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Zivy, Michel, Stefanie Wienkoop, Jenny Renaut, Carla Pinheiro, Estelle Goulas, and Sebastien Carpentier. "The quest for tolerant varieties: the importance of integrating "omics" techniques to phenotyping." Frontiers in Plant Science. 6 (2015). Abstract
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Zarrouk O., Pinheiro C., Misra Fernández Chaves C. S. V. M. "Fleshy fruit epidermis is a protective barrier under water stress." Water Scarcity and Sustainable Agriculture in Semiarid Environment: Tools, Strategies, and Challenges for Woody Crops. Ed. García-Tejero Durán I. & V. Zuazo. 2018. 507-533.
Zarrouk, Olfa, Cecilia Brunetti, Ricardo Egipto, Carla Pinheiro, Tania Genebra, Antonella Gori, Carlos M. Lopes, Massimiliano Tattini, and M. Manuela Chaves. "Grape Ripening Is Regulated by Deficit Irrigation/Elevated Temperatures According to Cluster Position in the Canopy." Frontiers in Plant Science. 7 (2016). AbstractWebsite
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Zarrouk, Olfa, Rita Francisco, Marta Pinto-Marijuan, Ricard Brossa, Raquen Raissa Santos, Carla Pinheiro, Joaquim Miguel Costa, Carlos Lopes, and Maria Manuela Chaves. "Impact of irrigation regime on berry development and flavonoids composition in Aragonez (Syn. Tempranillo) grapevine." Agricultural Water Management. 114 (2012). AbstractWebsite
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Zarrouk, Olfa, Rita Francisco, Marta Pinto-Marijuan, Ricard Brossa, Raquen Raissa Santos, Carla Pinheiro, Joaquim Miguel Costa, Carlos Lopes, and Maria Manuela Chaves. "Impact of irrigation regime on berry development and flavonoids composition in Aragonez (Syn. Tempranillo) grapevine." Agricultural Water Management. 114 (2012). AbstractWebsite
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Teixeira, RT, AM Fortes, H. Bai, C. Pinheiro, and H. Pereira. "Transcriptional profiling of cork oak phellogenic cells isolated by laser microdissection." Planta. 247 (2018): 317-338. AbstractWebsite
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Teixeira, RT, AM Fortes, C. Pinheiro, and H. Pereira. "Comparison of good- and bad-quality cork: application of high-throughput sequencing of phellogenic tissue." Journal of Experimental Botany (2014). Abstract
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Teixeira, RT, AM Fortes, C. Pinheiro, and H. Pereira. "Comparison of good- and bad-quality cork: application of high-throughput sequencing of phellogenic tissue." Journal of Experimental Botany (2014). Abstract
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Sergeant, K., C. Pinheiro, JF Hausman, and al.et. "Taking Advantage of Nonspecific Trypsin Cleavages for the Identification of Seed Storage Proteins in Cereals." JOURNAL OF PROTEOME RESEARCH. 8 (2009): 3182-3190. Abstract
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Sergeant, K., C. Pinheiro, JF Hausman, and al.et. "Taking Advantage of Nonspecific Trypsin Cleavages for the Identification of Seed Storage Proteins in Cereals." JOURNAL OF PROTEOME RESEARCH. 8 (2009): 3182-3190. Abstract
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Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Ricardo, Candido P. P., Isabel Martins, Rita Francisco, Kjell Sergeant, Carla Pinheiro, Alexandre Campos, Jenny Renaut, and Pedro Fevereiro. "Proteins associated with cork formation in Quercus suber L. stem tissues." Journal of Proteomics. 74 (2011): 1266-1278. AbstractWebsite
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Ribeiro, IC, C. Pinheiro, C. M. Ribeiro, M. M. Veloso, M. C. Simoes-Costa, I. Evaristo, O. S. Paulo, and C. P. Ricardo. "Genetic Diversity and Physiological Performance of Portuguese Wild Beet (Beta vulgaris spp. maritima) from Three Contrasting Habitats." Frontiers in Plant Science. 7 (2016). AbstractWebsite
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Ribeiro, IC, C. C. Leclercq, N. Simoes, A. Toureiro, I. Duarte, J. B. Freire, M. M. Chaves, J. Renaut, and C. Pinheiro. "Identification of chickpea seed proteins resistant to simulated in vitro human digestion." Journal of Proteomics. 169 (2017): 143-152. AbstractWebsite
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Regalado, AP, C. Pinheiro, S. Vidal, I. Chaves, CPP Ricardo, and C. Rodrigues-Pousada. "The Lupinus albus class-III chitinase gene, IF3, is constitutively expressed in vegetative organs and developing seeds." Planta. 210 (2000): 543-550. Abstract
