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Kasthurirangan, S., J. K. Saha, A. N. Agnihotri, S. Bhattacharyya, D. Misra, A. Kumar, P. K. Mukherjee, J. P. Santos, A. M. Costa, P. Indelicato, T. K. Mukherjee, and L. C. Tribedi. "Observation of 2p3 d (1Po)→ 1s3d (1De) Radiative Transition in He-like Si, S, and Cl Ions." Physical Review Letters 111 (2013): 243201. AbstractWebsite
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Kasthurirangan, S., J. K. Saha, A. N. Agnihotri, S. Bhattacharyya, D. Misra, A. Kumar, P. K. Mukherjee, J. P. Santos, A. M. Costa, P. Indelicato, T. K. Mukherjee, and L. C. Tribedi. "Observation of 2p3 d (1Po)→ 1s3d (1De) Radiative Transition in He-like Si, S, and Cl Ions." Physical Review Letters 111 (2013): 243201. AbstractWebsite
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Togawa, M., S. Kühn, C. Shah, P. Amaro, R. Steinbrügge, J. Stierhof, N. Hell, M. Rosner, K. Fujii, M. Bissinger, R. Ballhausen, M. Hoesch, J. Seltmann, S. Park, F. Grilo, F. S. Porter, J. P. Santos, M. Chung, T. Stöhlker, J. Wilms, T. Pfeifer, G. V. Brown, M. A. Leutenegger, S. Bernitt, and Crespo J. R. López-Urrutia. "Observation of strong two-electron–one-photon transitions in few-electron ions." Physical Review A 102 (2020). AbstractWebsite
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Santos, J. P., M. C. Martins, A. M. Costa, J. P. Marques, P. Indelicato, and F. Parente. "Production and decay of chlorine ion excited species in an electron cyclotron resonance ion source plasma." Physica Scripta T144 (2011): 014005. AbstractWebsite

The most important processes for the creation of chlorine ion excited states from the ground configurations of Cl 10+ to Cl 15+ ions in an electron cyclotron resonance ion source, leading to the emission of K x-ray lines, were studied. Theoretical values for inner-shell excitation and ionization cross-sections, including double KL and triple KLL ionization, transition probabilities and energies for the de-excitation processes, were calculated in the framework of the multi-configuration Dirac–Fock method. With reasonable assumptions about the electron energy distribution, a theoretical Kα x-ray spectrum was obtained, which was then compared with recent experimental data.

Santos, J. P., M. C. Martins, A. M. Costa, J. P. Marques, P. Indelicato, and F. Parente. "Production and decay of chlorine ion excited species in an electron cyclotron resonance ion source plasma." Physica Scripta T144 (2011): 014005. AbstractWebsite

The most important processes for the creation of chlorine ion excited states from the ground configurations of Cl 10+ to Cl 15+ ions in an electron cyclotron resonance ion source, leading to the emission of K x-ray lines, were studied. Theoretical values for inner-shell excitation and ionization cross-sections, including double KL and triple KLL ionization, transition probabilities and energies for the de-excitation processes, were calculated in the framework of the multi-configuration Dirac–Fock method. With reasonable assumptions about the electron energy distribution, a theoretical Kα x-ray spectrum was obtained, which was then compared with recent experimental data.

Martins, M. C., J. P. Marques, A. M. Costa, J. P. Santos, F. Parente, S. Schlesser, Le E. - O. Bigot, and P. Indelicato. "Production and decay of sulfur excited species in an electron-cyclotron-resonance ion-source plasma." Physical Review A (Atomic, Molecular, and Optical Physics) 80 (2009): 032501. AbstractWebsite
The most important processes for the creation of S12+ to S14+ ions excited states from the ground configurations of S9+ to S14+ ions in an electron cyclotron resonance ion source, leading to the emission of K x-ray lines, are studied. Theoretical values for inner-shell excitation and ionization cross sections, including double-KL and triple-KLL ionizations, transition probabilities and energies for the de-excitation processes, are calculated in the framework of the multiconfiguration Dirac-Fock method. With reasonable assumptions about the electron energy distribution, a theoretical Kalpha x-ray spectrum is obtained, which is compared to recent experimental data.
Martins, M. C., J. P. Marques, A. M. Costa, J. P. Santos, F. Parente, S. Schlesser, E. O. Le Bigot, and P. Indelicato. "Production and decay of sulfur excited species in an electron-cyclotron-resonance ion-source plasma." Physical Review A 80 (2009): 032501. AbstractWebsite

