, and Carla Pinheiro. "Grapevine RD22a constitutive expression in tobacco enhances stomatal adjustment and confers drought tolerance." Theoretical and Experimental Plant Physiology. 28 (2016): 395-413.

Jardak-Jamoussi, Rahma, Olfa Zarrouk, Asma Ben Salem, Nejia Zoghlami, Samiha Mejri, Samia Gandoura, Bilel Khiari, Ahmed Mliki, Manuela Chaves, Abdelwahed Ghorbel, and Carla Pinheiro. "Overexpressing Vitis vinzfera YSK2 dehydrin in tobacco improves plant performance." Agricultural Water Management. 164 (2016): 176-189.

"Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix." (2015).

"The quest for tolerant varieties: the importance of integrating ?omics? techniques to phenotyping." (2015).

Guerra-Guimaraes, Leonor, Rita Tenente, Carla Pinheiro, Ines Chaves, Maria Ceu do Silva, Fernando M. H. Cardoso, Sebastien Planchon, Danielle R. Barros, Jenny Renaut, and Candido P. Ricardo. "Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix." Frontiers in Plant Science. 6 (2015).

Guerra-Guimaraes, Leonor, Rita Tenente, Carla Pinheiro, Ines Chaves, Maria Ceu do Silva, Fernando M. H. Cardoso, Sebastien Planchon, Danielle R. Barros, Jenny Renaut, and Candido P. Ricardo. "Proteomic analysis of apoplastic fluid of Coffea arabica leaves highlights novel biomarkers for resistance against Hemileia vastatrix." Frontiers in Plant Science. 6 (2015).

Zivy, Michel, Stefanie Wienkoop, Jenny Renaut, Carla Pinheiro, Estelle Goulas, and Sebastien Carpentier. "The quest for tolerant varieties: the importance of integrating "omics" techniques to phenotyping." Frontiers in Plant Science. 6 (2015).

Teixeira, RT, AM Fortes, C. Pinheiro, and H. Pereira. "Comparison of good- and bad-quality cork: application of high-throughput sequencing of phellogenic tissue." Journal of Experimental Botany (2014).

Teixeira, RT, AM Fortes, C. Pinheiro, and H. Pereira. "Comparison of good- and bad-quality cork: application of high-throughput sequencing of phellogenic tissue." Journal of Experimental Botany (2014).

Guerra-Guimaraes, Leonor, Ana Vieira, Ines Chaves, Carla Pinheiro, Vagner Queiroz, Jenny Renaut, and Candido P. Ricardo. "Effect of greenhouse conditions on the leaf apoplastic proteome of Coffea arabica plants." Journal of proteomics. 104 (2014): 128-39.

Guerra-Guimaraes, Leonor, Ana Vieira, Ines Chaves, Carla Pinheiro, Vagner Queiroz, Jenny Renaut, and Candido P. Ricardo. "Effect of greenhouse conditions on the leaf apoplastic proteome of Coffea arabica plants." Journal of proteomics. 104 (2014): 128-39.

Fonseca, Catia, Sebastien Planchon, Carla Pinheiro, Jenny Renaut, Candido Pinto Ricardo, Margarida M. Oliveira, and Rita Batista. "Maize IgE binding proteins: each plant a different profile?" Proteome science. 12 (2014): 17.

Fonseca, Catia, Sebastien Planchon, Carla Pinheiro, Jenny Renaut, Candido Pinto Ricardo, M. Margarida Oliveira, and Rita Batista. "Maize IgE binding proteins: each plant a different profile?" Proteome Science. 12 (2014).

Pinheiro, Carla, Leonor Guerra-Guimaraes, Teresa S. David, and Ana Vieira. "Proteomics: State of the art to study Mediterranean woody species under stress." Environmental and Experimental Botany. 103 (2014): 117-127.

Pinheiro, Carla, Leonor Guerra-Guimaraes, Teresa S. David, and Ana Vieira. "Proteomics: State of the art to study Mediterranean woody species under stress." Environmental and Experimental Botany. 103 (2014): 117-127.