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Regalado, AP, C. Pinheiro, S. Vidal, I. Chaves, CPP Ricardo, and C. Rodrigues-Pousada. "The Lupinus albus class-III chitinase gene, IF3, is constitutively expressed in vegetative organs and developing seeds." Planta. 210 (2000): 543-550. Abstract
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Price, NJ, C. Pinheiro, C. M. Soares, DA Ashford, C. P. Ricardo, and PA Jackson. "A biochemical and molecular characterization of LEP1, an extensin peroxidase from lupin." Journal of Biological Chemistry. 278 (2003): 41389-41399. Abstract
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Price, NJ, C. Pinheiro, C. M. Soares, DA Ashford, C. P. Ricardo, and PA Jackson. "A biochemical and molecular characterization of LEP1, an extensin peroxidase from lupin." Journal of Biological Chemistry. 278 (2003): 41389-41399. Abstract
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Pinheiro, Carla, Leonor Guerra-Guimaraes, Teresa S. David, and Ana Vieira. "Proteomics: State of the art to study Mediterranean woody species under stress." Environmental and Experimental Botany. 103 (2014): 117-127. AbstractWebsite
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Pinheiro, Carla, Leonor Guerra-Guimaraes, Teresa S. David, and Ana Vieira. "Proteomics: State of the art to study Mediterranean woody species under stress." Environmental and Experimental Botany. 103 (2014): 117-127. AbstractWebsite
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Pinheiro, C., J. A. Passarinho, and C. P. Ricardo. "Effect of drought and rewatering on the metabolism of Lupinus albus organs." Journal of Plant Physiology. 161 (2004): 1203-1210. AbstractWebsite
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Pinheiro, C., IC Ribeiro, V. Reisinger, S. Planchon, M. M. Veloso, J. Renaut, L. Eichacker, and C. P. Ricardo. "Salinity effect on germination, seedling growth and cotyledon membrane complexes of a Portuguese salt marsh wild beet ecotype." Theoretical and Experimental Plant Physiology. 30 (2018): 113-127. AbstractWebsite
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Pinheiro, C., and M. M. Chaves. "Photosynthesis and drought: can we make metabolic connections from available data?" Journal of Experimental Botany. 62 (2011): 869-882. AbstractWebsite

Photosynthesis is one of the key processes to be affected by water deficits, via decreased CO2 diffusion to the chloroplast and metabolic constraints. The relative impact of those limitations varies with the intensity of the stress, the occurrence (or not) of superimposed stresses, and the species we are dealing with. Total plant carbon uptake is further reduced due to the concomitant or even earlier inhibition of growth. Leaf carbohydrate status, altered directly by water deficits or indirectly (via decreased growth), acts as a metabolic signal although its role is not totally clear. Other relevant signals acting under water deficits comprise: abscisic acid (ABA), with an impact on stomatal aperture and the regulation at the transcription level of a large number of genes related to plant stress response; other hormones that act either concurrently (brassinosteroids, jasmonates, and salycilic acid) or antagonistically (auxin, cytokinin, or ethylene) with ABA; and redox control of the energy balance of photosynthetic cells deprived of CO2 by stomatal closure. In an attempt to systematize current knowledge on the complex network of interactions and regulation of photosynthesis in plants subjected to water deficits, a meta-analysis has been performed covering > 450 papers published in the last 15 years. This analysis shows the interplay of sugars, reactive oxygen species (ROS), and hormones with photosynthetic responses to drought, involving many metabolic events. However, more significantly it highlights (i) how fragmented and often non-comparable the results are and (ii) how hard it is to relate molecular events to plant physiological status, namely photosynthetic activity, and to stress intensity. Indeed, the same data set usually does not integrate these different levels of analysis. Considering these limitations, it was hard to find a general trend, particularly concerning molecular responses to drought, with the exception of the genes ABI1 and ABI3. These genes, irrespective of the stress type (acute versus chronic) and intensity, show a similar response to water shortage in the two plant systems analysed (Arabidopsis and barley). Both are associated with ABA-mediated metabolic responses to stress and the regulation of stomatal aperture. Under drought, ABI1 transcription is up-regulated while ABI3 is usually down-regulated. Recently ABI3 has been hypothesized to be essential for successful drought recovery.