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Journal Article
Marques, J. P., P. Indelicato, F. Parente, J. M. Sampaio, and J. P. Santos. "Ground-state Landé g factors for selected ions along the boron isoelectronic sequence." Physical Review A 94 (2016): 042504. AbstractWebsite

Land\'e $g$ factors for the fine-structure $1{s}^{2}2{s}^{2}2p\phantom{\rule{0.16em}{0ex}}^{2}P_{1/2}$ and $^{2}P_{3/2}$ levels in the boron isoelectronic sequence for selected $Z$ values have been calculated using the multiconfiguration Dirac-Fock method with both quantum-electrodynamic and electronic correlation corrections included. All-order Breit and vacuum polarization corrections were included in the calculation, with a fully optimized active set wave function. The results are compared with the available theoretical data, showing a very good agreement.

Santos, J. P. "HCI 2018." X-Ray Spectrometry (2020). AbstractWebsite
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Kasthurirangan, S., J. K. Saha, A. N. Agnihotri, A. Banerjee, A. Kumar, D. Misra, J. P. Santos, A. M. Costa, P. Indelicato, T. K. Mukherjee, and L. C. Tribedi. "High-resolution x-ray spectra from highly charged Si, S and Cl ions showing evidence of fluorescence active resonant states." Journal of Physics: Conference Series 488 (2014): 132027-2. AbstractWebsite

We have measured the x-ray spectra from highly charged Si, S and Cl ions in collisions with thin foils using a high-resolution x-ray spectrometer. The observed lines have been assigned to various transitions in H-, He- and Li-like ions. For proper identification of line positions, the theoretical calculations have been carried out using a state-of-the-art MCDF code including QED effects, with which the experimental data is in excellent agreement. We have also observed, for the first time, x-rays arising out of the decay of long-lived resonant states in the He-like ions of each species. Details will be presented.

Diepold, Marc, Luis M. P. Fernandes, Jorge Machado, Pedro Amaro, Marwan Abdou-Ahmed, Fernando D. Amaro, Aldo Antognini, François Biraben, Tzu-Ling Chen, Daniel S. Covita, Andreas J. Dax, Beatrice Franke, Sandrine Galtier, Andrea L. Gouvea, Johannes Götzfried, Thomas Graf, Theodor W. Hänsch, Malte Hildebrandt, Paul Indelicato, Lucile Julien, Klaus Kirch, Andreas Knecht, Franz Kottmann, Julian J. Krauth, Yi-Wei Liu, Cristina M. B. Monteiro, Françoise Mulhauser, Boris Naar, Tobias Nebel, François Nez, Jose Paulo Santos, Joaquim M. F. dos Santos, Karsten Schuhmann, Csilla I. Szabo, David Taqqu, João F. C. A. Veloso, Andreas Voss, Birgit Weichelt, and Randolf Pohl. "Improved x-ray detection and particle identification with avalanche photodiodes." Review of Scientific Instruments 86 (2015): 053102-7. AbstractWebsite
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Martins, M. C., A. M. Costa, J. P. Santos, P. Indelicato, and F. Parente. "Interpretation of X-ray spectra emitted by Ar ions in an ECR ion source." Journal of Physics B: Atomic and Molecular Physics 34 (2001): 533-543. AbstractWebsite

We examine the most important processes leading to the creation of excited states from the ground configurations of Ar8+ to Ar16+ ions in an electron-cyclotron resonance ion source, which lead to the emission of K x-ray lines. Theoretical values for inner-shell excitation and ionization cross sections, including double KL ionization, transition probabilities and energies for the de-excitation processes, are calculated in the framework of the multi-configuration Dirac-Fock method. With reasonable assumptions about the electron energy distribution, a theoretical K x-ray spectrum is obtained, which reproduces very closely a recent experimental result.

Kup Aylikci, N., J. M. Sampaio, A. Kahoul, V. Aylikci, İ. H. Karahan, M. Guerra, J. P. Santos, J. P. Marques, and E. Tirasoglu. "The investigation of K-shell fluorescence parameters of Zn-Fe alloys with different grain size and microstrain values." X-Ray Spectrometry 406 (2017): 1481-10. AbstractWebsite

It is known that zinc alloys with iron group metals have better corrosion resistance than pure zinc. Owing to the corrosion resistance of these alloys, Zn–Fe coatings are widely used in automotive industry...