The most important processes for the creation of S12+ to S14+ ions excited states from the ground configurations of S9+ to S14+ ions in an electron cyclotron resonance ion source, leading to the emission of K x-ray lines, are studied. Theoretical values for inner-shell excitation and ionization cross sections, including double-KL and triple-KLL ionizations, transition probabilities and energies for the de-excitation processes, are calculated in the framework of the multiconfiguration Dirac-Fock method. With reasonable assumptions about the electron energy distribution, a theoretical Kalpha x-ray spectrum is obtained, which is compared to recent experimental data.

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Guimarães, D., A. A. Dias, M. Carvalho, M. L. Carvalho, J. P. Santos, F. R. Henriques, F. Curate, and S. Pessanha. "Quantitative determinations and imaging in different structures of buried human bones from the XVIII-XIXth centuries by energy dispersive X-ray fluorescence – Postmortem evaluation." Talanta 155 (2016): 107-115. AbstractWebsite

Talanta, 155 + (2016) 107-115. doi:10.1016/j.talanta.2016.04.028

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Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of Kα hypersatellite line energies and transition probabilities for selected atoms with 12<=Z<=80." Journal of Physics B: Atomic, Molecular and Optical Physics 40 (2007): 57. AbstractWebsite
The transition probabilities of Kα hypersatellite lines and energy shifts with respect to the corresponding diagram lines are computed using the Dirac–Fock model for several values of atomic number Z throughout the periodic table. The influence of the Breit interaction on the Kα1h/Kα2h line intensity ratio, Kα1h and Kα2h line energy shifts and Kα1h to Kα2h line energy splitting is evaluated. Double-K shell hole threshold values for selected elements with 23 ⩽Z⩽ 30, calculated within the same approach, are compared with available experimental results.
Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of K&alpha; hypersatellite line energies and transition probabilities for selected atoms with 12 ≤ Z ≤ 80." Journal of Physics B: Atomic, Molecular and Optical Physics 40 (2007): 57. AbstractWebsite

The transition probabilities of K&alpha; hypersatellite lines and energy shifts with respect to the corresponding diagram lines are computed using the Dirac&ndash;Fock model for several values of atomic number <I>Z</I> throughout the periodic table. The influence of the Breit interaction on the K&alpha;<SUB>1</SUB><SUP>h</SUP>/K&alpha;<SUB>2</SUB><SUP>h</SUP> line intensity ratio, K&alpha;<SUB>1</SUB><SUP>h</SUP> and K&alpha;<SUB>2</SUB><SUP>h</SUP> line energy shifts and K&alpha;<SUB>1</SUB><SUP>h</SUP> to K&alpha;<SUB>2</SUB><SUP>h</SUP> line energy splitting is evaluated. Double-K shell hole threshold values for selected elements with 23 &les;<I>Z</I>&les; 30, calculated within the same approach, are compared with available experimental results.

Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of Kβ hypersatellite energies and transition probabilities for selected atoms with 13 ≤ Z ≤ 80." Journal of Physics B: Atomic and Molecular Physics 39 (2006): 2355-2366. AbstractWebsite

Energies and transition probabilities of Kβ hypersatellite lines are computed using the Dirac–Fock model for several values of Z throughout the periodic table. The influence of the Breit interaction on the energy shifts from the corresponding diagram lines and on the Kβh1/Kβh3 intensity ratio is evaluated. The widths of the double-K hole levels are calculated for Al and Sc. The results are compared to experiment and to other theoretical calculations.Al_Sc_Mg_Ti

Costa, A. M., M. C. Martins, J. P. Santos, P. Indelicato, and F. Parente. "Relativistic calculation of Kβ hypersatellite energies and transition probabilities for selected atoms with 13<=Z<=80." Journal of Physics B: Atomic and Molecular Physics 39 (2006): 2355-2366. AbstractWebsite
Energies and transition probabilities of Kβ hypersatellite lines are computed using the Dirac–Fock model for several values of Z throughout the periodic table. The influence of the Breit interaction on the energy shifts from the corresponding diagram lines and on the Kβh1/Kβh3 intensity ratio is evaluated. The widths of the double-K hole levels are calculated for Al and Sc. The results are compared to experiment and to other theoretical calculations.
Martins, M. C., A. M. Costa, J. P. Santos, F. Parente, and P. Indelicato. "Relativistic calculation of two-electron one-photon and hypersatellite transition energies for 12<=Z<=30 elements." Journal of Physics B: Atomic and Molecular Physics 37 (2004): 3785-3795. AbstractWebsite

Energies of two-electron one-photon transitions from initial double K-hole states were computed using the Dirac–Fock model. The transition energies of competing processes, the Ka hypersatellites, were also computed. The results are compared with experiment and to other theoretical calculations.

Indelicato, P., E. Lindroth, T. Beier, J. Bieron, A. M. Costa, I. Lindgren, J. P. Marques, A. M. Martenson-Pendrill, M. C. Martins, M. A. Ourdane, F. Parente, P. Patté, G. C. Rodrigues, S. Salomonson, and J. P. Santos. "Relativistic Calculations for Trapped Ions." Hyperfine Interactions 132 (2001): 347-361. AbstractWebsite

We present recent results in the field of total binding energy calculations, Land&shchcy; factors, quantum electrodynamics corrections and lifetime that are of interest for ion traps and ion sources. We describe in detail MCDF and RMBPT calculation of ionic binding energies, which are needed for the determination of atomic masses from highly charged ion measurements. We also show new results concerning Land&shchcy; factor in 3-electron ions. Finally we describe how relativistic calculations can help understand the physics of heavy ion production ion sources.

Santos, J., A. Costa, C. Madruga, F. Parente, and P. Indelicato. "Relativistic transition wavelenghts and probabilities for spectral lines of Ne II." The European Physical Journal D - Atomic, Molecular, Optical and Plasma Physics 63 (2011): 89-96. AbstractWebsite

Transition wavelengths and probabilities for several 2 p 4 3 p -2 p 4 3 s and 2 p 4 3 d -2 p 4 3 p lines in fluorine-like neon ion (NeII) have been calculated within the multiconfiguration Dirac-Fock (MCDF) method with quantum electrodynamics (QED) corrections. The results are compared with all existing experimental and theoretical data.

Santos, J. P., A. Costa, C. Madruga, F. Parente, and P. Indelicato. "Relativistic transition wavelenghts and probabilities for spectral lines of Ne II." The European Physical Journal D 63 (2011): 89-96. AbstractWebsite

Transition wavelengths and probabilities for several 2 p 4 3 p -2 p 4 3 s and 2 p 4 3 d -2 p 4 3 p lines in fluorine-like neon ion (NeII) have been calculated within the multiconfiguration Dirac-Fock (MCDF) method with quantum electrodynamics (QED) corrections. The results are compared with all existing experimental and theoretical data.

