Publications

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2015
Rationalizing the role of the anion in CO2 capture and conversion using imidazolium-based ionic liquid modified mesoporous sílica, Aquino, Aline S., Bernard FL, Borges JV, Mafra Luis, Dalla Vecchia Felipe, Vieira MO, Ligabue R., Chaban VV, Cabrita E. J., and Einloft S. , RSC Advances, Volume 5, p.64220-64227, (2015)
2014
Assessing diffusion in enzyme loaded sol–gel matrices, Barreira, Gustavo, Ferreira Ana S. D., Vidinha Pedro, Cabral Joaquim M. S., Martinho José M. G., Lima João Carlos, Cabrita Eurico J., and Barreiros Susana , RSC Advances, Volume 4, p.25099-25105, (2014) AbstractWebsite

Pulsed field gradient spin echo high resolution magic angle spinning nuclear magnetic resonance spectroscopy is a powerful technique to characterize confined biosystems. We used this approach to assess the diffusion of solvent and reaction species within sol–gel matrices differing in enzyme loading.

Ion Jelly Conductive Properties Using Dicyanamide-Based Ionic Liquids, Carvalho, T., Augusto V., Rocha A., Lourenco N. M. T., Correia N. T., Barreiros S., Vidinha P., Cabrita E. J., and Dionisio M. , Journal of Physical Chemistry B, Volume 118, Issue 31, p.9445-59, (2014) AbstractWebsite

The thermal behavior and transport properties of several ion jellys (IJs), a composite that results from the combination of gelatin with an ionic liquid (IL), were investigated by dielectric relaxation spectroscopy (DRS), differential scanning calorimetry (DSC), and pulsed field gradient nuclear magnetic resonance spectroscopy (PFG NMR). Four different ILs containing the dicyanamide anion were used: 1-butyl-3-methylimidazolium dicyanamide (BMIMDCA), 1-ethyl-3-methylimidazolium dicyanamide (EMIMDCA), 1-butyl-1-methylpyrrolidinium dicyanamide (BMPyrDCA), and 1-butylpyridinium dicyanamide (BPyDCA); the bulk ILs were also investigated for comparison. A glass transition was detected by DSC for all materials, ILs and IJs, allowing them to be classified as glass formers. Additionally, an increase in the glass transition temperature upon dehydration was observed with a greater extent for IJs, attributed to a greater hindrance imposed by the gelatin matrix after water removal, rendering the IL less mobile. While crystallization is observed for some ILs with negligible water content, it was never detected for any IJ upon thermal cycling, which persist always as fully amorphous materials. From DRS measurements, conductivity and diffusion coefficients for both cations (D+) and anions (D–) were extracted. D+ values obtained by DRS reveal excellent agreement with those obtained from PFG NMR direct measurements, obeying the same VFTH equation over a large temperature range (ΔT ≈ 150 K) within which D+ varies around 10 decades. At temperatures close to room temperature, the IJs exhibit D values comparable to the most hydrated (9%) ILs. The IJ derived from EMIMDCA possesses the highest conductivity and diffusion coefficient, respectively, 10–2 S·cm–1 and 10–10 m2·s–1. For BMPyrDCA the relaxational behavior was analyzed through the complex permittivity and modulus formalism allowing the assignment of the detected secondary relaxation to a Johari–Goldstein process. Besides the relevant information on the more fundamental nature providing physicochemical details on ILs behavior, new doorways are opened for practical applications by using IJ as a strategy to produce novel and stable electrolytes for different electrochemical devices.

2013
Shaping the molecular assemblies of native and alkali- modified agars in dilute and concentrated aqueous media via microwave-assisted extraction, Sousa, Ana M. M., Borges João, Silva Fernando, Ramos Ana M., Cabrita Eurico J., and Gonçalves Maria Pilar , Soft Matter, Volume 9, p.3131-3139, (2013) AbstractWebsite