Szabo, C. I., P. Amaro, M. Guerra, J. P. Santos, A. Gumberidze, J. Attard, and P. Indelicato. "Ion temperature and x-ray line width measurements of highly charged argon ions in an ECR ion source." Physica Scripta T156 (2013): 014077. AbstractWebsite
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Szabo, C. I., P. Amaro, M. Guerra, J. P. Santos, A. Gumberidze, J. Attard, and P. Indelicato. "Ion temperature and x-ray line width measurements of highly charged argon ions in an ECR ion source." Physica Scripta T156 (2013): 014077. AbstractWebsite
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Santos, J. P., and F. Parente. "Ionisation of phosphorus, arsenic, antimony, and bismuth by electron impact." The European Physical Journal D - Atomic, Molecular, Optical and Plasma Physics 47 (2008): 339-350. AbstractWebsite
Abstract.  Total ionization cross sections of neutral phosphorus, arsenic, antimony, and bismuth atoms by electron impact are reported and compared to the only available experimental results by Freund et al. [Phys. Rev. A 41, 3575 (1990)]. These calculations take into account the possibilities that some target atoms used in the experiments were in metastable states close to the ground state, the excitation-autoionization of nsnp4 excited states may be substantial, and the ions produced in experiments may be in excited, low-lying metastable states. The cross sections for direct ionization calculations are based on the BEB model by Kim and Rudd [Phys. Rev. A 50, 3954 (1994)]. Plane-wave Born cross sections scaled by the method developed by Kim [Phys. Rev. A 64, 3954 032713 (2001)] are used to determine the contributions from excitation-autoionization. The combination of the BEB model and the scaled Born cross sections is in agreement with the experimental data by Freund et al. These theoretical data are useful to experimentalists and can be used to complete data tables needed for plasma or astrophysical studies.
Santos, J. P., and F. Parente. "Ionisation of phosphorus, arsenic, antimony, and bismuth by electron impact." The European Physical Journal D - Atomic, Molecular, Optical and Plasma Physics 47 (2008): 339-350. AbstractWebsite

Abstract.  Total ionization cross sections of neutral phosphorus, arsenic, antimony, and bismuth atoms by electron impact are reported and compared to the only available experimental results by Freund et al. [Phys. Rev. A 41, 3575 (1990)]. These calculations take into account the possibilities that some target atoms used in the experiments were in metastable states close to the ground state, the excitation-autoionization of nsnp4 excited states may be substantial, and the ions produced in experiments may be in excited, low-lying metastable states. The cross sections for direct ionization calculations are based on the BEB model by Kim and Rudd [Phys. Rev. A 50, 3954 (1994)]. Plane-wave Born cross sections scaled by the method developed by Kim [Phys. Rev. A 64, 3954 032713 (2001)] are used to determine the contributions from excitation-autoionization. The combination of the BEB model and the scaled Born cross sections is in agreement with the experimental data by Freund et al. These theoretical data are useful to experimentalists and can be used to complete data tables needed for plasma or astrophysical studies.

Kim, Y. K., and P. M. Stone. "Ionization of boron, aluminum, gallium, and indium by electron impact." Physical Review A 64 (2001): 052707. AbstractWebsite

Measurements of electron impact ionization of neutral Al, Ga, and In show large cross sections compared to other elements in the same rows of the periodic table. Semiempirical and classical calculations of direct ionization cross sections are all substantially smaller. Calculations by McGuire [Phys. Rev. A 26, 125 (1982)] for aluminum that include excitations to autoionizing 3s3p2 doublet levels are 2.5 times higher than experiment at the peak. We report the direct ionization cross sections based on the binary-encounter-Bethe model of Kim and Rudd [Phys. Rev. A 50, 3954 (1994)], which is an ab initio theory. We add the autoionization contribution using scaled plane-wave Born cross sections as recently developed by Kim [Phys. Rev. A 64, 032713 (2001)] for excitations to the first set of autoionizing levels. Dirac-Fock wave functions are used for the atomic structure. Our results are in excellent agreement with experimental values and support substantial contributions from excitation-autoionization to the total ionization cross sections for these elements. We also compare the total ionization cross section of boron to available theories, though no experimental data are available.