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Guerra, M., S. C. Pé-Leve Santos, A. M. E. Barroso, C. P. S. Fonseca, M. Eloy Cruz, P. Amaro, J. L. Figueirinhas, M. L. Carvalho, and J. P. Santos. "Spatially resolved determination of toxic trace elements in plants of Panasqueira mining region using micro X-ray fluorescence." Microscopy and Microanalysis 21 (2015): 54-55. AbstractWebsite
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Guimarães, D., M. L. Carvalho, V. Geraldes, I. Rocha, and J. P. Santos. "Study of lead accumulation in bones of Wistar rats by X-ray fluorescence analysis: aging effect." Metallomics In Press (2011): DOI: 10.1039/c1mt00149c. AbstractWebsite

The accumulation of lead in several bones of Wistar rats with time was determined and comparedQ3 for the different types of bones. Two groups were studied: a control group (n = 20), not exposedto lead and a contaminated group (n = 30), exposed to lead from birth, first indirectly throughmother’s milk, and then directly through a diet containing lead acetate in drinking water (0.2%).Rats age ranged from 1 to 11 months, with approximately 1 month intervals and each of thecollections had 3 contaminated rats and 2 control rats. Iliac, femur, tibia–fibula and skull havebeen analysed by energy dispersive X-ray fluorescence technique (EDXRF). Samples offormaldehyde used to preserve the bone tissues were also analysed by Electrothermal AtomicAbsorption (ETAAS), showing that there was no significant loss of lead from the tissue to thepreservative. The bones mean lead concentration of exposed rats range from 100 to 300 mg g 1while control rats never exceeded 10 mg g 1. Mean bone lead concentrations were compared andthe concentrations were higher in iliac, femur and tibia–fibula and after that skull. However, ofall the concentrations in the different collections, only those in the skull were statisticallyQ4 significantly different (p o 0.05) from the other types of bones. Analysis of a radar chart alsoallowed us to say that these differences tend to diminish with age. The Spearman correlation testapplied to mean lead concentrations showed strong and very strong positive correlations betweenall different types of bones. This test also showed that mean lead concentrations in bones arenegatively correlated with the age of the animals. This correlation is strong in iliac and femur andvery strong in tibia–fibula and skull. It was also shown that the decrease of lead accumulationwith age is made by three plateaus of accumulation,

Guimarães, D., M. L. Carvalho, V. Geraldes, I. Rocha, and J. P. Santos. "Study of lead accumulation in bones of Wistar rats by X-ray fluorescence analysis: aging effect." Metallomics 4 (2012): 66. AbstractWebsite

The accumulation of lead in several bones of Wistar rats with time was determined and compared Q3 for the different types of bones. Two groups were studied: a control group (n = 20), not exposed to lead and a contaminated group (n = 30), exposed to lead from birth, first indirectly through
mother’s milk, and then directly through a diet containing lead acetate in drinking water (0.2%). Rats age ranged from 1 to 11 months, with approximately 1 month intervals and each of the collections had 3 contaminated rats and 2 control rats. Iliac, femur, tibia–fibula and skull have been analysed by energy dispersive X-ray fluorescence technique (EDXRF). Samples of formaldehyde used to preserve the bone tissues were also analysed by Electrothermal Atomic Absorption (ETAAS), showing that there was no significant loss of lead from the tissue to the preservative. The bones mean lead concentration of exposed rats range from 100 to 300 mg g 1 while control rats never exceeded 10 mg g 1. Mean bone lead concentrations were compared and
the concentrations were higher in iliac, femur and tibia–fibula and after that skull. However, of all the concentrations in the different collections, only those in the skull were statistically Q4 significantly different (p o 0.05) from the other types of bones. Analysis of a radar chart also allowed us to say that these differences tend to diminish with age. The Spearman correlation test applied to mean lead concentrations showed strong and very strong positive correlations between
all different types of bones. This test also showed that mean lead concentrations in bones are negatively correlated with the age of the animals. This correlation is strong in iliac and femur and very strong in tibia–fibula and skull. It was also shown that the decrease of lead accumulation with age is made by three plateaus of accumulation,

Guimarães, D., M. L. Carvalho, V. Geraldes, I. Rocha, and J. P. Santos. "Study of lead accumulation in bones of Wistar rats by X-ray fluorescence analysis: aging effect." Metallomics 4 (2012): 66. AbstractWebsite