The use of agar-based biomaterials for the development of emerging areas, such as tissue engineering or ‘smart materials’ production has recently gained great interest. Understanding how these gel-forming polysaccharides self-organise in aqueous media and how these associations can be tuned to meet the specific needs of each application is thus of great relevance. As an extension of previous pioneering research concerning the application of the microwave-assisted extraction (MAE) technique in the recovery of native (NA) and alkali-modified (AA) agars, this article focuses on the different molecular assemblies assumed by these novel NA and AA when using different MAE routes. The molecular architectures in dilute (5, 10, 50 and 100 mg mL1) and concentrated (1.5% (w/w)) aqueous media were imaged by AFM and cryoSEM, respectively. Relevant structural and physicochemical properties were investigated to support the microscopic data. Different extraction routes led to polysaccharides with unique properties, which in turn resulted in different molecular assemblies. Even at 5 mg mL1, AFM images included individual fibers, cyclic segments, aggregates and local networks. At higher polymer concentrations, the structures further aggregated forming multilayer polymeric networks for AA. The more compact and denser 3D networks of AA, imaged by cryoSEM, and their higher resistance to large deformations matched the 2D-shapes observed by AFM. Depending on the nature of the AA chains, homogeneous or heterogeneous growth of assemblies was seen during network formation. The obtained results support well the view of double helix formation followed by intensive double helix association proposed for agar gelation.

2012
Thymus mastichina: Chemical Constituents and their Anti-cancer Activity , Gordo, Joana, Máximo Patrícia, Cabrita Eurico, Lourenço Ana, Oliva Abel, Almeida Joana, Filipe Mariana, Cruz Pedro, Barcia Rita, Santos Miguel, and Cruz Helder , Natural Product Communications, Volume 7, Issue 11, p.1491-1494, (2012)
The Prion-like Protein Doppel Enhances Ovine Spermatozoa Fertilizing Ability, Pimenta, J., Dias FMV, Marques C. C., Baptista M. C., Vasques M. I., Horta A. E. M., Barbas J. P., Soares R., Mesquita P., Cabrita E., Fontes CMGA, Prates J. A., and Pereira R. M. , Reproduction in Domestic Animals, Volume 47, Issue 2, p.196-202, (2012) Abstract

The function of prion-like protein Doppel was suggested to be related to male fertility. In this study, the importance of ovine Doppel polypeptide on spermatozoa capacitation and fertilization was evaluated. After refolding, recombinant Doppel (rDpl) was supplemented with different concentrations (40, 80 or 190 ng/ml) to ovine spermatozoa during the capacitation process. In experiment 1, post-thawed ovine spermatozoa were incubated with different concentrations of rDpl during 1 h for swim-up, and changes in sperm motility, concentration, vigour, viability and capacitation were monitored (10 replicates). In experiment 2, the fertilization ability of post-swim-up spermatozoa incubated as above was tested through heterologous fertilization of bovine in vitro matured oocytes (n = 423, three replicates). Regardless of dosage, rDpl improved (p = 0.03) spermatozoa viability. Sperm individual motility and vigour were the highest (p = 0.04) for the group receiving 190 ng/ml rDpl. Sperm supplemented with the highest doses of rDpl achieved higher (p = 0.02) fertilization rates (56.0 +/- 3.0%) than control (39.1 +/- 2.2%) and 40 ng/ml rDpl (39.8 +/- 2.7%). Preliminary data suggest that Doppel protein may enhance in vitro spermatozoa fertilizing ability.

Understanding the Ion Jelly Conductivity Mechanism, Carvalho, T., Augusto V., Brás A. R., Lourenço N. M. T., Afonso CAM, Barreiros S., Correia N. T., Vidinha P., Cabrita E. J., Dionísio M., and Roling B. , Journal of Physical Chemistry B, Volume 116, p.2664-2676, (2012) Abstract