Santos, J. P., A. M. Costa, M. C. Martins, P. Indelicato, and F. Parente. "K X-Ray Energies and Transition Probabilities for He-, Li- and Be-like Praseodymium ions." Journal of Physics: Conference Series Accepted (2011).
Santos, J. P., A. M. Costa, M. C. Martins, P. Indelicato, and F. Parente. "K X-Ray Energies and Transition Probabilities for He-, Li- and Be-like Praseodymium ions." J. Phys.: Conf. Ser. 388 (2012): 152018. AbstractWebsite

Theoretical transition energies and probabilities for He-, Li and Be-like Praseodymium ions are calcu- lated in the framework of the multi-configuration Dirac-Fock method (MCDF), including QED corrections. These calculated values are compared to recent experimental data obtained in the Livermore SuperEBIT electron beam ion trap facility [1].

Santos, J. P., A. M. Costa, M. C. Martins, P. Indelicato, and F. Parente. "K X-Ray Energies and Transition Probabilities for He-, Li- and Be-like Praseodymium ions." Journal of Physics: Conference Series 388 (2012): 152018. AbstractWebsite

Theoretical transition energies and probabilities for He-, Li and Be-like Praseodymium ions are calcu- lated in the framework of the multi-configuration Dirac-Fock method (MCDF), including QED corrections. These calculated values are compared to recent experimental data obtained in the Livermore SuperEBIT electron beam ion trap facility [1].

Marques, J. P., M. Guerra, F. Parente, J. P. Santos, P. Indelicato, and J. M. Sampaio. "K-shell width, fluorescence yield, and Kβ/ Kαintensity ratio calculation for Fe in the Dirac-Fock approach." Journal of Physics: Conference Series 635 (2015): 092094-2. AbstractWebsite
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Ito, Y., T. Tochio, H. Ohashi, M. Yamashita, S. Fukushima, M. Polasik, K. Słabkowska, Ł. Syrocki, E. Szymańska, J. Rzadkiewicz, P. Indelicato, J. P. Marques, M. C. Martins, J. P. Santos, and F. Parente. "Kα1,2x-ray linewidths, asymmetry indices, and [KM]shake probabilities in elements Ca to Ge and comparison with theory for Ca, Ti, and Ge." Physical Review A 94 (2016): 042506-11. AbstractWebsite
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Pohl, R., and CREMA Collaboration. "Laser Spectroscopy of Muonic Atoms and Ions." JPS Conf. Proc. (2016): 1-12. AbstractWebsite
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Guimarães, D., M. L. Carvalho, M. Becker, A. von Bohlen, V. Geraldes, I. Rocha, and J. P. Santos. "Lead concentration in feces and urine of exposed rats by X-ray Fluorescence and Electrothermal Atomic Absorption Spectrometry." X-Ray Spectrometry In press (2011). Abstract
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Guimarães, D., M. L. Carvalho, M. Becker, A. von Bohlen, V. Geraldes, I. Rocha, and J. P. Santos. "Lead concentration in feces and urine of exposed rats by x-ray fluorescence and electrothermal atomic absorption spectrometry." X-Ray Spectrom. 41 (2012): 80. Abstract

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Guimarães, D., M. L. Carvalho, M. Becker, A. von Bohlen, V. Geraldes, I. Rocha, and J. P. Santos. "Lead concentration in feces and urine of exposed rats by x-ray fluorescence and electrothermal atomic absorption spectrometry." X-Ray Spectrometry 41 (2012): 80. AbstractWebsite