The accumulation of lead in several bones of Wistar rats with time was determined and compared Q3 for the different types of bones. Two groups were studied: a control group (n = 20), not exposed to lead and a contaminated group (n = 30), exposed to lead from birth, first indirectly throughmother’s milk, and then directly through a diet containing lead acetate in drinking water (0.2%). Rats age ranged from 1 to 11 months, with approximately 1 month intervals and each of the collections had 3 contaminated rats and 2 control rats. Iliac, femur, tibia–fibula and skull have been analysed by energy dispersive X-ray fluorescence technique (EDXRF). Samples of formaldehyde used to preserve the bone tissues were also analysed by Electrothermal Atomic Absorption (ETAAS), showing that there was no significant loss of lead from the tissue to the preservative. The bones mean lead concentration of exposed rats range from 100 to 300 mg g 1 while control rats never exceeded 10 mg g 1. Mean bone lead concentrations were compared andthe concentrations were higher in iliac, femur and tibia–fibula and after that skull. However, of all the concentrations in the different collections, only those in the skull were statistically Q4 significantly different (p o 0.05) from the other types of bones. Analysis of a radar chart also allowed us to say that these differences tend to diminish with age. The Spearman correlation test applied to mean lead concentrations showed strong and very strong positive correlations betweenall different types of bones. This test also showed that mean lead concentrations in bones are negatively correlated with the age of the animals. This correlation is strong in iliac and femur and very strong in tibia–fibula and skull. It was also shown that the decrease of lead accumulation with age is made by three plateaus of accumulation,

Pinto, R. M., R. I. Olariu, J. Lameiras, F. T. Martins, A. A. Dias, G. J. Langley, P. Rodrigues, C. D. Maycock, J. P. Santos, M. F. Duarte, M. T. Fernandez, and M. L. Costa. "Study of selected benzyl azides by UV photoelectron spectroscopy and mass spectrometry." Journal of Molecular Structure 980 (2010): 163-171. AbstractWebsite
Benzyl azide and the three methylbenzyl azides were synthesized and characterized by mass spectrometry (MS) and ultraviolet photoelectron spectroscopy (UVPES). The electron ionization fragmentation mechanisms for benzyl azide and their methyl derivatives were studied by accurate mass measurements and linked scans at constant B/E. For benzyl azide, in order to clarify the fragmentation mechanism, labelling experiments were performed. From the mass analysis of methylbenzyl azides isomers it was possible to differentiate the isomers ortho, meta and para. The abundance and nature of the ions resulting from the molecular ion fragmentation, for the three distinct isomers of substituted benzyl azides, were rationalized in terms of the electronic properties of the substituent. Concerning the para-isomer, IRC calculations were performed at UHF/6-31G(d) level. The photoionization study of benzyl azide, with He(I) radiation, revealed five bands in the 8-21 eV ionization energies region. From every photoelectron spectrum of methylbenzyl azides isomers it has been identified seven bands, on the same range as the benzyl azide. Interpretation of the photoelectron spectra was accomplished applying Koopmans' theorem to the SCF orbital energies obtained at HF/6-311++G(d, p) level.
Pinto, R. M., R. I. Olariu, J. Lameiras, F. T. Martins, A. A. Dias, G. J. Langley, P. Rodrigues, C. D. Maycock, J. P. Santos, M. F. Duarte, M. T. Fernandez, and M. L. Costa. "Study of selected benzyl azides by UV photoelectron spectroscopy and mass spectrometry." Journal of Molecular Structure 980 (2010): 163-171. AbstractWebsite

Benzyl azide and the three methylbenzyl azides were synthesized and characterized by mass spectrometry (MS) and ultraviolet photoelectron spectroscopy (UVPES). The electron ionization fragmentation mechanisms for benzyl azide and their methyl derivatives were studied by accurate mass measurements and linked scans at constant B/E. For benzyl azide, in order to clarify the fragmentation mechanism, labelling experiments were performed. From the mass analysis of methylbenzyl azides isomers it was possible to differentiate the isomers ortho, meta and para. The abundance and nature of the ions resulting from the molecular ion fragmentation, for the three distinct isomers of substituted benzyl azides, were rationalized in terms of the electronic properties of the substituent. Concerning the para-isomer, IRC calculations were performed at UHF/6-31G(d) level. The photoionization study of benzyl azide, with He(I) radiation, revealed five bands in the 8-21 eV ionization energies region. From every photoelectron spectrum of methylbenzyl azides isomers it has been identified seven bands, on the same range as the benzyl azide. Interpretation of the photoelectron spectra was accomplished applying Koopmans' theorem to the SCF orbital energies obtained at HF/6-311++G(d, p) level.