Pinheiro, C., K. Sergeant, C. M. Machado, J. Renaut, and C. P. Ricardo. "Two Traditional Maize Inbred Lines of Contrasting Technological Abilities Are Discriminated by the Seed Flour Proteome." Journal of Proteome Research. 12 (2013): 3152-3165.

Pinheiro, C., K. Sergeant, C. M. Machado, J. Renaut, and C. P. Ricardo. "Two Traditional Maize Inbred Lines of Contrasting Technological Abilities Are Discriminated by the Seed Flour Proteome." Journal of Proteome Research. 12 (2013): 3152-3165.

Zarrouk, Olfa, Rita Francisco, Marta Pinto-Marijuan, Ricard Brossa, Raquen Raissa Santos, Carla Pinheiro, Joaquim Miguel Costa, Carlos Lopes, and Maria Manuela Chaves. "Impact of irrigation regime on berry development and flavonoids composition in Aragonez (Syn. Tempranillo) grapevine." Agricultural Water Management. 114 (2012).

Zarrouk, Olfa, Rita Francisco, Marta Pinto-Marijuan, Ricard Brossa, Raquen Raissa Santos, Carla Pinheiro, Joaquim Miguel Costa, Carlos Lopes, and Maria Manuela Chaves. "Impact of irrigation regime on berry development and flavonoids composition in Aragonez (Syn. Tempranillo) grapevine." Agricultural Water Management. 114 (2012).

Alves, M., S. Moes, P. Jenoe, C. Pinheiro, J. Passarinho, and C. P. Ricardo. "The analysis of Lupinus albus root proteome revealed cytoskeleton altered features due to long-term boron deficiency." Journal of Proteomics. 74 (2011): 1351-1363.

Alves, M., S. Moes, P. Jenoe, C. Pinheiro, J. Passarinho, and C. P. Ricardo. "The analysis of Lupinus albus root proteome revealed cytoskeleton altered features due to long-term boron deficiency." Journal of Proteomics. 74 (2011): 1351-1363.

Pinheiro, Carla, Carla Antonio, Maria Fernanda Ortuno, Petre I. Dobrev, Wolfram Hartung, Jane Thomas-Oates, Candido Pinto Ricardo, Radomira Vankova, Manuela M. Chaves, and Julie C. Wilson. "Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses." Journal of Experimental Botany. 62 (2011): 4965-4974.

Pinheiro, Carla, Carla Antonio, Maria Fernanda Ortuno, Petre I. Dobrev, Wolfram Hartung, Jane Thomas-Oates, Candido Pinto Ricardo, Radomira Vankova, Manuela M. Chaves, and Julie C. Wilson. "Initial water deficit effects on Lupinus albus photosynthetic performance, carbon metabolism, and hormonal balance: metabolic reorganization prior to early stress responses." Journal of Experimental Botany. 62 (2011): 4965-4974.

Alves, M., P. Chicau, H. Matias, J. Passarinho, C. Pinheiro, and C. P. Ricardo. "Metabolic analysis revealed altered amino acid profiles in Lupinus albus organs as a result of boron deficiency." Physiologia Plantarum. 142 (2011): 224-232.

Alves, M., P. Chicau, H. Matias, J. Passarinho, C. Pinheiro, and C. P. Ricardo. "Metabolic analysis revealed altered amino acid profiles in Lupinus albus organs as a result of boron deficiency." Physiologia Plantarum. 142 (2011): 224-232.

Pinheiro, C., and M. M. Chaves. "Photosynthesis and drought: can we make metabolic connections from available data?" Journal of Experimental Botany. 62 (2011): 869-882.

Pinheiro, C., and M. M. Chaves. "Photosynthesis and drought: can we make metabolic connections from available data?" Journal of Experimental Botany. 62 (2011): 869-882.

Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278.

Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278.