The properties of the light flexible device, ion jelly, which combines gelatin with an ionic liquid (IL) were recently reported being promising to develop safe and highly conductive electrolytes. This article aims for the understanding of the ion jelly conductive mechanism using dielectric relaxation spectroscopy (DRS) in the frequency range 10−1−106 Hz; the study was complemented with differential scanning calorimetry (DSC) and pulse field gradient nuclear magnetic resonance (PFG NMR) spectroscopy. The room temperature ionic liquid 1-butyl-3-methylimmidazolium dicyanamide (BMIMDCA) used as received (1.9% w/w water content) and with 6.6% (w/w) of water content and two ion jellies with two different ratios BMIMDCA/gelatin/water % (w/w), IJ1 (41.1/46.7/12.2) and IJ3 (67.8/25.6/6.6), have been characterized. A glass transition was detected by DSC for all materials allowing for classifying them as glass formers. For the ionic liquid, it was observed that the glass transition temperature decreases with the increase of water content. While in subsequent calorimetric runs crystallization was observed for BMIMDCA with negligible water content, no crystallization was detected for any of the ion jelly materials upon themal cycling. To the dielectric spectra of all tested materials, both dipolar relaxation and conductivity contribute; at the lowest frequencies, electrode and interfacial polarization highly dominate. Conductivity, which manifests much more intensity relative to dipolar reorientations, strongly evidences subdiffusive ion dynamics at high frequencies. From dielectric measures, transport properties as mobility and diffusion coefficients were extracted. Data treatment was carried out in order to deconvolute the average diffusion coefficients estimated from dielectric data in its individual contributions of cations (D+) and anions (D−). The D+ values thus obtained for IJ3, the ion jelly with the highest IL/gelatin ratio, cover a large temperature range up to room temperature and revealed excellent agreement with direct measurements from PFG NMR, obeying to the same VFT equation. For BMIMDCA6.6%water, which has the same water amount as IJ3, the diffusion coefficients were only estimated from DRS measurements over a limited temperature range; however, a single VFT equation describes both DRS and PFG NMR data. Moreover, it was found that the diffusion coefficients and mobility are similar for the ionic liquid and IJ3, which points to a role of both water and gelatin weakening the contact ion pair, facilitating the translational motion of ions and promoting its dissociation; nevertheless, it is conceivable that a critical composition of gelatin that leads to those properties. The VFT temperature dependence observed for the conductivity was found to be determined by a similar dependence of the mobility. Both conductivity and segmental motion revealed to be correlated as inferred by the relatively low values of the decoupling indexes. The obtained results show that ion jelly could be in fact a very promising material to design novel electrolytes for different electrochemical devices, having a performance close to the IL but presenting an additional stability regarding electrical measurements and resistance against crystallization relative to the bulk ionic liquid.

2011
Lewis Acid Catalyzed Reactions of Chiral Imidazolidinones and Oxazolidinones: Insights on the Role of the Catalyst, Duarte, Filipe J. S., Bakalova Snezhana M., Cabrita Eurico J., and Santos Gil A. , Journal of Organic Chemistry, Volume 76, Issue 17, p.6997-7004, (2011) Abstract

The mechanism proposed by Evans to justify the selectivity obtained in Lewis acid catalyzed Diels-Alder reactions of cyclopentadiene with acyloxazolidinones has been generalized and used in the rationalization of selectivities obtained in many other systems. However, we recently proposed an alternative mechanism, on the basis of open-chain mono- and bicomplexes, that avoids the need for chelates and explains the selectivity obtained by Evans. In this manuscript we apply our proposal to the catalyzed conjugated addition of amines to acylimidazolidinones, reported by Cardillo, and we clearly show that aluminum chelates are not involved in the reaction, as they induce no selectivity, while Cardillo observed high experimental selectivities. Our data equally show that bicomplexes with carbonyl parallel orientation, proposed by Cardillo to justify the experimental selectivity with nonchelating Lewis acids, indeed induce the opposite selectivity and have also to be dismissed. On the other hand, our mechanistic proposal allows for the full rationalization of the data obtained by Cardillo with aluminum, boron, or zinc Lewis acids and supports our previous proposal on DA cycloadditions of dienes to Evans chiral auxiliary derivatives.