Dyke, J. M., G. Levita, A. Morris, J. S. Ogden, A. A. Dias, M. Algarra, J. P. Santos, M. L. Costa, P. Rodrigues, and M. T. Barros. "A Study of the Thermal Decomposition of 2-Azidoacetamide by Ultraviolet Photoelectron Spectroscopy and Matrix-Isolation Infrared Spectroscopy:  Identification of the Imine Intermediate H2NCOCHNH." The Journal of Physical Chemistry A 108 (2004): 5299-5307. AbstractWebsite

The thermal decomposition of 2-azidoacetamide (N3CH2CONH2) has been studied by matrix-isolation infrared spectroscopy and real-time ultraviolet photoelectron spectroscopy. N2, CH2NH, HNCO, CO, NH3, and HCN are observed as high-temperature decomposition products, while at lower temperatures, the novel imine intermediate H2NCOCHNH is observed in the matrix-isolation IR experiments. The identity of this intermediate is confirmed both by ab initio molecular orbital calculations of its IR spectrum and by the temperature dependence and distribution of products in the photoelectron spectroscopy (PES) and IR studies. Mechanisms are proposed for the formation and decomposition of the intermediate consistent both with the observed results and with estimated activation energies based on pathway calculations.

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Pinto, R. M., A. A. Dias, M. Coreano, M. de Simone, B. M. Giuliano, J. P. Santos, and M. L. Costa. "Tautomerism in 5-aminotetrazole investigated by core-level photoelectron spectroscopy and ΔSCF calculations." J. Electron. Spectrosc. Related Phenomena 185 (2012): 13-17. AbstractWebsite

The C 1s and N 1s photoelectron spectra of gas-phase 5-aminotetrazole (5ATZ) were recorded using synchrotron radiation, with the aim of evaluating 1H/2H tautomer population ratios. The core-electron binding energies (CEBEs) were estimated from computational results, using the delta self-consistent-field (ΔSCF) approach. Simulated spectra were generated using these CEBEs and the results from Gaussian-n (Gn, n=1, 2 and 3) and Complete Basis Set (CBS-4M and CBS-Q) methods. Results reveal the almost exclusive predominance of the 2H-tautomer, with a 1H/2H ratio of ca. 0.12/0.88, taken from a gross analysis of the XPS C 1s spectrum, recorded at 365 K.

Pinto, R. M., A. A. Dias, M. Coreno, M. de Simone, B. M. Giuliano, J. P. Santos, and M. L. Costa. "Tautomerism in 5-aminotetrazole investigated by core-level photoelectron spectroscopy and ΔSCF calculations." Journal of Electron Spectroscopy and Related Phenomena 185 (2012): 13-17. AbstractWebsite

The C 1s and N 1s photoelectron spectra of gas-phase 5-aminotetrazole (5ATZ) were recorded using synchrotron radiation, with the aim of evaluating 1H/2H tautomer population ratios. The core-electron binding energies (CEBEs) were estimated from computational results, using the delta self-consistent-field (ΔSCF) approach. Simulated spectra were generated using these CEBEs and the results from Gaussian-n (Gn, n=1, 2 and 3) and Complete Basis Set (CBS-4M and CBS-Q) methods. Results reveal the almost exclusive predominance of the 2H-tautomer, with a 1H/2H ratio of ca. 0.12/0.88, taken from a gross analysis of the XPS C 1s spectrum, recorded at 365 K.