Pinheiro, C., J. P. Baeta, A. M. Pereira, H. Domingues, and C. P. Ricardo. "Diversity of seed mineral composition of Phaseolus vulgaris L. germplasm." Journal of Food Composition and Analysis. 23 (2010): 319-325.

Pinheiro, C., J. P. Baeta, A. M. Pereira, H. Domingues, and C. P. Ricardo. "Diversity of seed mineral composition of Phaseolus vulgaris L. germplasm." Journal of Food Composition and Analysis. 23 (2010): 319-325.

Felisberto-Rodrigues, C., IC Ribeiro, M. Veloso, C. P. Ricardo, and C. Pinheiro. "Germination under aseptic conditions of different ecotypes of wild beet (Beta vulgaris L. ssp maritima)." Seed Science and Technology. 38 (2010): 517-521.

Felisberto-Rodrigues, C., IC Ribeiro, M. Veloso, C. P. Ricardo, and C. Pinheiro. "Germination under aseptic conditions of different ecotypes of wild beet (Beta vulgaris L. ssp maritima)." Seed Science and Technology. 38 (2010): 517-521.

Chaves, M. M., J. Flexas, and C. Pinheiro. "Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell." Annals of Botany. 103 (2009): 551-560.

Chaves, M. M., J. Flexas, and C. Pinheiro. "Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell." Annals of Botany. 103 (2009): 551-560.

Chaves, I., C. Pinheiro, JAP Paiva, S. Planchon, K. Sergeant, J. Renaut, JA Graca, G. Costa, AV Coelho, and CPP Ricardo. "Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue." PROTEOMICS. 9 (2009): 4154-4175.

Chaves, I., C. Pinheiro, JAP Paiva, S. Planchon, K. Sergeant, J. Renaut, JA Graca, G. Costa, AV Coelho, and CPP Ricardo. "Proteomic evaluation of wound-healing processes in potato (Solanum tuberosum L.) tuber tissue." PROTEOMICS. 9 (2009): 4154-4175.

Sergeant, K., C. Pinheiro, JF Hausman, and al.et. "Taking Advantage of Nonspecific Trypsin Cleavages for the Identification of Seed Storage Proteins in Cereals." JOURNAL OF PROTEOME RESEARCH. 8 (2009): 3182-3190.

Sergeant, K., C. Pinheiro, JF Hausman, and al.et. "Taking Advantage of Nonspecific Trypsin Cleavages for the Identification of Seed Storage Proteins in Cereals." JOURNAL OF PROTEOME RESEARCH. 8 (2009): 3182-3190.

Antonio, Carla, Carla Pinheiro, Maria Manuela Chaves, Candido Pinto Ricardo, Maria Fernanda Ortuno, and Jane Thomas-Oates. "Analysis of carbohydrates in Lupinus albus stems on imposition of water deficit, using porous graphitic carbon liquid chromatography-electrospray ionization mass spectrometry." Journal of Chromatography A. 1187 (2008): 111-118.

Antonio, Carla, Carla Pinheiro, Maria Manuela Chaves, Candido Pinto Ricardo, Maria Fernanda Ortuno, and Jane Thomas-Oates. "Analysis of carbohydrates in Lupinus albus stems on imposition of water deficit, using porous graphitic carbon liquid chromatography-electrospray ionization mass spectrometry." Journal of Chromatography A. 1187 (2008): 111-118.

Pinheiro, C., MHC de Carvalho, D. Bartels, CP Ricarddo, and M. M. Chaves. "Dehydrins in Lupinus albus: pattern of protein accumulation in response to drought." FUNCTIONAL PLANT BIOLOGY. 35 (2008): 85-91.

Pinheiro, C., MHC de Carvalho, D. Bartels, CP Ricarddo, and M. M. Chaves. "Dehydrins in Lupinus albus: pattern of protein accumulation in response to drought." FUNCTIONAL PLANT BIOLOGY. 35 (2008): 85-91.

Pinheiro, C., J. Kehr, and C. P. Ricardo. "Effect of water stress on lupin stem protein analysed by two-dimensional gel electrophoresis." Planta. 221 (2005): 716-728.