Measurements made in feces and urine of Wistar rats exposed to lead acetate (n = 20) in drinking water since the fetal period were compared with those obtained from a control group (n = 20) in order to assess the age influence on Pb excretion. The measurements were made in different collections of rats aging between 1 and 11 months. To determine the Pb content of the samples, total reflection X-ray fluorescence (TXRF) and electrothermal atomic absorption spectrometry (ETAAS) were used for the urine samples and energy dispersive X-ray fluorescence (EDXRF) was used for the feces.The results show high concentrations of Pb being eliminated from the organism by urine and feces in contaminated rats. Values vary from (600`140)mgl1 to (5 460`115)mgl1 in urine and from (4 500`300)mgg1 to (11 400`3 300)mgg1 in dry feces. The control rats show, in general, low lead concentrations or below detection limits. The fecal/urinary ratio was studied. It was shown to be about three to four orders of magnitude and positively correlated with time. It was verified in feces and urine that excretion decreases with the animal age and that this decrease is made by different levels of excretion. The excretions of Pb in urine and in feces are positively correlated.A good agreement was found between the results obtained with TXRF and ETAAS for urine samples. This work also stresses the suitability of these techniques in the study of Pb intoxication.

Guimarães, Diana, Maria Luisa Carvalho, Vera Geraldes, Isabel Rocha, Luís Cerqueira Alves, and Jose Paulo Santos. "Lead in liver and kidney of exposed rats: Aging accumulation study." J. Trace Elem. Med Biol. 26 (2012): 285. AbstractWebsite

The concentration of lead in liver and kidneys of Wistar rats, fed with lead since fetal period in relation to their age and to a control group, was determined. A group of rats was exposed to lead acetate (n=30) in drinking water and the other group was exposed to normal water (n=20). Samples were collected from rats aging between 1 and 11 months and were analyzed by Energy Dispersive X-ray Fluorescence (EDXRF) without any chemical preparation. The EDXRF results were assessed by the PIXE (Proton Induced X-ray Emission) technique. The formaldehyde used to preserve the samples was also analyzed by ETAAS (Electro-Thermal Atomic Absorption Spectrometry) in order to verify if there was any loss of lead from the samples to the formaldehyde. We found that the loss was not significant (<2%). Concerning the mean values of the lead concentration measured in the contaminated soft tissues, in liver they range from 6 to 22μgg(-1), and in kidneys from 44 to 79μgg(-1). The control rats show, in general, values below the EDXRF detection limit (2μgg(-1)). The ratio kidney/liver ranges from 2 to 10 and is strongly positively correlated with the age of the animals. A Spearman correlation matrix to investigate the correlation between elemental concentrations and the dependence of these concentrations with age showed that there is a strong positive correlation with age for lead in the liver but not in the kidney. The correlation matrix showed also that the concentration of lead in these two soft tissues is not correlated. The lead accumulation in liver is made by different plateaus that strongly decrease with age. It was verified the existence of two levels of accumulation in kidney, not very highlighted, which might be indicative of a maximum accumulation level for lead in kidney.

Guimarães, Diana, Maria Luisa Carvalho, Vera Geraldes, Isabel Rocha, Luís Cerqueira Alves, and Jose Paulo Santos. "Lead in liver and kidney of exposed rats: Aging accumulation study." Journal of Trace Elements in Medicine and Biology 26 (2012): 285. AbstractWebsite

The concentration of lead in liver and kidneys of Wistar rats, fed with lead since fetal period in relation to their age and to a control group, was determined. A group of rats was exposed to lead acetate (n=30) in drinking water and the other group was exposed to normal water (n=20). Samples were collected from rats aging between 1 and 11 months and were analyzed by Energy Dispersive X-ray Fluorescence (EDXRF) without any chemical preparation. The EDXRF results were assessed by the PIXE (Proton Induced X-ray Emission) technique. The formaldehyde used to preserve the samples was also analyzed by ETAAS (Electro-Thermal Atomic Absorption Spectrometry) in order to verify if there was any loss of lead from the samples to the formaldehyde. We found that the loss was not significant (<2%). Concerning the mean values of the lead concentration measured in the contaminated soft tissues, in liver they range from 6 to 22μgg(-1), and in kidneys from 44 to 79μgg(-1). The control rats show, in general, values below the EDXRF detection limit (2μgg(-1)). The ratio kidney/liver ranges from 2 to 10 and is strongly positively correlated with the age of the animals. A Spearman correlation matrix to investigate the correlation between elemental concentrations and the dependence of these concentrations with age showed that there is a strong positive correlation with age for lead in the liver but not in the kidney. The correlation matrix showed also that the concentration of lead in these two soft tissues is not correlated. The lead accumulation in liver is made by different plateaus that strongly decrease with age. It was verified the existence of two levels of accumulation in kidney, not very highlighted, which might be indicative of a maximum accumulation level for lead in kidney.