2010
Quantification of organic acids in beer by nuclear magnetic resonance (NMR)-based methods, Rodrigues, J. E. A., Erny G. L., Barros A. S., Esteves V. I., Brandao T., Ferreira A. A., Cabrita E., and Gil A. M. , Analytica Chimica Acta, AUG 3 2010, Volume 674, Number 2, p.166-175, (2010) Abstract
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2009
An Alternative Mechanism for Diels-Alder Reactions of Evans Auxiliary Derivatives, Bakalova, Snezhana M., Duarte Filipe J. S., Georgieva Miglena K., Cabrita Eurico J., and Santos Gil A. , Chemistry-a European Journal, 2009, Volume 15, Number 31, p.7665-7677, (2009) Abstract
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2008
Molecular determinants of ligand specificity in family 11 carbohydrate binding modules - an NMR, X-ray crystallography and computational chemistry approach, Viegas, Aldino, Bras Natercia F., Cerqueira Nuno M. F. S. A., Fernandes Pedro Alexandrino, Prates Jose A. M., Fontes Carlos M. G. A., Bruix Marta, Romao Maria Joao, Carvalho Ana Luisa, Ramos Maria Joao, Macedo Anjos L., and Cabrita Eurico J. , Febs Journal, MAY 2008, Volume 275, Number 10, p.2524-2535, (2008) Abstract
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Application of diffusion-ordered spectroscopy for the analysis of cancer related biological samples, Ivanova, G. I., Cabrita E. J., O'Connor R., Eustace A. J., and Brougham D. F. , Bulgarian Chemical Communications, 2008, Volume 40, Number 4, p.464-468, (2008) Abstract
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2007
Residue-specific NH exchange rates studied by NMR diffusion experiments (vol 187, pg 97, 2007), Brand, Torsten, Cabrita Eurico J., Morris Gareth A., Guenther Robert, Hofmann Hans-Joerg, and Berger Stefan , Journal of Magnetic Resonance, OCT 2007, Volume 188, Number 2, p.387-387, (2007) Abstract
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Residue-specific NH exchange rates studied by NMR diffusion experiments, Brand, Torsten, Cabrita Eurico J., Morris Gareth A., Guenther Robert, Hofmann Hans-Jorg, and Berger Stefan , Journal of Magnetic Resonance, JUL 2007, Volume 187, Number 1, p.97-104, (2007) Abstract
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A new lupene triterpenetriol and anticholinesterase activity of Salvia sclareoides, Rauter, Amelia P., Branco Isabel, Lopes Rui G., Justino Jorge, Silva Filipa V. M., Noronha Joao P., Cabrita Eurico J., Brouard Ignacio, and Bermejo Jaime , Fitoterapia, DEC 2007, Volume 78, Number 7-8, p.474-481, (2007) Abstract
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2006
Theory and Application of NMR Diffusion Studies , Brand, T., Cabrita E. J., and Berger S. , Modern Magnetic Resonanc, p.131-139, (2006)
2005
Intermolecular interaction as investigated by NOE and diffusion studies, Brand, T., Cabrita E. J., and Berger S. , Progress in Nuclear Magnetic Resonance Spectroscopy, SEP 1 2005, Volume 46, Number 4, p.159-196, (2005) Abstract
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2002
High-resolution DOSY NMR with spins in different chemical surroundings: Influence of particle exchange, Cabrita, E. J., Berger S., Brauer P., and Karger J. , Journal of Magnetic Resonance, JUL 2002, Volume 157, Number 1, p.124-131, (2002) Abstract
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HR-DOSY as a new tool for the study of chemical exchange phenomena, Cabrita, E. J., and Berger S. , Magnetic Resonance in Chemistry, DEC 2002, Volume 40, p.S122-S127, (2002) Abstract
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Characterization of reactive intermediates by diffusion-ordered NMR spectroscopy: A snapshot of the reaction of (CO2)-C-13 with [Cp2Zr(Cl)H], Schlorer, NE, Cabrita E. J., and Berger S. , Angewandte Chemie-International Edition, 2002, Volume 41, Number 1, p.107-109, (2002) Abstract
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2001
DOSY studies of hydrogen bond association: tetramethylsilane as a reference compound for diffusion studies, Cabrita, E. J., and Berger S. , Magnetic Resonance in Chemistry, DEC 2001, Volume 39, p.S142-S148, (2001) Abstract
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2000
The qualitative probing of hydrogen bond strength by diffusion-ordered NMR spectroscopy, Kapur, GS, Cabrita E. J., and Berger S. , Tetrahedron Letters, SEP 9 2000, Volume 41, Number 37, p.7181-7185, (2000) Abstract
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1998
Flexible molecules with defined shape. X. Synthesis and conformational study of 1,5-diaza-cis-decalin, Santos, AGD, Klute W., Torode J., Bohm V. P. W., Cabrita E., Runsink J., and Hoffmann RW , New Journal of Chemistry, SEP 1998, Volume 22, Number 9, p.993-997, (1998) Abstract
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