Pinheiro, C., J. Kehr, and C. P. Ricardo. "Effect of water stress on lupin stem protein analysed by two-dimensional gel electrophoresis." Planta. 221 (2005): 716-728.

Pinheiro, C., A. P. Rodrigues, IS de Carvalho, M. M. Chaves, and C. P. Ricardo. "Sugar metabolism in developing lupin seeds is affected by a short-term water deficit." Journal of Experimental Botany. 56 (2005): 2705-2712.

Pinheiro, C., A. P. Rodrigues, IS de Carvalho, M. M. Chaves, and C. P. Ricardo. "Sugar metabolism in developing lupin seeds is affected by a short-term water deficit." Journal of Experimental Botany. 56 (2005): 2705-2712.

Vaz, AC, C. Pinheiro, JMN Martins, and al.et. "Cultivar discrimination of Portuguese Lupinus albus by seed protein electrophoresis: the importance of considering "glutelins" and glycoproteins." FIELD CROPS RESEARCH. 87 (2004): 23-34.

Vaz, AC, C. Pinheiro, JMN Martins, and al.et. "Cultivar discrimination of Portuguese Lupinus albus by seed protein electrophoresis: the importance of considering "glutelins" and glycoproteins." FIELD CROPS RESEARCH. 87 (2004): 23-34.

Pinheiro, C., J. A. Passarinho, and C. P. Ricardo. "Effect of drought and rewatering on the metabolism of Lupinus albus organs." Journal of Plant Physiology. 161 (2004): 1203-1210.

Pinheiro, C., J. A. Passarinho, and C. P. Ricardo. "Effect of drought and rewatering on the metabolism of Lupinus albus organs." Journal of Plant Physiology. 161 (2004): 1203-1210.

Price, NJ, C. Pinheiro, C. M. Soares, DA Ashford, C. P. Ricardo, and PA Jackson. "A biochemical and molecular characterization of LEP1, an extensin peroxidase from lupin." Journal of Biological Chemistry. 278 (2003): 41389-41399.

Price, NJ, C. Pinheiro, C. M. Soares, DA Ashford, C. P. Ricardo, and PA Jackson. "A biochemical and molecular characterization of LEP1, an extensin peroxidase from lupin." Journal of Biological Chemistry. 278 (2003): 41389-41399.

Chaves, M. M., JS Pereira, J. Maroco, ML Rodrigues, CPP Ricardo, ML Osorio, I. Carvalho, T. Faria, and C. Pinheiro. "How plants cope with water stress in the field. Photosynthesis and growth." Annals of Botany. 89 (2002): 907-916.

Chaves, M. M., JS Pereira, J. Maroco, ML Rodrigues, CPP Ricardo, ML Osorio, I. Carvalho, T. Faria, and C. Pinheiro. "How plants cope with water stress in the field. Photosynthesis and growth." Annals of Botany. 89 (2002): 907-916.

Pinheiro, C., M. M. Chaves, and C. P. Ricardo. "Alterations in carbon and nitrogen metabolism induced by water deficit in the stems and leaves of Lupinus albus L." Journal of Experimental Botany. 52 (2001): 1063-1070.

Pinheiro, C., M. M. Chaves, and C. P. Ricardo. "Alterations in carbon and nitrogen metabolism induced by water deficit in the stems and leaves of Lupinus albus L." Journal of Experimental Botany. 52 (2001): 1063-1070.

Regalado, AP, C. Pinheiro, S. Vidal, I. Chaves, CPP Ricardo, and C. Rodrigues-Pousada. "The Lupinus albus class-III chitinase gene, IF3, is constitutively expressed in vegetative organs and developing seeds." Planta. 210 (2000): 543-550.

Regalado, AP, C. Pinheiro, S. Vidal, I. Chaves, CPP Ricardo, and C. Rodrigues-Pousada. "The Lupinus albus class-III chitinase gene, IF3, is constitutively expressed in vegetative organs and developing seeds." Planta. 210 (2000): 543-550.