Cardoso, P., T. C. Mateus, G. Velu, R. P. Singh, J. P. Santos, M. L. Carvalho, V. M. Louren{\c c}o, F. Lidon, F. Reboredo, and M. Guerra. "Localization and distribution of Zn and Fe in grains of biofortified bread wheat lines through micro- and triaxial-X-ray fluorescence spectrometry." Spectrochim. Acta Part B 141 (2018): 70-79. Abstract

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Krauth, Julian J., Karsten Schuhmann, Marwan Abdou Ahmed, Fernando D. Amaro, Pedro Amaro, François Biraben, Tzu-Ling Chen, Daniel S. Covita, Andreas J. Dax, Marc Diepold, Luis M. P. Fernandes, Beatrice Franke, Sandrine Galtier, Andrea L. Gouvea, Johannes Götzfried, Thomas Graf, Theodor W. Hänsch, Jens Hartmann, Malte Hildebrandt, Paul Indelicato, Lucile Julien, Klaus Kirch, Andreas Knecht, Yi-Wei Liu, Jorge Machado, Cristina M. B. Monteiro, Françoise Mulhauser, Boris Naar, Tobias Nebel, François Nez, Joaquim M. F. dos Santos, José Paulo Santos, Csilla I. Szabo, David Taqqu, João F. C. A. Veloso, Jan Vogelsang, Andreas Voss, Birgit Weichelt, Randolf Pohl, Aldo Antognini, and Franz Kottmann. "Measuring the $\upalpha$-particle charge radius with muonic helium-4 ions." Nature 589 (2021): 527-531. AbstractWebsite
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Reboredo, {Fernando Henrique}, A. Barbosa, {Maria Manuela} Silva, {Maria Luisa} Carvalho, {José Paulo} Santos, {Maria Fernanda} Pessoa, Fernando Lidon, {José C. } Ramalho, and Mauro Guerra. "Mineral Content of Food Supplements of Plant Origin, by Energy Dispersive X-ray Fluorescence: A Risk Assessment." Exposure and Health 12 (2020): 917-927. Abstract

The aim of this study is to evaluate the elemental composition of six food supplements of plant origin, commonly sold in the Portuguese market, by energy dispersive X-ray fluorescence. The presence of arsenic in all the Maca, Ashwagandha, Camu-Camu and Hemp protein samples (except the generic form) is a reason of concern due to the long-term effects of As mainly in its inorganic form. Thus, great caution must be taken on some food supplements, particularly the cases of Moringa from Egypt and Yellow/Xpresso Maca, whose inorganic As concentrations are in line with the upper bound concentration for the 95th dietary exposure according to the European Food Safety Authority which is 0.64 μg/kg bw/day. In what regards Hemp protein, if the supplier’s daily intake recommendation (30 g) is followed, values as high as 1.75 μg/kg bw/day of inorganic As will be consumed, which are dangerously above the upper bound. In this case this specific supplement lot should be removed from the market. Also the consumption of Hemp protein leads to a daily intake of Mn above the Daily Reference Intake (DRI) and Adequate Intakes (AIs) for adults. The contamination of Goji berries by Pb is a reason for concern—organic berries contained 11.3 μg/g while berries derived from conventional agriculture 11.6 μg/g, leading to daily intake doses of 315.3 μg and 324.8 μg, respectively, if the recommended daily intake of 28 g is followed. Our findings point out to an inadequacy of the recommended intakes by the supplier vis a vis the concentrations observed, greatly increasing the risk for public health.